ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags23k14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY106157.1| Zea mays PCO066687 mRNA sequence 137 5e-29
2dbj|AK121389.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 1e-14
3dbj|AK103910.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 1e-14
4gb|AY104332.1| Zea mays PCO109929 mRNA sequence 88 5e-14
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 54 6e-04
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 54 6e-04
7gb|AC137076.1| Genomic sequence for Oryza sativa, Nipponbare str... 54 6e-04
8gb|AY109043.1| Zea mays PCO147658 mRNA sequence 52 0.002
9gb|AC126783.33| Medicago truncatula clone mth2-15k17, complete s... 44 0.61
10gb|AC162523.9| Mus musculus chromosome 8, clone RP23-370L21, com... 42 2.4
11gb|AC167707.2| Reniera sp. JGI-2005 clone JGIBAYC-9L12, complete... 42 2.4
12gb|AC123616.11| Mus musculus chromosome 8, clone RP23-4F1, compl... 42 2.4
13gb|AC127551.7| Mus musculus BAC clone RP24-547H23 from chromosom... 42 2.4
14emb|AL390760.25| Human DNA sequence from clone RP11-370F5 on chr... 42 2.4
15emb|AL157882.5| Human DNA sequence from clone RP11-202I11 on chr... 42 2.4
16gb|AC007782.20| Homo sapiens 12 BAC RP11-515B12 (Roswell Park Ca... 42 2.4
17dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
18dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
19dbj|AP005395.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
20dbj|AP004463.2| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
21gb|AC166746.7| Mus musculus chromosome 19, clone RP24-248H10, co... 40 9.5
22gb|AC131743.3| Mus musculus BAC clone RP23-68K21 from chromosome... 40 9.5
23gb|AC144768.2| Mus musculus BAC clone RP23-24K24 from chromosome... 40 9.5
24gb|AC107663.10| Mus musculus chromosome 13, clone RP23-99G9, com... 40 9.5
25gb|AC087801.69| Mus musculus strain C57BL/6J clone rp23-396i23 m... 40 9.5
26gb|AC125484.4| Mus musculus BAC clone RP23-127L14 from chromosom... 40 9.5
27gb|AC104100.6| Mus musculus BAC clone RP24-374D12 from chromosom... 40 9.5
28gb|AC100154.9| Mus musculus chromosome 7, clone RP23-43N5, compl... 40 9.5
29gb|AC162878.2| Mus musculus chromosome 7, clone RP24-316O13, com... 40 9.5
30gb|AC091708.2| Gallus gallus clone XXbac-68C5, complete sequence 40 9.5
31emb|BX511254.6| Zebrafish DNA sequence from clone DKEYP-90G2 in ... 40 9.5
32gb|AC163701.4| Gallus gallus BAC clone CH261-117C7 from chromoso... 40 9.5
33dbj|AK030732.1| Mus musculus 8 days embryo whole body cDNA, RIKE... 40 9.5
34dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.5
35dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.5
36dbj|AP005785.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.5
37dbj|AP005199.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.5
38dbj|AP004665.4| Oryza sativa (japonica cultivar-group) genomic D... 40 9.5
39dbj|AP004558.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.5
40gb|AC110576.12| Mus musculus chromosome 8, clone RP23-329K17, co... 40 9.5
41emb|CR974440.6| Zebrafish DNA sequence from clone CH73-78M16 in ... 40 9.5
42gb|AC102572.17| Mus musculus chromosome 18, clone RP23-234A9, co... 40 9.5
43gb|AC151001.2| Mus musculus BAC clone RP23-45M16 from 7, complet... 40 9.5
44dbj|AB066524.1| Macaca fascicularis brain cDNA clone:QmoA-11085,... 40 9.5 
>gb|AY106157.1| Zea mays PCO066687 mRNA sequence
          Length = 989

 Score =  137 bits (69), Expect = 5e-29
 Identities = 162/193 (83%)
 Strand = Plus / Minus

                                                                       
Query: 425 agatcggctttccgcttctgcagctcttgcttccaccctggctgcaggtagaacacgtcc 484
           ||||| ||||| |||||||| || |||||||||||   ||||||  |||||||  | |||
Sbjct: 582 agatctgcttttcgcttctgtagttcttgcttccaatttggctgtcggtagaatgcatcc 523

                                                                       
Query: 485 ttggtgacgccgaagacagtctggaactcgctctccgataagtacgcctctctgcgtttg 544
           ||||| | ||| || ||||| ||||| || || || |||||||| |||||||||||||||
Sbjct: 522 ttggtcatgccaaaaacagtttggaattcactatctgataagtatgcctctctgcgtttg 463

                                                                       
Query: 545 tagtctatcccacggataggatcagtagatttagatatcaagcggtcgtagctaaatgtt 604
           || ||||||||||| |  ||||| || ||||| |||||||||||||| ||||||||||| 
Sbjct: 462 taatctatcccacgaactggatcggtggatttggatatcaagcggtcatagctaaatgtc 403

                        
Query: 605 gcttcaccaacat 617
           |||||||||||||
Sbjct: 402 gcttcaccaacat 390
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>dbj|AK121389.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023128M19, full
            insert sequence
          Length = 3343

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 120/145 (82%)
 Strand = Plus / Minus

                                                                        
Query: 440  ttctgcagctcttgcttccaccctggctgcaggtagaacacgtccttggtgacgccgaag 499
            ||||| || ||||| ||||||||||||||| |||||||| | ||||| || |  || || 
Sbjct: 3053 ttctgtagttcttgtttccaccctggctgctggtagaactcttccttcgttataccaaat 2994

                                                                        
Query: 500  acagtctggaactcgctctccgataagtacgcctctctgcgtttgtagtctatcccacgg 559
            ||||||||||| ||||| ||||| || || | ||||||||||||||| ||||||||||| 
Sbjct: 2993 acagtctggaattcgctgtccgacaaatatgtctctctgcgtttgtaatctatcccacga 2934

                                     
Query: 560  ataggatcagtagatttagatatca 584
            | ||| |  |||||||| |||||||
Sbjct: 2933 acagggttggtagattttgatatca 2909
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>dbj|AK103910.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033150O18, full
            insert sequence
          Length = 1711

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 120/145 (82%)
 Strand = Plus / Minus

                                                                        
Query: 440  ttctgcagctcttgcttccaccctggctgcaggtagaacacgtccttggtgacgccgaag 499
            ||||| || ||||| ||||||||||||||| |||||||| | ||||| || |  || || 
Sbjct: 1253 ttctgtagttcttgtttccaccctggctgctggtagaactcttccttcgttataccaaat 1194

                                                                        
Query: 500  acagtctggaactcgctctccgataagtacgcctctctgcgtttgtagtctatcccacgg 559
            ||||||||||| ||||| ||||| || || | ||||||||||||||| ||||||||||| 
Sbjct: 1193 acagtctggaattcgctgtccgacaaatatgtctctctgcgtttgtaatctatcccacga 1134

                                     
Query: 560  ataggatcagtagatttagatatca 584
            | ||| |  |||||||| |||||||
Sbjct: 1133 acagggttggtagattttgatatca 1109
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>gb|AY104332.1| Zea mays PCO109929 mRNA sequence
          Length = 989

 Score = 87.7 bits (44), Expect = 5e-14
 Identities = 143/176 (81%)
 Strand = Plus / Minus

                                                                       
Query: 425 agatcggctttccgcttctgcagctcttgcttccaccctggctgcaggtagaacacgtcc 484
           ||||| ||||||  |||||||| |||||||||||||| |||||||  ||||||| | || 
Sbjct: 813 agatcagctttcttcttctgcaactcttgcttccaccttggctgctcgtagaactcctct 754

                                                                       
Query: 485 ttggtgacgccgaagacagtctggaactcgctctccgataagtacgcctctctgcgtttg 544
           ||||| | ||| || || |||| ||||||  | |||   || || | ||||||||| |||
Sbjct: 753 ttggtcatgccaaacacggtctcgaactcattgtccaccaaatatgtctctctgcgcttg 694

                                                                   
Query: 545 tagtctatcccacggataggatcagtagatttagatatcaagcggtcgtagctaaa 600
           | ||||||||||| || ||| |||||||| || |||| ||||||||||||||||||
Sbjct: 693 tggtctatcccactgacagggtcagtagactttgataccaagcggtcgtagctaaa 638
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 69/83 (83%)
 Strand = Plus / Minus

                                                                            
Query: 440      ttctgcagctcttgcttccaccctggctgcaggtagaacacgtccttggtgacgccgaag 499
                ||||| || ||||| ||||||||||||||| |||||||| | ||||| || |  || || 
Sbjct: 13626441 ttctgtagttcttgtttccaccctggctgctggtagaactcttccttcgttataccaaat 13626382

                                       
Query: 500      acagtctggaactcgctctccga 522
                ||||||||||| ||||| |||||
Sbjct: 13626381 acagtctggaattcgctgtccga 13626359



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                      
Query: 531      cctctctgcgtttgtagtctatcccacggataggatcagtagatttagatatca 584
                |||||||||||||||| ||||||||||| | ||| |  |||||||| |||||||
Sbjct: 13625506 cctctctgcgtttgtaatctatcccacgaacagggttggtagattttgatatca 13625453
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 69/83 (83%)
 Strand = Plus / Minus

                                                                            
Query: 440      ttctgcagctcttgcttccaccctggctgcaggtagaacacgtccttggtgacgccgaag 499
                ||||| || ||||| ||||||||||||||| |||||||| | ||||| || |  || || 
Sbjct: 13621416 ttctgtagttcttgtttccaccctggctgctggtagaactcttccttcgttataccaaat 13621357

                                       
Query: 500      acagtctggaactcgctctccga 522
                ||||||||||| ||||| |||||
Sbjct: 13621356 acagtctggaattcgctgtccga 13621334



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                      
Query: 531      cctctctgcgtttgtagtctatcccacggataggatcagtagatttagatatca 584
                |||||||||||||||| ||||||||||| | ||| |  |||||||| |||||||
Sbjct: 13620481 cctctctgcgtttgtaatctatcccacgaacagggttggtagattttgatatca 13620428
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>gb|AC137076.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0033D20, from chromosome 3, complete sequence
          Length = 128707

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 69/83 (83%)
 Strand = Plus / Minus

                                                                         
Query: 440   ttctgcagctcttgcttccaccctggctgcaggtagaacacgtccttggtgacgccgaag 499
             ||||| || ||||| ||||||||||||||| |||||||| | ||||| || |  || || 
Sbjct: 17113 ttctgtagttcttgtttccaccctggctgctggtagaactcttccttcgttataccaaat 17054

                                    
Query: 500   acagtctggaactcgctctccga 522
             ||||||||||| ||||| |||||
Sbjct: 17053 acagtctggaattcgctgtccga 17031



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                   
Query: 531   cctctctgcgtttgtagtctatcccacggataggatcagtagatttagatatca 584
             |||||||||||||||| ||||||||||| | ||| |  |||||||| |||||||
Sbjct: 16178 cctctctgcgtttgtaatctatcccacgaacagggttggtagattttgatatca 16125
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>gb|AY109043.1| Zea mays PCO147658 mRNA sequence
          Length = 822

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                 
Query: 425 agatcggctttccgcttctgcagctcttgcttccaccctggctgcaggtagaac 478
           ||||||||||||   ||||||| |||||||||||||| |||||||  |||||||
Sbjct: 362 agatcggctttctttttctgcaactcttgcttccaccttggctgctcgtagaac 309
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>gb|AC126783.33| Medicago truncatula clone mth2-15k17, complete sequence
          Length = 117437

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 209   gcaagcagcacagcacagcaca 230
             ||||||||||||||||||||||
Sbjct: 27034 gcaagcagcacagcacagcaca 27055
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>gb|AC162523.9| Mus musculus chromosome 8, clone RP23-370L21, complete sequence
          Length = 193777

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 201    aggaccttgcaagcagcacag 221
              |||||||||||||||||||||
Sbjct: 184822 aggaccttgcaagcagcacag 184802
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>gb|AC167707.2| Reniera sp. JGI-2005 clone JGIBAYC-9L12, complete sequence
          Length = 40570

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 272   caaaaccaaccaaaagccaca 292
             |||||||||||||||||||||
Sbjct: 12679 caaaaccaaccaaaagccaca 12659
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>gb|AC123616.11| Mus musculus chromosome 8, clone RP23-4F1, complete sequence
          Length = 228851

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 201    aggaccttgcaagcagcacag 221
              |||||||||||||||||||||
Sbjct: 108739 aggaccttgcaagcagcacag 108759
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>gb|AC127551.7| Mus musculus BAC clone RP24-547H23 from chromosome 8, complete sequence
          Length = 204342

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 201    aggaccttgcaagcagcacag 221
              |||||||||||||||||||||
Sbjct: 202779 aggaccttgcaagcagcacag 202799
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>emb|AL390760.25| Human DNA sequence from clone RP11-370F5 on chromosome 9 Contains the
             3' emd of novel gene (MGC11115), the NINJ1 gene for
             ninjurin 1, a novel gene, the 5' end of the PRKWNK2 gene
             for protein kinase, lysine deficient 2 (WNK2, NY-CO-43,
             SDCCAG43, P/OKcl.13) and two CpG islands, complete
             sequence
          Length = 175797

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 640   cacctccagcgcctcaggctctgct 664
             ||||||||||| |||||||||||||
Sbjct: 64410 cacctccagcggctcaggctctgct 64434
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>emb|AL157882.5| Human DNA sequence from clone RP11-202I11 on chromosome 9q21.32-22.2
             Contains the 5' end of the AGTPBP1 gene for  ATP/GTP
             binding protein 1 (NNA1, KIAA1035), a novel gene, the 5'
             end of a pseudogene similar to part of a novel protein
             (DKFZp434D0917) and a CpG island, complete sequence
          Length = 172903

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 354   gtaaaaacaagcacatatgattgat 378
             ||||||||||| |||||||||||||
Sbjct: 63249 gtaaaaacaagtacatatgattgat 63273
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>gb|AC007782.20| Homo sapiens 12 BAC RP11-515B12 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 166083

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 358    aaacaagcacatatgattgat 378
              |||||||||||||||||||||
Sbjct: 146682 aaacaagcacatatgattgat 146662
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 211      aagcagcacagcacagcacac 231
                |||||||||||||||||||||
Sbjct: 20452453 aagcagcacagcacagcacac 20452473



 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 211      aagcagcacagcacagcaca 230
                ||||||||||||||||||||
Sbjct: 21854019 aagcagcacagcacagcaca 21854038
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 368      atatgattgattgatctcattctgc 392
                ||||||||||||||||| |||||||
Sbjct: 28255741 atatgattgattgatctgattctgc 28255717
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>dbj|AP005395.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0623A10
          Length = 156517

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 368   atatgattgattgatctcattctgc 392
             ||||||||||||||||| |||||||
Sbjct: 53770 atatgattgattgatctgattctgc 53746
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>dbj|AP004463.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0456B03
          Length = 152973

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 211   aagcagcacagcacagcacac 231
             |||||||||||||||||||||
Sbjct: 83083 aagcagcacagcacagcacac 83103
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>gb|AC166746.7| Mus musculus chromosome 19, clone RP24-248H10, complete sequence
          Length = 156084

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 212   agcagcacagcacagcacac 231
             ||||||||||||||||||||
Sbjct: 32602 agcagcacagcacagcacac 32583
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>gb|AC131743.3| Mus musculus BAC clone RP23-68K21 from chromosome 13, complete sequence
          Length = 235930

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 454    cttccaccctggctgcaggt 473
              ||||||||||||||||||||
Sbjct: 213231 cttccaccctggctgcaggt 213212
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>gb|AC144768.2| Mus musculus BAC clone RP23-24K24 from chromosome 7, complete sequence
          Length = 230675

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 211    aagcagcacagcacagcaca 230
              ||||||||||||||||||||
Sbjct: 185816 aagcagcacagcacagcaca 185835
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>gb|AC107663.10| Mus musculus chromosome 13, clone RP23-99G9, complete sequence
          Length = 213163

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 151    gagaaaaaccatacacatat 170
              ||||||||||||||||||||
Sbjct: 195026 gagaaaaaccatacacatat 195045
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>gb|AC087801.69| Mus musculus strain C57BL/6J clone rp23-396i23 map 1, complete sequence
          Length = 197679

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 97     ccttccaaaacatacccagg 116
              ||||||||||||||||||||
Sbjct: 172430 ccttccaaaacatacccagg 172411
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>gb|AC125484.4| Mus musculus BAC clone RP23-127L14 from chromosome 13, complete sequence
          Length = 207318

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 454    cttccaccctggctgcaggt 473
              ||||||||||||||||||||
Sbjct: 194517 cttccaccctggctgcaggt 194536
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>gb|AC104100.6| Mus musculus BAC clone RP24-374D12 from chromosome 7, complete sequence
          Length = 139125

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 211   aagcagcacagcacagcaca 230
             ||||||||||||||||||||
Sbjct: 91892 aagcagcacagcacagcaca 91873
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>gb|AC100154.9| Mus musculus chromosome 7, clone RP23-43N5, complete sequence
          Length = 181412

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 613  aacatgttcagttgtttgtt 632
            ||||||||||||||||||||
Sbjct: 2545 aacatgttcagttgtttgtt 2564
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>gb|AC162878.2| Mus musculus chromosome 7, clone RP24-316O13, complete sequence
          Length = 198612

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 613   aacatgttcagttgtttgtt 632
             ||||||||||||||||||||
Sbjct: 40289 aacatgttcagttgtttgtt 40308
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>gb|AC091708.2| Gallus gallus clone XXbac-68C5, complete sequence
          Length = 124309

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 39   ctagacatataggtaacatataat 62
            ||||||||||||| ||||||||||
Sbjct: 5808 ctagacatataggaaacatataat 5831
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>emb|BX511254.6| Zebrafish DNA sequence from clone DKEYP-90G2 in linkage group 17,
              complete sequence
          Length = 185139

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 343    tgatgagaggggtaaaaaca 362
              ||||||||||||||||||||
Sbjct: 117439 tgatgagaggggtaaaaaca 117420
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>gb|AC163701.4| Gallus gallus BAC clone CH261-117C7 from chromosome unknown, complete
              sequence
          Length = 239874

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 39     ctagacatataggtaacatataat 62
              ||||||||||||| ||||||||||
Sbjct: 214468 ctagacatataggaaacatataat 214445
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>dbj|AK030732.1| Mus musculus 8 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:5730424L04 product:hypothetical
           Ubiquitin carboxyl-terminal hydrolase family 2
           containing protein, full insert sequence
          Length = 2337

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 97  ccttccaaaacatacccagg 116
           ||||||||||||||||||||
Sbjct: 213 ccttccaaaacatacccagg 194
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 214      cagcacagcacagcacactc 233
                ||||||||||||||||||||
Sbjct: 29562271 cagcacagcacagcacactc 29562252
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 212     agcagcacagcacagcacac 231
               ||||||||||||||||||||
Sbjct: 5079827 agcagcacagcacagcacac 5079808
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>dbj|AP005785.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0453H10
          Length = 133464

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 212   agcagcacagcacagcacac 231
             ||||||||||||||||||||
Sbjct: 40325 agcagcacagcacagcacac 40306
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>dbj|AP005199.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0627E10
          Length = 163388

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 214   cagcacagcacagcacactc 233
             ||||||||||||||||||||
Sbjct: 88943 cagcacagcacagcacactc 88924
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>dbj|AP004665.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0429B05
          Length = 155024

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 211    aagcagcacagcacagcaca 230
              ||||||||||||||||||||
Sbjct: 133602 aagcagcacagcacagcaca 133621
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>dbj|AP004558.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0409A07
          Length = 146663

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 211   aagcagcacagcacagcaca 230
             ||||||||||||||||||||
Sbjct: 54688 aagcagcacagcacagcaca 54707
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>gb|AC110576.12| Mus musculus chromosome 8, clone RP23-329K17, complete sequence
          Length = 224141

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 243    acaaacgaaagaatgaccta 262
              ||||||||||||||||||||
Sbjct: 113991 acaaacgaaagaatgaccta 113972
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>emb|CR974440.6| Zebrafish DNA sequence from clone CH73-78M16 in linkage group 22,
             complete sequence
          Length = 123466

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 212   agcagcacagcacagcacac 231
             ||||||||||||||||||||
Sbjct: 90010 agcagcacagcacagcacac 90029
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>gb|AC102572.17| Mus musculus chromosome 18, clone RP23-234A9, complete sequence
          Length = 204140

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 438   gcttctgcagctcttgcttc 457
             ||||||||||||||||||||
Sbjct: 70846 gcttctgcagctcttgcttc 70827
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>gb|AC151001.2| Mus musculus BAC clone RP23-45M16 from 7, complete sequence
          Length = 176698

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 211   aagcagcacagcacagcaca 230
             ||||||||||||||||||||
Sbjct: 51600 aagcagcacagcacagcaca 51581
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>dbj|AB066524.1| Macaca fascicularis brain cDNA clone:QmoA-11085, full insert
           sequence
          Length = 1776

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 147 aaccgagaaaaaccatacac 166
           ||||||||||||||||||||
Sbjct: 129 aaccgagaaaaaccatacac 110


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,624,194
Number of Sequences: 3902068
Number of extensions: 5624194
Number of successful extensions: 120629
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 120292
Number of HSP's gapped (non-prelim): 337
length of query: 691
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 668
effective length of database: 17,143,297,704
effective search space: 11451722866272
effective search space used: 11451722866272
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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