ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal1b17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|BX537340.15| Zebrafish DNA sequence from clone DKEYP-93A2 in... 38 7.3
2emb|BX927397.10| Zebrafish DNA sequence from clone DKEY-87H7 in ... 38 7.3
3gb|AC023118.4|AC023118 Homo sapiens BAC clone RP11-277L22 from 1... 38 7.3
4emb|AL954309.11| Zebrafish DNA sequence from clone CH211-213D2 i... 38 7.3
5emb|BX537286.4| Zebrafish DNA sequence from clone DKEY-28J4 in l... 38 7.3
6emb|CT009755.8| Mouse DNA sequence from clone RP23-50F19 on chro... 38 7.3

>emb|BX537340.15| Zebrafish DNA sequence from clone DKEYP-93A2 in linkage group 7,
            complete sequence
          Length = 192070

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 29   agattcttcttaattaaca 47
            |||||||||||||||||||
Sbjct: 985  agattcttcttaattaaca 1003



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>emb|BX927397.10| Zebrafish DNA sequence from clone DKEY-87H7 in linkage group 7, complete
              sequence
          Length = 187890

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 29     agattcttcttaattaaca 47
              |||||||||||||||||||
Sbjct: 186875 agattcttcttaattaaca 186893



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>gb|AC023118.4|AC023118 Homo sapiens BAC clone RP11-277L22 from 11, complete sequence
          Length = 154330

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 29    agattcttcttaattaaca 47
             |||||||||||||||||||
Sbjct: 55706 agattcttcttaattaaca 55724



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>emb|AL954309.11| Zebrafish DNA sequence from clone CH211-213D2 in linkage group 8,
             complete sequence
          Length = 209195

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 29    agattcttcttaattaaca 47
             |||||||||||||||||||
Sbjct: 94095 agattcttcttaattaaca 94113



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>emb|BX537286.4| Zebrafish DNA sequence from clone DKEY-28J4 in linkage group 4,
             complete sequence
          Length = 179930

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 106   atttatacaatggtataac 124
             |||||||||||||||||||
Sbjct: 62317 atttatacaatggtataac 62299



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>emb|CT009755.8| Mouse DNA sequence from clone RP23-50F19 on chromosome 17, complete
              sequence
          Length = 215207

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 26     tgaagattcttcttaatta 44
              |||||||||||||||||||
Sbjct: 208545 tgaagattcttcttaatta 208527


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 934,939
Number of Sequences: 3902068
Number of extensions: 934939
Number of successful extensions: 71545
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71536
Number of HSP's gapped (non-prelim): 9
length of query: 151
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 130
effective length of database: 17,151,101,840
effective search space: 2229643239200
effective search space used: 2229643239200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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