>Y1141_HAEDU (Q7VM59) UPF0209 protein HD_1141|
          Length = 667

 Score = 34.3 bits (77), Expect = 0.24
 Identities = 19/76 (25%), Positives = 35/76 (46%)
 Frame = -3

Query: 521 SESGYKGRAMASGAVRPKLAYIVCYVKDVPKSVAFYADAFGYNVRRVDDSQKWAELDTGS 342
           S+   K    A GA+ P+L+       D P++V FY   F Y ++R+   +K    +   
Sbjct: 295 SQVAQKASGNAQGAIYPQLS------DDDPRNVRFYVHCFDYALQRLKQFEKLVPFEHAL 348

Query: 341 TTIAFTALHQRETDAL 294
           T +  +A +++    L
Sbjct: 349 TGVVLSAYNEKTAQKL 364

>Y911_MYCBO (P64742) Hypothetical protein Mb0911c|
          Length = 170

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 32/124 (25%), Positives = 46/124 (37%), Gaps = 2/124 (1%)
 Frame = -3

Query: 446 VKDVPKSVAFYADAF-GYNVRRVDDSQKWAELDTGSTTI-AFTALHQRETDALTGEVQLP 273
           V D   ++ FY  AF    + RV       +L   +  I  FT +   +   + G   + 
Sbjct: 33  VDDAASAIDFYVKAFDAVELGRVPGPD--GKLIHAALRINGFTVMLNDDVPQMCGGKSMT 90

Query: 272 KSPRERGPVEICFXXXXXXXXXXXXVEKGAVPVSAPEQKNWGQKVGYVRDVDGITVRLGS 93
            +     PV I              +  GA  V+A E + WG + G V D  G    LG 
Sbjct: 91  PTSLGGTPVTIHLTVTDVDAKFQRALNAGATVVTALEDQLWGDRYGVVADPFGHHWSLGQ 150

Query: 92  HVRE 81
            VRE
Sbjct: 151 PVRE 154

>Y887_MYCTU (P64741) Hypothetical protein Rv0887c/MT0910|
          Length = 170

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 32/124 (25%), Positives = 46/124 (37%), Gaps = 2/124 (1%)
 Frame = -3

Query: 446 VKDVPKSVAFYADAF-GYNVRRVDDSQKWAELDTGSTTI-AFTALHQRETDALTGEVQLP 273
           V D   ++ FY  AF    + RV       +L   +  I  FT +   +   + G   + 
Sbjct: 33  VDDAASAIDFYVKAFDAVELGRVPGPD--GKLIHAALRINGFTVMLNDDVPQMCGGKSMT 90

Query: 272 KSPRERGPVEICFXXXXXXXXXXXXVEKGAVPVSAPEQKNWGQKVGYVRDVDGITVRLGS 93
            +     PV I              +  GA  V+A E + WG + G V D  G    LG 
Sbjct: 91  PTSLGGTPVTIHLTVTDVDAKFQRALNAGATVVTALEDQLWGDRYGVVADPFGHHWSLGQ 150

Query: 92  HVRE 81
            VRE
Sbjct: 151 PVRE 154

>GCSH_AERPE (Q9YDG2) Probable glycine cleavage system H protein|
          Length = 147

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -3

Query: 386 RVDDSQKWAELDTGSTTIAFTALHQRETDALTGEVQLPKSPRE 258
           R  +S +WA L+ G  T+  T   Q+E   + G V+LP+  R+
Sbjct: 26  RYTESDEWARLEDGVATVGITDFAQKELKDIVG-VELPEKGRK 67

>UXUA_CLOAB (Q97JF4) Mannonate dehydratase (EC 4.2.1.8) (D-mannonate hydrolase)|
          Length = 351

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 356 LDTGSTTIAFTALHQRETDALTGEVQLP 273
           LD GSTT+ +     ++ D LTGE+ LP
Sbjct: 120 LDDGSTTLVYYKNQLKKMDPLTGELSLP 147

>EX7L_XANAC (Q8PJW7) Probable exodeoxyribonuclease VII large subunit (EC|
           3.1.11.6) (Exonuclease VII large subunit)
          Length = 445

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
 Frame = +3

Query: 276 QLHLASERVRLPLVQRRERDGRRAGVQLRPLLRXXXXXXXXXXXXXXXXXRLGHVLD--- 446
           +L   S + RL L+ RR+ D   AG QLR                     R+ HVL+   
Sbjct: 301 RLRAQSPQARLQLLHRRQED---AGRQLR--------------------ARMMHVLERLQ 337

Query: 447 --VTHDVRELRSHRPRRHCSSLVTTFR 521
             V     +L+SH P+RH + L    R
Sbjct: 338 ARVQRGQAQLQSHNPQRHLAGLQQRLR 364


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,546,591
Number of Sequences: 219361
Number of extensions: 852277
Number of successful extensions: 2662
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2662
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4488201198
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)