>gb|DQ088379.1| Homo sapiens synuclein, alpha (non A4 component of amyloid precursor)
             (SNCA) gene, complete cds
          Length = 113681

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 508   atgaacttctcaaggtgccat 528
             |||||||||||||||||||||
Sbjct: 75020 atgaacttctcaaggtgccat 75000

>gb|AC144536.4| Homo sapiens 3 BAC RP11-213K17 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 152224

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 146   caaaagttcaaatgctgcaac 166
             |||||||||||||||||||||
Sbjct: 78821 caaaagttcaaatgctgcaac 78841

>gb|AC105752.2| Homo sapiens chromosome 3 clone RP11-45K8, complete sequence
          Length = 142525

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 146    caaaagttcaaatgctgcaac 166
              |||||||||||||||||||||
Sbjct: 119484 caaaagttcaaatgctgcaac 119464

>gb|AC097478.2| Homo sapiens BAC clone RP11-115D19 from 4, complete sequence
          Length = 169484

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 508    atgaacttctcaaggtgccat 528
              |||||||||||||||||||||
Sbjct: 147291 atgaacttctcaaggtgccat 147311

>gb|AF163864.1|AF163864 Homo sapiens SNCA isoform (SNCA) gene, complete cds, alternatively
              spliced
          Length = 145606

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 508    atgaacttctcaaggtgccat 528
              |||||||||||||||||||||
Sbjct: 103276 atgaacttctcaaggtgccat 103256

>ref|NM_001008392.1| Homo sapiens CTD (carboxy-terminal domain, RNA polymerase II,
            polypeptide A) small phosphatase-like (CTDSPL),
            transcript variant 1, mRNA
          Length = 4455

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 146  caaaagttcaaatgctgcaac 166
            |||||||||||||||||||||
Sbjct: 3943 caaaagttcaaatgctgcaac 3923

>ref|NM_005808.2| Homo sapiens CTD (carboxy-terminal domain, RNA polymerase II,
            polypeptide A) small phosphatase-like (CTDSPL),
            transcript variant 2, mRNA
          Length = 4422

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 146  caaaagttcaaatgctgcaac 166
            |||||||||||||||||||||
Sbjct: 3910 caaaagttcaaatgctgcaac 3890

>dbj|AP006242.1| Homo sapiens genomic DNA, chromosome 3, clone:RP11-713K14, complete
              sequence
          Length = 167380

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 146    caaaagttcaaatgctgcaac 166
              |||||||||||||||||||||
Sbjct: 131806 caaaagttcaaatgctgcaac 131786

>dbj|AP000497.1| Homo sapiens genomic DNA, chromosome 3p21.3, clone:301 to 308,
             anti-oncogene region, section 5/5
          Length = 146596

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 146   caaaagttcaaatgctgcaac 166
             |||||||||||||||||||||
Sbjct: 58891 caaaagttcaaatgctgcaac 58871

>dbj|D88153.1| Homo sapiens mRNA for HYA22, complete cds
          Length = 4763

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 146  caaaagttcaaatgctgcaac 166
            |||||||||||||||||||||
Sbjct: 4253 caaaagttcaaatgctgcaac 4233

>gb|AC120535.5| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0092N01,
              complete sequence
          Length = 161741

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 140    gcacttcaaaagttcaaatg 159
              ||||||||||||||||||||
Sbjct: 122552 gcacttcaaaagttcaaatg 122571

>gb|AC138004.3| Oryza sativa chromosome 3 BAC OSJNBb0023J24 genomic sequence, complete
             sequence
          Length = 130193

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 140   gcacttcaaaagttcaaatg 159
             ||||||||||||||||||||
Sbjct: 76195 gcacttcaaaagttcaaatg 76176

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 140      gcacttcaaaagttcaaatg 159
                ||||||||||||||||||||
Sbjct: 25226513 gcacttcaaaagttcaaatg 25226532

>gb|AC147051.2| Mus musculus BAC clone RP23-90H22 from chromosome 8, complete
            sequence
          Length = 224213

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 526  cattggttatttctcggaat 545
            ||||||||||||||||||||
Sbjct: 1270 cattggttatttctcggaat 1289

>emb|CT010434.8| Mouse DNA sequence from clone RP23-225H9 on chromosome 17, complete
              sequence
          Length = 218000

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 516    ctcaaggtgccattggttat 535
              ||||||||||||||||||||
Sbjct: 115324 ctcaaggtgccattggttat 115305

>gb|AC129310.6| Mus musculus BAC clone RP24-348D18 from chromosome 8, complete sequence
          Length = 130946

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 526   cattggttatttctcggaat 545
             ||||||||||||||||||||
Sbjct: 66383 cattggttatttctcggaat 66402

>gb|AC111012.3| Mus musculus BAC clone RP24-146N3 from 8, complete sequence
          Length = 155637

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 526   cattggttatttctcggaat 545
             ||||||||||||||||||||
Sbjct: 22300 cattggttatttctcggaat 22319

>emb|AL645792.7| Zebrafish DNA sequence from clone RP71-1D10 in linkage group 14 Contains
              two novel genes similar to MATR3 (matrin 3), a novel gene
              similar to PDE6A (cGMP-specific phosphodiesterase 6A alpha
              (rod)), a novel gene similar to PERC (PGC-1-related
              estrogen receptor alpha coactivator) and two CpG islands,
              complete sequence
          Length = 170221

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 475    ccaagcatatacatatgctc 494
              ||||||||||||||||||||
Sbjct: 118204 ccaagcatatacatatgctc 118185

>gb|AC096541.2| Homo sapiens chromosome 1 clone RP11-330M19, complete sequence
          Length = 200368

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 21     tgccttgcaggagctcagtc 40
              ||||||||||||||||||||
Sbjct: 150909 tgccttgcaggagctcagtc 150928

>gb|AC067807.10| Homo sapiens chromosome 11, clone RP11-738J16, complete sequence
          Length = 166312

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 88     agacattaagattgcagtaa 107
              ||||||||||||||||||||
Sbjct: 106943 agacattaagattgcagtaa 106962

>gb|AC008860.7| Homo sapiens chromosome 5 clone CTD-2185A1, complete sequence
          Length = 105885

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 545   tggagtacttaagcaatgct 564
             ||||||||||||||||||||
Sbjct: 40694 tggagtacttaagcaatgct 40675

>gb|AC016612.6| Homo sapiens chromosome 5 clone CTD-2197M16, complete sequence
          Length = 179513

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 545    tggagtacttaagcaatgct 564
              ||||||||||||||||||||
Sbjct: 144073 tggagtacttaagcaatgct 144054

>gb|AC157652.3| Mus musculus BAC clone RP24-324J2 from chromosome 10, complete sequence
          Length = 191096

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 127   cagagattggcatgcacttc 146
             ||||||||||||||||||||
Sbjct: 83035 cagagattggcatgcacttc 83016

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 140      gcacttcaaaagttcaaatg 159
                ||||||||||||||||||||
Sbjct: 25317885 gcacttcaaaagttcaaatg 25317904

>gb|AC131943.1| Homo sapiens BAC clone CTD-2242C10 from 4, complete sequence
          Length = 135585

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 95     aagattgcagtaacaagaac 114
              ||||||||||||||||||||
Sbjct: 123084 aagattgcagtaacaagaac 123065

>gb|AC112204.2| Homo sapiens chromosome 5 clone RP11-79C6, complete sequence
          Length = 165304

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 545    tggagtacttaagcaatgct 564
              ||||||||||||||||||||
Sbjct: 149938 tggagtacttaagcaatgct 149957

>dbj|AP001980.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-264L21, complete
             sequence
          Length = 151939

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 149   aagttcaaatgctgcaactt 168
             ||||||||||||||||||||
Sbjct: 93137 aagttcaaatgctgcaactt 93156

>dbj|AP003460.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-285P16, complete
             sequence
          Length = 171738

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 149   aagttcaaatgctgcaactt 168
             ||||||||||||||||||||
Sbjct: 15811 aagttcaaatgctgcaactt 15830

>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 362     cttcgccgaacaactcgacc 381
               ||||||||||||||||||||
Sbjct: 4360228 cttcgccgaacaactcgacc 4360247

>gb|AC131680.4| Mus musculus BAC clone RP23-346F8 from 8, complete sequence
          Length = 198162

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 526   cattggttatttctcggaat 545
             ||||||||||||||||||||
Sbjct: 17941 cattggttatttctcggaat 17922

>dbj|AP003718.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-203F8, complete
            sequence
          Length = 85000

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 88   agacattaagattgcagtaa 107
            ||||||||||||||||||||
Sbjct: 9945 agacattaagattgcagtaa 9926


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,356,066
Number of Sequences: 3902068
Number of extensions: 4356066
Number of successful extensions: 68134
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68020
Number of HSP's gapped (non-prelim): 114
length of query: 626
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 603
effective length of database: 17,143,297,704
effective search space: 10337408515512
effective search space used: 10337408515512
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)