ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags23k14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VILI3_ARATH (O81645) Villin-3 86 1e-16
2VILI2_ARATH (O81644) Villin-2 85 2e-16
3VILI4_ARATH (O65570) Villin-4 67 7e-11
4VILI1_ARATH (O81643) Villin-1 57 7e-08
5VILI_CHICK (P02640) Villin-1 50 5e-06
6VILL_MOUSE (Q91YD6) Villin-like protein (EF-6) 50 7e-06
7VILL_HUMAN (O15195) Villin-like protein 49 2e-05
8VILI_MOUSE (Q62468) Villin-1 45 2e-04
9AVIL_MOUSE (O88398) Advillin (p92) (Actin-binding protein DOC6) 45 2e-04
10AVIL_HUMAN (O75366) Advillin (p92) 44 4e-04
11VILI_HUMAN (P09327) Villin-1 44 6e-04
12VILD_DICDI (Q8WQ85) Villidin 39 0.015
13ABLM2_HUMAN (Q6H8Q1) Actin-binding LIM protein 2 (Actin-binding ... 37 0.074
14ABLM2_RAT (Q6KC51) Actin-binding LIM protein 2 (Actin-binding LI... 37 0.074
15ABLM2_MOUSE (Q8BL65) Actin-binding LIM protein 2 (Actin-binding ... 37 0.074
16SVIL_HUMAN (O95425) Supervillin (Archvillin) (p205/p250) 35 0.17
17VILI_DICDI (P36418) Protovillin (100 kDa actin-binding protein) 35 0.22
18ABLM3_MOUSE (Q69ZX8) Actin-binding LIM protein 3 (Actin-binding ... 35 0.22
19SVIL_MOUSE (Q8K4L3) Supervillin (Archvillin) (p205/p250) 35 0.28
20DEMA_PONPY (Q5R4B6) Dematin (Erythrocyte membrane protein band 4.9) 35 0.28
21DEMA_MOUSE (Q9WV69) Dematin (Erythrocyte membrane protein band 4.9) 35 0.28
22DEMA_HUMAN (Q08495) Dematin (Erythrocyte membrane protein band 4.9) 35 0.28
23ABLM3_HUMAN (O94929) Actin-binding LIM protein 3 (Actin-binding ... 35 0.28
24ABLM1_HUMAN (O14639) Actin-binding LIM protein 1 (Actin-binding ... 34 0.37
25ABLM1_MOUSE (Q8K4G5) Actin-binding LIM protein 1 (Actin-binding ... 33 0.63
26YCF2_ANTFO (Q859W7) Protein ycf2 31 4.1
27CYB_PLAFA (Q02768) Cytochrome b 30 5.3
28IF2_PSYAR (Q4FVL5) Translation initiation factor IF-2 30 7.0
29ADRB1_MELGA (P07700) Beta-1 adrenergic receptor (Beta-1 adrenoce... 30 7.0
30OR22C_DROME (P81911) Putative odorant receptor 22c 30 7.0
31ADRB1_PIG (Q28998) Beta-1 adrenergic receptor (Beta-1 adrenocept... 30 7.0
32UBE3C_MOUSE (Q80U95) Ubiquitin-protein ligase E3C (EC 6.3.2.-) 30 9.1

>VILI3_ARATH (O81645) Villin-3|
          Length = 966

 Score = 85.9 bits (211), Expect = 1e-16
 Identities = 39/61 (63%), Positives = 50/61 (81%)
 Frame = -2

Query: 603  TFSYDRLISKSTDPIRGIDYKRREAYLSESEFQTVFGVTKDVFYLQPGWKQELQKRKADL 424
            TF+Y+RL +KS  P+ GID+KRREAYLSE EF+TVFG+ K+ FY  PGWKQ+L K+K +L
Sbjct: 906  TFTYERLQAKSEKPVTGIDFKRREAYLSEVEFKTVFGMEKESFYKLPGWKQDLLKKKFNL 965

Query: 423  F 421
            F
Sbjct: 966  F 966



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>VILI2_ARATH (O81644) Villin-2|
          Length = 976

 Score = 84.7 bits (208), Expect = 2e-16
 Identities = 42/77 (54%), Positives = 55/77 (71%), Gaps = 7/77 (9%)
 Frame = -2

Query: 630  QTTEHVGE-------ATFSYDRLISKSTDPIRGIDYKRREAYLSESEFQTVFGVTKDVFY 472
            Q TE  G+       ATF+Y++L +KS +P+ GID+KRREAYLSE EFQ+VFG+ K+ F 
Sbjct: 900  QETEEQGDSEIQPSGATFTYEQLRAKSENPVTGIDFKRREAYLSEEEFQSVFGIEKEAFN 959

Query: 471  LQPGWKQELQKRKADLF 421
              P WKQ+L K+K DLF
Sbjct: 960  NLPRWKQDLLKKKFDLF 976



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>VILI4_ARATH (O65570) Villin-4|
          Length = 974

 Score = 66.6 bits (161), Expect = 7e-11
 Identities = 32/58 (55%), Positives = 37/58 (63%)
 Frame = -2

Query: 594  YDRLISKSTDPIRGIDYKRREAYLSESEFQTVFGVTKDVFYLQPGWKQELQKRKADLF 421
            YDRL + STDP+  ID  RREAYLS  EF+  FG+TK+ FY  P WKQ   K    LF
Sbjct: 917  YDRLKTTSTDPVSDIDVTRREAYLSSEEFKEKFGMTKEAFYKLPKWKQNKFKMAVQLF 974



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>VILI1_ARATH (O81643) Villin-1|
          Length = 910

 Score = 56.6 bits (135), Expect = 7e-08
 Identities = 28/60 (46%), Positives = 35/60 (58%)
 Frame = -2

Query: 600  FSYDRLISKSTDPIRGIDYKRREAYLSESEFQTVFGVTKDVFYLQPGWKQELQKRKADLF 421
            +SY++L   S  P+  ID  RREAYL+E EF+  FG+ K  FY  P WKQ   K    LF
Sbjct: 851  YSYEQLRVDSQKPVTDIDATRREAYLTEKEFEERFGMAKSEFYALPKWKQNKLKISLHLF 910



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>VILI_CHICK (P02640) Villin-1|
          Length = 826

 Score = 50.4 bits (119), Expect = 5e-06
 Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
 Frame = -2

Query: 603 TFSYDRLISKSTDPI-RGIDYKRREAYLSESEFQTVFGVTKDVFYLQPGWKQELQKRKAD 427
           TF  D L++ + + + RG+D  R+E +LS+ +F+ VFG+T+  F   P WKQ+  K++  
Sbjct: 765 TFPLDVLVNTAAEDLPRGVDPSRKENHLSDEDFKAVFGMTRSAFANLPLWKQQNLKKEKG 824

Query: 426 LF 421
           LF
Sbjct: 825 LF 826



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>VILL_MOUSE (Q91YD6) Villin-like protein (EF-6)|
          Length = 859

 Score = 50.1 bits (118), Expect = 7e-06
 Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
 Frame = -2

Query: 591 DRLISKSTDPIR-GIDYKRREAYLSESEFQTVFGVTKDVFYLQPGWKQELQKRKADLF 421
           +RL+ ++ + +  G+D  R+E YLS+S+FQ +FG +K+ FY    WKQ+  K+K   F
Sbjct: 802 ERLMHQALEDLPPGVDPARKEFYLSDSDFQDIFGKSKEEFYSMAKWKQQQAKKKLGFF 859



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>VILL_HUMAN (O15195) Villin-like protein|
          Length = 856

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 20/45 (44%), Positives = 30/45 (66%)
 Frame = -2

Query: 555 GIDYKRREAYLSESEFQTVFGVTKDVFYLQPGWKQELQKRKADLF 421
           G+D  RRE YLS+S+FQ +FG +K+ FY    W+Q  +K++   F
Sbjct: 812 GVDPARREFYLSDSDFQDIFGKSKEEFYSMATWRQRQEKKQLGFF 856



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>VILI_MOUSE (Q62468) Villin-1|
          Length = 826

 Score = 45.4 bits (106), Expect = 2e-04
 Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
 Frame = -2

Query: 603 TFSYDRLISKSTDPI-RGIDYKRREAYLSESEFQTVFGVTKDVFYLQPGWKQELQKRKAD 427
           TF  ++L++KS + +  G+D  R+E +LS  +F    G+T   F   P WKQ+  K++  
Sbjct: 765 TFPLEQLVNKSVEDLPEGVDPSRKEEHLSTEDFTRALGMTPAAFSALPRWKQQNIKKEKG 824

Query: 426 LF 421
           LF
Sbjct: 825 LF 826



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>AVIL_MOUSE (O88398) Advillin (p92) (Actin-binding protein DOC6)|
          Length = 819

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 20/44 (45%), Positives = 29/44 (65%)
 Frame = -2

Query: 552 IDYKRREAYLSESEFQTVFGVTKDVFYLQPGWKQELQKRKADLF 421
           +D  ++E YLSE +F +VFG+T+  F   PGWK+   KR+  LF
Sbjct: 776 VDPAKKENYLSEQDFVSVFGITRGQFTALPGWKRLQLKRERGLF 819



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>AVIL_HUMAN (O75366) Advillin (p92)|
          Length = 819

 Score = 44.3 bits (103), Expect = 4e-04
 Identities = 19/40 (47%), Positives = 27/40 (67%)
 Frame = -2

Query: 540 RREAYLSESEFQTVFGVTKDVFYLQPGWKQELQKRKADLF 421
           ++E YLSE +F +VFG+T+  F   PGWKQ   K++  LF
Sbjct: 780 KKENYLSEQDFVSVFGITRGQFAALPGWKQLQMKKEKGLF 819



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>VILI_HUMAN (P09327) Villin-1|
          Length = 826

 Score = 43.5 bits (101), Expect = 6e-04
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
 Frame = -2

Query: 600 FSYDRLISKSTDPI-RGIDYKRREAYLSESEFQTVFGVTKDVFYLQPGWKQELQKRKADL 424
           F  ++L++K  + +  G+D  R+E +LS  +F   FG+T   F   P WKQ+  K++  L
Sbjct: 766 FPLEQLVNKPVEELPEGVDPSRKEEHLSIEDFTQAFGMTPAAFSALPRWKQQNLKKEKGL 825

Query: 423 F 421
           F
Sbjct: 826 F 826



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>VILD_DICDI (Q8WQ85) Villidin|
          Length = 1704

 Score = 38.9 bits (89), Expect = 0.015
 Identities = 19/61 (31%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
 Frame = -2

Query: 600  FSYDRLISKSTDPI-RGIDYKRREAYLSESEFQTVFGVTKDVFYLQPGWKQELQKRKADL 424
            ++Y+ L++   DP+  G+D  + + YL++ +F+ VF +T+  +   P WK+E  K++  L
Sbjct: 1647 YTYEELLA---DPLPAGVDSTKLDTYLNDEDFEKVFKMTRTEWLKIPAWKREGIKKELFL 1703

Query: 423  F 421
            F
Sbjct: 1704 F 1704



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>ABLM2_HUMAN (Q6H8Q1) Actin-binding LIM protein 2 (Actin-binding LIM protein|
           family member 2) (abLIM2)
          Length = 611

 Score = 36.6 bits (83), Expect = 0.074
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
 Frame = -2

Query: 600 FSYDRLISKSTDPIR---GIDYKRREAYLSESEFQTVFGVTKDVFYLQPGWKQELQKRKA 430
           + YD LI  +   ++    +D  R E +LS  EFQ VFG++ + F     WK+   K+KA
Sbjct: 549 YPYDSLIVTNRIRVKLPKDVDRTRLERHLSPEEFQEVFGMSIEEFDRLALWKRNDLKKKA 608

Query: 429 DLF 421
            LF
Sbjct: 609 LLF 611



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>ABLM2_RAT (Q6KC51) Actin-binding LIM protein 2 (Actin-binding LIM protein|
           family member 2) (abLIM2)
          Length = 612

 Score = 36.6 bits (83), Expect = 0.074
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
 Frame = -2

Query: 600 FSYDRLISKSTDPIR---GIDYKRREAYLSESEFQTVFGVTKDVFYLQPGWKQELQKRKA 430
           + YD LI  +   ++    +D  R E +LS  EFQ VFG++ + F     WK+   K+KA
Sbjct: 550 YPYDSLIVTNRIRVKLPKDVDRTRLERHLSPEEFQEVFGMSIEEFDRLALWKRNDLKKKA 609

Query: 429 DLF 421
            LF
Sbjct: 610 LLF 612



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>ABLM2_MOUSE (Q8BL65) Actin-binding LIM protein 2 (Actin-binding LIM protein|
           family member 2) (abLIM2)
          Length = 612

 Score = 36.6 bits (83), Expect = 0.074
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
 Frame = -2

Query: 600 FSYDRLISKSTDPIR---GIDYKRREAYLSESEFQTVFGVTKDVFYLQPGWKQELQKRKA 430
           + YD LI  +   ++    +D  R E +LS  EFQ VFG++ + F     WK+   K+KA
Sbjct: 550 YPYDSLIVTNRIRVKLPKDVDRTRLERHLSPEEFQEVFGMSIEEFDRLALWKRNDLKKKA 609

Query: 429 DLF 421
            LF
Sbjct: 610 LLF 612



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>SVIL_HUMAN (O95425) Supervillin (Archvillin) (p205/p250)|
          Length = 2214

 Score = 35.4 bits (80), Expect = 0.17
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -2

Query: 555  GIDYKRREAYLSESEFQTVFGVTKDVFYLQPGWKQELQKRKADLF 421
            G+D  + E YL++ +F+    +T+D +   P WKQ   K+   LF
Sbjct: 2170 GVDPLKLEIYLTDEDFEFALDMTRDEYNALPAWKQVNLKKAKGLF 2214



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>VILI_DICDI (P36418) Protovillin (100 kDa actin-binding protein)|
          Length = 959

 Score = 35.0 bits (79), Expect = 0.22
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = -2

Query: 603  TFSYDRLISKSTDPIRGIDYKRREAYLSESEFQTVFGVTKDVFYLQPGWKQELQKRKADL 424
            TF    ++ + T+    ID      YLS+ EF + F +TK++F   P WK +  +    L
Sbjct: 899  TFYPLSVLKQKTNLPNDIDKSCLHLYLSDEEFLSTFKMTKEIFQKTPAWKTKQLRVDNGL 958

Query: 423  F 421
            F
Sbjct: 959  F 959



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>ABLM3_MOUSE (Q69ZX8) Actin-binding LIM protein 3 (Actin-binding LIM protein|
           family member 3) (abLIM3)
          Length = 682

 Score = 35.0 bits (79), Expect = 0.22
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = -2

Query: 558 RGIDYKRREAYLSESEFQTVFGVTKDVFYLQPGWKQELQKRKADLF 421
           + +D  R E +LS+ EF  VFG+T   F     WK+   K++A LF
Sbjct: 637 KDVDRTRLERHLSQEEFYQVFGMTISEFERLALWKRNELKKQARLF 682



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>SVIL_MOUSE (Q8K4L3) Supervillin (Archvillin) (p205/p250)|
          Length = 2170

 Score = 34.7 bits (78), Expect = 0.28
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -2

Query: 555  GIDYKRREAYLSESEFQTVFGVTKDVFYLQPGWKQELQKRKADLF 421
            G+D  + E YL++ +F+    +++D F   P WKQ   K+   LF
Sbjct: 2126 GVDPLKLEIYLTDEDFEFALDMSRDEFNALPTWKQVNLKKSKGLF 2170



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>DEMA_PONPY (Q5R4B6) Dematin (Erythrocyte membrane protein band 4.9)|
          Length = 405

 Score = 34.7 bits (78), Expect = 0.28
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -2

Query: 555 GIDYKRREAYLSESEFQTVFGVTKDVFYLQPGWKQELQKRKADLF 421
           G+D  R E +LS  +F  VF ++ + F     WK+   K+KA LF
Sbjct: 361 GVDRMRLERHLSAEDFSRVFAMSPEEFGKLALWKRNELKKKASLF 405



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>DEMA_MOUSE (Q9WV69) Dematin (Erythrocyte membrane protein band 4.9)|
          Length = 405

 Score = 34.7 bits (78), Expect = 0.28
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -2

Query: 555 GIDYKRREAYLSESEFQTVFGVTKDVFYLQPGWKQELQKRKADLF 421
           G+D  R E +LS  +F  VF ++ + F     WK+   K+KA LF
Sbjct: 361 GVDRMRLERHLSAEDFSRVFAMSPEEFGKLALWKRNELKKKASLF 405



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>DEMA_HUMAN (Q08495) Dematin (Erythrocyte membrane protein band 4.9)|
          Length = 405

 Score = 34.7 bits (78), Expect = 0.28
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -2

Query: 555 GIDYKRREAYLSESEFQTVFGVTKDVFYLQPGWKQELQKRKADLF 421
           G+D  R E +LS  +F  VF ++ + F     WK+   K+KA LF
Sbjct: 361 GVDRMRLERHLSAEDFSRVFAMSPEEFGKLALWKRNELKKKASLF 405



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>ABLM3_HUMAN (O94929) Actin-binding LIM protein 3 (Actin-binding LIM protein|
           family member 3) (abLIM3)
          Length = 683

 Score = 34.7 bits (78), Expect = 0.28
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = -2

Query: 558 RGIDYKRREAYLSESEFQTVFGVTKDVFYLQPGWKQELQKRKADLF 421
           + +D  R E +LS+ EF  VFG+T   F     WK+   K++A LF
Sbjct: 638 KDVDRTRLERHLSQEEFYQVFGMTISEFDRLALWKRNELKKQARLF 683



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>ABLM1_HUMAN (O14639) Actin-binding LIM protein 1 (Actin-binding LIM protein|
           family member 1) (abLIM-1) (Actin-binding
           double-zinc-finger protein) (LIMAB1) (Limatin)
          Length = 778

 Score = 34.3 bits (77), Expect = 0.37
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = -2

Query: 561 IRGIDYKRREAYLSESEFQTVFGVTKDVFYLQPGWKQELQKRKADLF 421
           +R +D  R E +L+   F+ +FG++   F   P W++   K+KA LF
Sbjct: 732 LREVDRTRLERHLAPEVFREIFGMSIQEFDRLPLWRRNDMKKKAKLF 778



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>ABLM1_MOUSE (Q8K4G5) Actin-binding LIM protein 1 (Actin-binding LIM protein|
           family member 1) (abLIM-1)
          Length = 861

 Score = 33.5 bits (75), Expect = 0.63
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = -2

Query: 561 IRGIDYKRREAYLSESEFQTVFGVTKDVFYLQPGWKQELQKRKADLF 421
           +R +D  R E +L+   F  +FG++   F   P W++   K+KA LF
Sbjct: 815 LRDVDRTRLERHLAPEVFWEIFGMSIQEFDKLPLWRRNDMKKKAKLF 861



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>YCF2_ANTFO (Q859W7) Protein ycf2|
          Length = 2392

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +3

Query: 150  REKPYTYGQSQNKLEHTRTLQAAQHSTLSPCTNERMTYKIRKTN 281
            REK  T+  S+N  E   + Q AQ+ T      ER+  +IR+ N
Sbjct: 2108 REKEQTFSVSENSREIFHSSQVAQYKTKEELPYERILSRIRRRN 2151



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>CYB_PLAFA (Q02768) Cytochrome b|
          Length = 376

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 31/121 (25%)
 Frame = -2

Query: 387 MRSINHMCLFLPLS-------------S*LVGTIHCWSSLCEW-----------LPVAFG 280
           +R +N+  ++LPLS             +  VG +  W  +  W           +PVA  
Sbjct: 94  LRGLNYSYMYLPLSWISGLILFMIFIVTAFVGYVLPWGQMSYWGATVITNLLSSIPVAVI 153

Query: 279 WFCEFY-------RSFFRLYMD*VCCAVLLARS*YALACFVIVHMCMVFLGLFYVHAYGQ 121
           W C  Y       + FF L+                      + +C+VF+ +F++H +G 
Sbjct: 154 WICGGYTVSDPTIKRFFVLHF-----------------ILPFIGLCIVFIHIFFLHLHGS 196

Query: 120 S 118
           +
Sbjct: 197 T 197



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>IF2_PSYAR (Q4FVL5) Translation initiation factor IF-2|
          Length = 908

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +3

Query: 102 QNIPRGTAHTHVRKTNREKPYTYGQSQNKLEHTRTLQAAQHSTLSPCTNERMTYKIRKTN 281
           + I RGT+ T  R   R K     + +N+    R+ Q+AQH    P   E++ Y +  + 
Sbjct: 276 REIKRGTSSTTARGRGRRKNQDEREIKNRKNGLRSSQSAQHKFEKPV--EKIVYDVEISE 333

Query: 282 Q 284
           Q
Sbjct: 334 Q 334



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>ADRB1_MELGA (P07700) Beta-1 adrenergic receptor (Beta-1 adrenoceptor) (Beta-1|
           adrenoreceptor) (Beta-T)
          Length = 483

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = -2

Query: 339 LVGTIHCWSSLCEWLPVAFGWFCEFYRSFFRLYMD*VCCAVLLARS*YALACFVIVHMCM 160
           ++ T+   S+L  +LP+   W+ +      + Y D  CC  +  R+ YA+A  +I     
Sbjct: 161 IICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRA-YAIASSIISFYIP 219

Query: 159 VFLGLF-YVHAYGQS 118
           + + +F Y+  Y ++
Sbjct: 220 LLIMIFVYLRVYREA 234



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>OR22C_DROME (P81911) Putative odorant receptor 22c|
          Length = 402

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 19/37 (51%), Positives = 23/37 (62%)
 Frame = -3

Query: 647 WRCQRNKQLNMLVKQHLATTA*YLNLLILSVG*TTNA 537
           W  +R +   MLV   LATTA  L+LL+LS G  TNA
Sbjct: 112 WESRRQEAQRMLVG--LATTANRLSLLLLSSGTATNA 146



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>ADRB1_PIG (Q28998) Beta-1 adrenergic receptor (Beta-1 adrenoceptor) (Beta-1|
           adrenoreceptor)
          Length = 468

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
 Frame = -2

Query: 339 LVGTIHCWSSLCEWLPVAFGWFCEFYRSFFRLYMD*VCCAVLLARS*YALACFVI---VH 169
           LV T+   S+L  +LP+   W+ +      R Y D  CC  +  R+ YA+A  V+   V 
Sbjct: 177 LVCTVWAISALVSFLPILMHWWRDKGAEARRCYNDPKCCDFVTNRA-YAIASSVVSFYVP 235

Query: 168 MCM---VFLGLF 142
           +C+   V+L +F
Sbjct: 236 LCIMAFVYLRVF 247



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>UBE3C_MOUSE (Q80U95) Ubiquitin-protein ligase E3C (EC 6.3.2.-)|
          Length = 1083

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = +2

Query: 269 SQNQPKATGSHSHKDDQQWIVPTNHDERGKNKHI*LIDLILR--EDRKQPLIQKRSAFRF 442
           S+ + KA+  H  +++++       +ER + K+  +I   +R   DRKQ    +RSAF  
Sbjct: 20  SRKEEKASLLHRTQEERR----KREEERRRLKNAVIIQSFIRGYRDRKQQYFIQRSAFDQ 75

Query: 443 CSSCFHPG 466
           C+    PG
Sbjct: 76  CTDSAQPG 83


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,739,249
Number of Sequences: 219361
Number of extensions: 1903750
Number of successful extensions: 4589
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 4446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4588
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6882837918
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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