ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags23j17 |
|---|---|
| Clone Library Name | barley_pub |
>BSH_ARATH (P93045) Chromatin structure remodeling complex protein BSH| (Protein bushy) (SNF5 homolog) Length = 240 Score = 79.3 bits (194), Expect = 8e-15 Identities = 41/75 (54%), Positives = 55/75 (73%), Gaps = 1/75 (1%) Frame = -3 Query: 593 DPEVGPAIAVCIREQLYEIASQTVSAMREAKMSKK-RRAPEFASNSKAMNNAVDMFKYFG 417 DPEVGPA+A IREQLYEIA Q+V++ RE+++SKK RR + S SKA ++D+ K F Sbjct: 142 DPEVGPAVAFAIREQLYEIAIQSVASARESRLSKKGRRGSDHGSASKASGLSMDLMKLFS 201 Query: 416 SKGSVIRKRKEWYLY 372 K SV+RKRK+ +Y Sbjct: 202 FKSSVVRKRKDLDVY 216
>DPOL_ADE04 (P87503) DNA polymerase (EC 2.7.7.7)| Length = 1193 Score = 32.7 bits (73), Expect = 0.81 Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 9/72 (12%) Frame = +3 Query: 351 HDIYNRLVQVPLLPFPNDASFAPK-----ILEHVH----CVVHGFTIRSKFWCSPFLRHF 503 HD+ +Q P L FP F K +++HVH C G + K CS RHF Sbjct: 186 HDVVQHQMQAPRLHFP--LKFLVKGTQVQLVQHVHPVQRCEHCGRLYKHKHECSARRRHF 243 Query: 504 SFSHSRNSLTSN 539 F H NS +SN Sbjct: 244 YFHHI-NSHSSN 254
>KP6T_UMV6 (P16948) KP6 killer toxin precursor (Killer protein 6) [Contains:| KP6 killer toxin alpha subunit (VP10); KP6 killer toxin beta subunit (VP12.5)] Length = 219 Score = 30.8 bits (68), Expect = 3.1 Identities = 15/49 (30%), Positives = 26/49 (53%) Frame = +3 Query: 30 TDRMRSRFQSNISST*HDPQCRGLGKQGIYLYSTSSTGAAQAVHNDGDP 176 +D +R++F S+ SS ++ CR L K+ I +T + +H D P Sbjct: 81 SDDLRNQFYSHCSSLNNNMSCRSLSKRTIQDSATDTVDLGAELHRDDPP 129
>LPXK_BORPE (Q7VVB2) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A| 4'-kinase) Length = 347 Score = 30.8 bits (68), Expect = 3.1 Identities = 21/64 (32%), Positives = 28/64 (43%) Frame = -2 Query: 273 ARTEELPSSREELAAASLPFLPVKCQRVLVCM*DLRRCAQLEQRQCWR*NIGKYPAFLDP 94 A T LP + A A PF + +LV D +CA L+ + W +G DP Sbjct: 278 AHTLALP---DHYAYAQSPFTALDADLILVTAKDAIKCAALDDPRLWAVQVG--TRLSDP 332 Query: 93 DTGD 82 D GD Sbjct: 333 DFGD 336
>LPXK_BORPA (Q7W7F7) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A| 4'-kinase) Length = 347 Score = 30.8 bits (68), Expect = 3.1 Identities = 21/64 (32%), Positives = 28/64 (43%) Frame = -2 Query: 273 ARTEELPSSREELAAASLPFLPVKCQRVLVCM*DLRRCAQLEQRQCWR*NIGKYPAFLDP 94 A T LP + A A PF + +LV D +CA L+ + W +G DP Sbjct: 278 AHTLALP---DHYAYAQSPFTALDADLILVTAKDAIKCAALDDPRLWAVQVG--TRLSDP 332 Query: 93 DTGD 82 D GD Sbjct: 333 DFGD 336
>LPXK_BORBR (Q7WKU5) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A| 4'-kinase) Length = 347 Score = 30.8 bits (68), Expect = 3.1 Identities = 21/64 (32%), Positives = 28/64 (43%) Frame = -2 Query: 273 ARTEELPSSREELAAASLPFLPVKCQRVLVCM*DLRRCAQLEQRQCWR*NIGKYPAFLDP 94 A T LP + A A PF + +LV D +CA L+ + W +G DP Sbjct: 278 AHTLALP---DHYAYAQSPFTALDADLILVTAKDAIKCAALDDPRLWAVQVG--TRLSDP 332 Query: 93 DTGD 82 D GD Sbjct: 333 DFGD 336
>EPHB4_HUMAN (P54760) Ephrin type-B receptor 4 precursor (EC 2.7.10.1)| (Tyrosine-protein kinase receptor HTK) Length = 987 Score = 30.4 bits (67), Expect = 4.0 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = -1 Query: 271 EDGRIAEQP*RACSCQPSLPACQVST 194 EDG+ AEQP CSC P A + +T Sbjct: 241 EDGQWAEQPVTGCSCAPGFEAAEGNT 266
>RFCL_METKA (Q8TZC5) Replication factor C large subunit (RFC large subunit)| (Clamp loader large subunit) Length = 510 Score = 30.0 bits (66), Expect = 5.3 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%) Frame = -3 Query: 593 DPEVGPAI---AVCIREQLYEIASQTVSAMREAKMSKKRRAPEFASNSKAMNNAVD 435 DP+V + A+ +RE+L +I + V E+ + +KR E +K + AV+ Sbjct: 429 DPQVAQRVYQRALRVREKLRKIRRERVKGAMESMLERKREESEVEEEAKEIEEAVE 484
>CASL_MOUSE (O35177) Enhancer of filamentation 1 (MEF1) (CRK-associated| substrate-related protein) (CAS-L) (p105) (Protein NEDD9) (Neural precursor cell expressed developmentally down-regulated protein 9) Length = 833 Score = 29.6 bits (65), Expect = 6.9 Identities = 17/51 (33%), Positives = 24/51 (47%) Frame = +3 Query: 120 LYSTSSTGAAQAVHNDGDPTYILELVDT*QAGREGWQLQALHGCSAILPSS 272 LY A + GD IL +++ G EGW L +LHG I+P + Sbjct: 11 LYDNVPECAEELAFRKGD---ILTVIEQNTGGLEGWWLCSLHGRQGIVPGN 58
>CASL_HUMAN (Q14511) Enhancer of filamentation 1 (HEF1) (CRK-associated| substrate-related protein) (CAS-L) (CasL) (p105) (Protein NEDD9) (NY-REN-12 antigen) Length = 834 Score = 29.6 bits (65), Expect = 6.9 Identities = 17/51 (33%), Positives = 24/51 (47%) Frame = +3 Query: 120 LYSTSSTGAAQAVHNDGDPTYILELVDT*QAGREGWQLQALHGCSAILPSS 272 LY A + GD IL +++ G EGW L +LHG I+P + Sbjct: 11 LYDNVPECAEELAFRKGD---ILTVIEQNTGGLEGWWLCSLHGRQGIVPGN 58
>ACTN_ANOGA (Q7PKQ5) Alpha-actinin, sarcomeric (F-actin cross linking protein)| Length = 922 Score = 29.3 bits (64), Expect = 9.0 Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 5/80 (6%) Frame = +3 Query: 354 DIYNRLVQVPLLPFPNDASFAPK-----ILEHVHCVVHGFTIRSKFWCSPFLRHFSFSHS 518 D+ + + +P + P+D PK I+ +V C H F + +PF+ H + + Sbjct: 215 DVAEKYLDIPRMLDPDDLINTPKPDERAIMTYVSCYYHAFQGAQQPGSTPFVIHLTKTGL 274 Query: 519 RNSLTSNLIKLLTDANSYCR 578 L T AN C+ Sbjct: 275 SYRFFVRLFAAETAANRICK 294 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,615,951 Number of Sequences: 219361 Number of extensions: 1449443 Number of successful extensions: 3595 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 3514 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3593 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5196311029 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
