ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags23j18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF384103.2| Triticum aestivum zeaxanthin epoxidase (WZE) mRNA... 745 0.0
2ref|XM_462664.1| Oryza sativa (japonica cultivar-group), predic... 170 4e-39
3gb|AY104294.1| Zea mays PCO116917 mRNA sequence 168 1e-38
4dbj|AB050884.1| Oryza sativa (japonica cultivar-group) OsABA2 mR... 165 2e-37
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 74 6e-10
6emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4,... 74 6e-10
7emb|AL139076.2|CJ11168X3 Campylobacter jejuni subsp. jejuni NCTC... 48 0.037
8gb|AY842302.1| Thellungiella halophila zeaxanthin epoxidase (ZEP... 46 0.15
9ref|NM_180954.1| Arabidopsis thaliana ABA1 (ABA DEFICIENT 1); ze... 46 0.15
10ref|NM_126103.2| Arabidopsis thaliana ABA1 (ABA DEFICIENT 1); ze... 46 0.15
11emb|CR388065.20| Zebrafish DNA sequence from clone DKEY-119P2 in... 46 0.15
12gb|AY093145.1| Arabidopsis thaliana zeaxanthin epoxidase precurs... 46 0.15
13gb|AY081304.1| Arabidopsis thaliana zeaxanthin epoxidase precurs... 46 0.15
14gb|AF281655.1|AF281655 Arabidopsis thaliana zeaxanthin epoxidase... 46 0.15
15gb|BT002560.1| Arabidopsis thaliana zeaxanthin epoxidase precurs... 46 0.15
16gb|AF134578.1|AF134578 Arabidopsis thaliana zeaxanthin epoxidase... 46 0.15
17dbj|AB030296.1| Arabidopsis thaliana AtABA1 mRNA, complete cds 46 0.15
18gb|AC154262.1| Mus musculus chromosome 14 clone RP24-304G19, com... 44 0.58
19gb|AF283761.1|AF283761 Arabidopsis thaliana zeaxanthin epoxidase... 44 0.58
20gb|AF134577.1|AF134577 Arabidopsis thaliana zeaxanthin epoxidase... 44 0.58
21dbj|AB026640.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 44 0.58
22emb|CT571274.6| Mouse DNA sequence from clone RP24-142M17 on chr... 44 0.58
23gb|AC103777.14| Homo sapiens chromosome 8, clone RP11-460G23, co... 42 2.3
24gb|AC006991.3|AC006991 Homo sapiens BAC clone RP11-270H4 from Y,... 42 2.3
25gb|AC009947.2|AC009947 Homo sapiens BAC clone RP11-39P20 from Y,... 42 2.3
26ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P... 42 2.3
27gb|AC131687.4| Mus musculus BAC clone RP23-379C1 from 14, comple... 42 2.3
28emb|AL844881.5| Mouse DNA sequence from clone RP23-244B19 on chr... 42 2.3
29gb|CP000025.1| Campylobacter jejuni RM1221, complete genome 40 9.0
30gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Ph... 40 9.0
31gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 9.0
32gb|AC130335.7| Homo sapiens chromosome 8, clone RP13-944D21, com... 40 9.0
33gb|AC146548.11| Medicago truncatula clone mth2-2p3, complete seq... 40 9.0
34gb|CP000302.1| Shewanella denitrificans OS217, complete genome 40 9.0
35emb|AL353730.13| Human DNA sequence from clone RP11-55P9 on chro... 40 9.0
36gb|AC105180.8| Homo sapiens chromosome 8, clone RP11-345J1, comp... 40 9.0
37emb|CR628336.1| Legionella pneumophila str. Paris complete genome 40 9.0
38gb|AC160145.6| Mus musculus 10 BAC RP24-160D12 (Roswell Park Can... 40 9.0
39dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
40gb|AC113191.13| Homo sapiens chromosome 8, clone RP11-598P20, co... 40 9.0
41gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic ... 40 9.0
42dbj|AP002840.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 9.0
43gb|AC133935.3| Mus musculus BAC clone RP24-387M21 from 3, comple... 40 9.0
44emb|AL671478.9| Mouse DNA sequence from clone RP23-110A15 on chr... 40 9.0 
>gb|AF384103.2| Triticum aestivum zeaxanthin epoxidase (WZE) mRNA, partial cds
          Length = 1411

 Score =  745 bits (376), Expect = 0.0
 Identities = 553/605 (91%), Gaps = 11/605 (1%)
 Strand = Plus / Minus

                                                                        
Query: 55   tattacagtggcaacagctaaaa-ttgcctacccctattgtacaccctcagttctttc-c 112
            ||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||  |
Sbjct: 1320 tattacagtggcaacagctaaaaattgcctaccc-tattgtacaccctcggttctttttc 1262

                                                                        
Query: 113  atcgaactgcgacgtagtaactctgtcagaagctattcaaaaccctgttctggcatatct 172
             | ||||||| ||||||||| |||||||||||||| |||||| |||| | ||| ||||||
Sbjct: 1261 gtagaactgcaacgtagtaattctgtcagaagctactcaaaatcctgctttgg-atatct 1203

                                                                        
Query: 173  tgatgagtacaaaaattacaattccttttcttggcggtgatgcagtgtcggctgnnnnnn 232
             ||||||| ||||| ||||||||| |||||||  |  |||||||||||||||||      
Sbjct: 1202 ggatgagtgcaaaagttacaattctttttctttcca-tgatgcagtgtcggctgttt--- 1147

                                                                        
Query: 233  nactgaagaatgct--acagtggctggtgacaaggggtggctgaagtccccactcatgct 290
             |||||||||||||  |||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 1146 -actgaagaatgctgtacagtggctggtgacaaggggtcgttgaagtccccactcatgct 1088

                                                                        
Query: 291  gcctgcagaacttctcccccgcctctcgccgagtcgtatgggagcgcgctgagcaccttc 350
            |||||||||||||||||||| |||||||| |||||||| || |||| ||| |||||||||
Sbjct: 1087 gcctgcagaacttctccccctcctctcgcggagtcgtacggaagcgtgctcagcaccttc 1028

                                                                        
Query: 351  acccggaacatggccttcttgtctgaaccaaactcgatggcatccgaagggtgaaaacga 410
            |||||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||||||
Sbjct: 1027 acccggaacatggccttcttgtctgagccaaattcgatggcatcggaagggtggaaacga 968

                                                                        
Query: 411  accgggaagtttggaggtaaccggtagcgcctaccttcgttgtcattaaaccatgtaccg 470
            || |||||||||||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct: 967  actgggaagtttggaggtaaccggtagcgtctgccttcgttgtcgttaaaccatgtaccg 908

                                                                        
Query: 471  tgctcgcttccgagatcggtcaaatagaaacccttgttcttgcatgtgatagtagcatgg 530
            ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 907  tgctcgcttcccagatcggtcaaatagaaacccttattcttgcatgtgatagtagcatgg 848

                                                                        
Query: 531  atctctgatacttgtggcaagggcaacgacaacgaagaatcagaattgctcggatctggt 590
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 847  atctctgatacttgtggcaaggggaacgacaacgaagaatcagaattgctcggatctggt 788

                                                                        
Query: 591  ttgcttccaatagagagtgtcctctgctcatccctgatcaaacgaatgggctgcaaggcg 650
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| 
Sbjct: 787  ttgcttccaatagagagtgtcctctgttcatccctgatcaaacgaatgggctgcaaggca 728

                 
Query: 651  gagtc 655
            |||||
Sbjct: 727  gagtc 723



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 32/32 (100%)
 Strand = Plus / Minus

                                            
Query: 8    tatgaacacgtgttaataggcacaacaatgta 39
            ||||||||||||||||||||||||||||||||
Sbjct: 1367 tatgaacacgtgttaataggcacaacaatgta 1336
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>ref|XM_462664.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1959

 Score =  170 bits (86), Expect = 4e-39
 Identities = 194/230 (84%)
 Strand = Plus / Minus

                                                                        
Query: 327  tatgggagcgcgctgagcaccttcacccggaacatggccttcttgtctgaaccaaactcg 386
            |||||||||| ||| ||||||||||| ||||||| |||||| || |||||||||||||| 
Sbjct: 1916 tatgggagcgtgctcagcaccttcacacggaacacggcctttttatctgaaccaaactca 1857

                                                                        
Query: 387  atggcatccgaagggtgaaaacgaaccgggaagtttggaggtaaccggtagcgcctacct 446
            ||||||||||| || || ||||| || |||||||| |||||||  || ||||| ||||||
Sbjct: 1856 atggcatccgagggatggaaacggacagggaagttcggaggtacgcgatagcgtctacct 1797

                                                                        
Query: 447  tcgttgtcattaaaccatgtaccgtgctcgcttccgagatcggtcaaatagaaacccttg 506
            ||||||||  ||| ||||||||| || || |||||   ||| |||| ||| ||  |||| 
Sbjct: 1796 tcgttgtcggtaatccatgtaccatgttcacttccattatcagtcacataaaaggcctta 1737

                                                              
Query: 507  ttcttgcatgtgatagtagcatggatctctgatacttgtggcaagggcaa 556
            |||||||||||||||||||||||| | |||||||  ||||||||||||||
Sbjct: 1736 ttcttgcatgtgatagtagcatggttttctgatatctgtggcaagggcaa 1687
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>gb|AY104294.1| Zea mays PCO116917 mRNA sequence
          Length = 1342

 Score =  168 bits (85), Expect = 1e-38
 Identities = 196/233 (84%)
 Strand = Plus / Minus

                                                                       
Query: 324 tcgtatgggagcgcgctgagcaccttcacccggaacatggccttcttgtctgaaccaaac 383
           ||||||||||||| | | |||||||||||||||||||| |||||||| || |||||||||
Sbjct: 914 tcgtatgggagcgtgttcagcaccttcacccggaacatagccttcttatcggaaccaaac 855

                                                                       
Query: 384 tcgatggcatccgaagggtgaaaacgaaccgggaagtttggaggtaaccggtagcgccta 443
           || ||| |||| ||||| || |||||||||||||||||||| || |  ||||| || |||
Sbjct: 854 tcaatgacatcggaaggatggaaacgaaccgggaagtttggtggcacgcggtaacgtcta 795

                                                                       
Query: 444 ccttcgttgtcattaaaccatgtaccgtgctcgcttccgagatcggtcaaatagaaaccc 503
           ||||| |||||  ||| ||| ||||| || || || |||||||| |||| ||||||| ||
Sbjct: 794 ccttcattgtcggtaatccaggtaccatgttcactcccgagatcagtcagatagaaagcc 735

                                                                
Query: 504 ttgttcttgcatgtgatagtagcatggatctctgatacttgtggcaagggcaa 556
           || |||||||| ||||||||||||||  | |||||||  ||||| ||||||||
Sbjct: 734 ttattcttgcacgtgatagtagcatgcctttctgatatctgtggaaagggcaa 682



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                           
Query: 597 ccaatagagagtgtcctctgctcatccctgatcaaacgaatgggctgc 644
           |||| |||||||| ||||||||||||||| || |||||||||||||||
Sbjct: 641 ccaacagagagtgacctctgctcatccctaattaaacgaatgggctgc 594
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>dbj|AB050884.1| Oryza sativa (japonica cultivar-group) OsABA2 mRNA for zeaxanthin
            epoxidase, complete cds
          Length = 2345

 Score =  165 bits (83), Expect = 2e-37
 Identities = 195/231 (84%), Gaps = 1/231 (0%)
 Strand = Plus / Minus

                                                                        
Query: 327  tatgggagcgcgctgagcaccttcacccggaacatggccttcttgtctgaaccaaactcg 386
            |||||||||| ||| ||||||||||| ||||||| |||||| || |||||||||||||| 
Sbjct: 2109 tatgggagcgtgctcagcaccttcacacggaacacggcctttttatctgaaccaaactca 2050

                                                                        
Query: 387  atggcatccgaagggtgaaaacgaaccgggaagtttggaggta-accggtagcgcctacc 445
            ||||||||||| || || ||||| || |||||||| |||||||  ||| ||||| |||||
Sbjct: 2049 atggcatccgagggatggaaacggacagggaagttcggaggtacgccgatagcgtctacc 1990

                                                                        
Query: 446  ttcgttgtcattaaaccatgtaccgtgctcgcttccgagatcggtcaaatagaaaccctt 505
            |||||||||  ||| ||||||||| || || |||||   ||| |||| ||| ||  ||||
Sbjct: 1989 ttcgttgtcggtaatccatgtaccatgttcacttccattatcagtcacataaaaggcctt 1930

                                                               
Query: 506  gttcttgcatgtgatagtagcatggatctctgatacttgtggcaagggcaa 556
             |||||||||||||||||||||||| | |||||||  ||||||||||||||
Sbjct: 1929 attcttgcatgtgatagtagcatggttttctgatatctgtggcaagggcaa 1879
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 70/81 (86%)
 Strand = Plus / Minus

                                                                            
Query: 372      tctgaaccaaactcgatggcatccgaagggtgaaaacgaaccgggaagtttggaggtaac 431
                |||||||||||||| ||||||||||| || || ||||| || |||||||| |||||||  
Sbjct: 22350882 tctgaaccaaactcaatggcatccgagggatggaaacggacagggaagttcggaggtacg 22350823

                                     
Query: 432      cggtagcgcctaccttcgttg 452
                || ||||| ||||||||||||
Sbjct: 22350822 cgatagcgtctaccttcgttg 22350802



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                       
Query: 502      ccttgttcttgcatgtgatagtagcatggatctctgata 540
                |||| |||||||||||||||||||||||| | |||||||
Sbjct: 22350662 ccttattcttgcatgtgatagtagcatggttttctgata 22350624



 Score = 48.1 bits (24), Expect = 0.037
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                        
Query: 327      tatgggagcgcgctgagcaccttcacccggaacatggcct 366
                |||||||||| ||| ||||||||||| ||||||| |||||
Sbjct: 22351048 tatgggagcgtgctcagcaccttcacacggaacacggcct 22351009



 Score = 44.1 bits (22), Expect = 0.58
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                              
Query: 64       ggcaacagctaaaattgcctacccctattg 93
                ||||||||||||||||||||  ||||||||
Sbjct: 22351331 ggcaacagctaaaattgcctgtccctattg 22351302
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>emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064H22,
              complete sequence
          Length = 147214

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 70/81 (86%)
 Strand = Plus / Minus

                                                                          
Query: 372    tctgaaccaaactcgatggcatccgaagggtgaaaacgaaccgggaagtttggaggtaac 431
              |||||||||||||| ||||||||||| || || ||||| || |||||||| |||||||  
Sbjct: 101786 tctgaaccaaactcaatggcatccgagggatggaaacggacagggaagttcggaggtacg 101727

                                   
Query: 432    cggtagcgcctaccttcgttg 452
              || ||||| ||||||||||||
Sbjct: 101726 cgatagcgtctaccttcgttg 101706



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                     
Query: 502    ccttgttcttgcatgtgatagtagcatggatctctgata 540
              |||| |||||||||||||||||||||||| | |||||||
Sbjct: 101566 ccttattcttgcatgtgatagtagcatggttttctgata 101528



 Score = 48.1 bits (24), Expect = 0.037
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                      
Query: 327    tatgggagcgcgctgagcaccttcacccggaacatggcct 366
              |||||||||| ||| ||||||||||| ||||||| |||||
Sbjct: 101952 tatgggagcgtgctcagcaccttcacacggaacacggcct 101913



 Score = 44.1 bits (22), Expect = 0.58
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 64     ggcaacagctaaaattgcctacccctattg 93
              ||||||||||||||||||||  ||||||||
Sbjct: 102235 ggcaacagctaaaattgcctgtccctattg 102206
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>emb|AL139076.2|CJ11168X3 Campylobacter jejuni subsp. jejuni NCTC 11168 complete genome; segment
              3/6
          Length = 317511

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                          
Query: 169    atcttgatgagtacaaaaattacaattc 196
              |||||||||||||||||||| |||||||
Sbjct: 283687 atcttgatgagtacaaaaataacaattc 283714
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>gb|AY842302.1| Thellungiella halophila zeaxanthin epoxidase (ZEP) mRNA, complete cds
          Length = 2162

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 363  gccttcttgtctgaaccaaactcgatg 389
            |||||||| ||||||||||||||||||
Sbjct: 1982 gccttcttatctgaaccaaactcgatg 1956
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>ref|NM_180954.1| Arabidopsis thaliana ABA1 (ABA DEFICIENT 1); zeaxanthin epoxidase
            AT5G67030 (ABA1) transcript variant AT5G67030.1 mRNA,
            complete cds
          Length = 2373

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 363  gccttcttgtctgaaccaaactcgatg 389
            |||||||| ||||||||||||||||||
Sbjct: 2062 gccttcttatctgaaccaaactcgatg 2036
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>ref|NM_126103.2| Arabidopsis thaliana ABA1 (ABA DEFICIENT 1); zeaxanthin epoxidase
            AT5G67030 (ABA1) transcript variant AT5G67030.2 mRNA,
            complete cds
          Length = 2377

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 363  gccttcttgtctgaaccaaactcgatg 389
            |||||||| ||||||||||||||||||
Sbjct: 2066 gccttcttatctgaaccaaactcgatg 2040
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>emb|CR388065.20| Zebrafish DNA sequence from clone DKEY-119P2 in linkage group 5,
             complete sequence
          Length = 122916

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 604   agagtgtcctctgctcatccctg 626
             |||||||||||||||||||||||
Sbjct: 77003 agagtgtcctctgctcatccctg 76981
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>gb|AY093145.1| Arabidopsis thaliana zeaxanthin epoxidase precursor (At5g67030) mRNA,
            complete cds
          Length = 2297

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 363  gccttcttgtctgaaccaaactcgatg 389
            |||||||| ||||||||||||||||||
Sbjct: 1996 gccttcttatctgaaccaaactcgatg 1970
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>gb|AY081304.1| Arabidopsis thaliana zeaxanthin epoxidase precursor (At5g67030) mRNA,
            complete cds
          Length = 2520

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 363  gccttcttgtctgaaccaaactcgatg 389
            |||||||| ||||||||||||||||||
Sbjct: 2209 gccttcttatctgaaccaaactcgatg 2183
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>gb|AF281655.1|AF281655 Arabidopsis thaliana zeaxanthin epoxidase (ZEP) mRNA, complete cds
          Length = 2314

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 363  gccttcttgtctgaaccaaactcgatg 389
            |||||||| ||||||||||||||||||
Sbjct: 2002 gccttcttatctgaaccaaactcgatg 1976
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>gb|BT002560.1| Arabidopsis thaliana zeaxanthin epoxidase precursor (At5g67030) mRNA,
            complete cds
          Length = 2178

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 363  gccttcttgtctgaaccaaactcgatg 389
            |||||||| ||||||||||||||||||
Sbjct: 2121 gccttcttatctgaaccaaactcgatg 2095
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>gb|AF134578.1|AF134578 Arabidopsis thaliana zeaxanthin epoxidase mRNA, complete cds
          Length = 2323

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 363  gccttcttgtctgaaccaaactcgatg 389
            |||||||| ||||||||||||||||||
Sbjct: 2057 gccttcttatctgaaccaaactcgatg 2031
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>dbj|AB030296.1| Arabidopsis thaliana AtABA1 mRNA, complete cds
          Length = 2345

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 363  gccttcttgtctgaaccaaactcgatg 389
            |||||||| ||||||||||||||||||
Sbjct: 2062 gccttcttatctgaaccaaactcgatg 2036
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>gb|AC154262.1| Mus musculus chromosome 14 clone RP24-304G19, complete sequence
          Length = 162962

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 183    aaaaattacaattccttttctt 204
              ||||||||||||||||||||||
Sbjct: 132787 aaaaattacaattccttttctt 132766
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>gb|AF283761.1|AF283761 Arabidopsis thaliana zeaxanthin epoxidase (ZEP) gene, complete cds
          Length = 3605

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 364  ccttcttgtctgaaccaaactcgatg 389
            ||||||| ||||||||||||||||||
Sbjct: 3238 ccttcttatctgaaccaaactcgatg 3213
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>gb|AF134577.1|AF134577 Arabidopsis thaliana zeaxanthin epoxidase gene, complete cds
          Length = 4807

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 364  ccttcttgtctgaaccaaactcgatg 389
            ||||||| ||||||||||||||||||
Sbjct: 3745 ccttcttatctgaaccaaactcgatg 3720
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>dbj|AB026640.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K8A10
          Length = 31132

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 364   ccttcttgtctgaaccaaactcgatg 389
             ||||||| ||||||||||||||||||
Sbjct: 26568 ccttcttatctgaaccaaactcgatg 26593
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>emb|CT571274.6| Mouse DNA sequence from clone RP24-142M17 on chromosome 14, complete
              sequence
          Length = 178159

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 183    aaaaattacaattccttttctt 204
              ||||||||||||||||||||||
Sbjct: 128657 aaaaattacaattccttttctt 128636
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>gb|AC103777.14| Homo sapiens chromosome 8, clone RP11-460G23, complete sequence
          Length = 164588

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 488    ggtcaaatagaaacccttgtt 508
              |||||||||||||||||||||
Sbjct: 125779 ggtcaaatagaaacccttgtt 125799
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>gb|AC006991.3|AC006991 Homo sapiens BAC clone RP11-270H4 from Y, complete sequence
          Length = 173242

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 603    gagagtgtcctctgctcatcc 623
              |||||||||||||||||||||
Sbjct: 142378 gagagtgtcctctgctcatcc 142398
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>gb|AC009947.2|AC009947 Homo sapiens BAC clone RP11-39P20 from Y, complete sequence
          Length = 149230

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 603   gagagtgtcctctgctcatcc 623
             |||||||||||||||||||||
Sbjct: 22639 gagagtgtcctctgctcatcc 22619
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>ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P3 and inverted repeat IR2
               (P1-P2-P3-IR2@) on chromosome Y
          Length = 4538292

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 603     gagagtgtcctctgctcatcc 623
               |||||||||||||||||||||
Sbjct: 4401156 gagagtgtcctctgctcatcc 4401176



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 603     gagagtgtcctctgctcatcc 623
               |||||||||||||||||||||
Sbjct: 1647684 gagagtgtcctctgctcatcc 1647664
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>gb|AC131687.4| Mus musculus BAC clone RP23-379C1 from 14, complete sequence
          Length = 176044

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 509    cttgcatgtgatagtagcatg 529
              |||||||||||||||||||||
Sbjct: 158657 cttgcatgtgatagtagcatg 158637
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>emb|AL844881.5| Mouse DNA sequence from clone RP23-244B19 on chromosome 2, complete
             sequence
          Length = 219340

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 492   aaatagaaacccttgttcttg 512
             |||||||||||||||||||||
Sbjct: 31326 aaatagaaacccttgttcttg 31346
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>gb|CP000025.1| Campylobacter jejuni RM1221, complete genome
          Length = 1777831

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 169    atcttgatgagtacaaaaattacaattc 196
              ||||||||||||| |||||| |||||||
Sbjct: 984508 atcttgatgagtataaaaataacaattc 984535
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>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete
               genome
          Length = 3397754

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 170     tcttgatgagtacaaaaatt 189
               ||||||||||||||||||||
Sbjct: 1314619 tcttgatgagtacaaaaatt 1314638
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 185      aaattacaattccttttctt 204
                ||||||||||||||||||||
Sbjct: 34148352 aaattacaattccttttctt 34148371
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>gb|AC130335.7| Homo sapiens chromosome 8, clone RP13-944D21, complete sequence
          Length = 121868

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 234   actgaagaatgctacagtgg 253
             ||||||||||||||||||||
Sbjct: 29954 actgaagaatgctacagtgg 29935
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>gb|AC146548.11| Medicago truncatula clone mth2-2p3, complete sequence
          Length = 129327

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 83   tacccctattgtacaccctc 102
            ||||||||||||||||||||
Sbjct: 8056 tacccctattgtacaccctc 8075
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>gb|CP000302.1| Shewanella denitrificans OS217, complete genome
          Length = 4545906

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 196     ccttttcttggcggtgatgc 215
               ||||||||||||||||||||
Sbjct: 3710763 ccttttcttggcggtgatgc 3710744
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>emb|AL353730.13| Human DNA sequence from clone RP11-55P9 on chromosome 9, complete
             sequence
          Length = 147810

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 355   ggaacatggccttcttgtct 374
             ||||||||||||||||||||
Sbjct: 17183 ggaacatggccttcttgtct 17164
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>gb|AC105180.8| Homo sapiens chromosome 8, clone RP11-345J1, complete sequence
          Length = 174617

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 234   actgaagaatgctacagtgg 253
             ||||||||||||||||||||
Sbjct: 46165 actgaagaatgctacagtgg 46184
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>emb|CR628336.1| Legionella pneumophila str. Paris complete genome
          Length = 3503610

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 170     tcttgatgagtacaaaaatt 189
               ||||||||||||||||||||
Sbjct: 1327540 tcttgatgagtacaaaaatt 1327559
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>gb|AC160145.6| Mus musculus 10 BAC RP24-160D12 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 155235

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 92    tgtacaccctcagttctttc 111
             ||||||||||||||||||||
Sbjct: 96594 tgtacaccctcagttctttc 96613
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 185      aaattacaattccttttctt 204
                ||||||||||||||||||||
Sbjct: 34238824 aaattacaattccttttctt 34238843
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>gb|AC113191.13| Homo sapiens chromosome 8, clone RP11-598P20, complete sequence
          Length = 166669

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 138   tcagaagctattcaaaaccctgtt 161
             ||||||||||||||||| ||||||
Sbjct: 99157 tcagaagctattcaaaagcctgtt 99180
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>gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete
              sequence
          Length = 163828

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 185    aaattacaattccttttctt 204
              ||||||||||||||||||||
Sbjct: 112164 aaattacaattccttttctt 112183
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>dbj|AP002840.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-159N11, complete
             sequence
          Length = 177031

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 608   tgtcctctgctcatccctga 627
             ||||||||||||||||||||
Sbjct: 99900 tgtcctctgctcatccctga 99881
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>gb|AC133935.3| Mus musculus BAC clone RP24-387M21 from 3, complete sequence
          Length = 182101

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 246   tacagtggctggtgacaagg 265
             ||||||||||||||||||||
Sbjct: 63651 tacagtggctggtgacaagg 63632
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>emb|AL671478.9| Mouse DNA sequence from clone RP23-110A15 on chromosome X, complete
             sequence
          Length = 208695

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 176   tgagtacaaaaattacaattcctt 199
             |||||||||||||| |||||||||
Sbjct: 69405 tgagtacaaaaattccaattcctt 69382


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,117,914
Number of Sequences: 3902068
Number of extensions: 5117914
Number of successful extensions: 85666
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85407
Number of HSP's gapped (non-prelim): 252
length of query: 662
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 639
effective length of database: 17,143,297,704
effective search space: 10954567232856
effective search space used: 10954567232856
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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