ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags23j16 |
|---|---|
| Clone Library Name | barley_pub |
>ELOF1_ORYSA (Q8LHP0) Transcription elongation factor 1 homolog| Length = 89 Score = 135 bits (341), Expect = 6e-32 Identities = 63/68 (92%), Positives = 66/68 (97%) Frame = -2 Query: 468 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEANCRICQESFSTTINALTEPIDIYSE*ID 289 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEA+CRICQE+FSTT+NALTEPIDIYSE ID Sbjct: 16 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTVNALTEPIDIYSEWID 75 Query: 288 ECERVNAV 265 ECERVN V Sbjct: 76 ECERVNNV 83
>ELOF1_ARATH (Q8LEF3) Transcription elongation factor 1 homolog| Length = 120 Score = 122 bits (305), Expect = 1e-27 Identities = 57/66 (86%), Positives = 61/66 (92%) Frame = -2 Query: 468 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEANCRICQESFSTTINALTEPIDIYSE*ID 289 MDKLDT+FSCPFCNHGSSVEC IDMK+LIG+A CRIC+ESFSTTI ALTE IDIYSE ID Sbjct: 16 MDKLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESFSTTITALTEAIDIYSEWID 75 Query: 288 ECERVN 271 ECERVN Sbjct: 76 ECERVN 81
>ELF1_YEAST (P36053) Transcription elongation factor 1| Length = 145 Score = 83.2 bits (204), Expect = 5e-16 Identities = 35/67 (52%), Positives = 48/67 (71%) Frame = -2 Query: 468 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEANCRICQESFSTTINALTEPIDIYSE*ID 289 + KLDT F+C FCNH SV C +D KN IG +C+IC +SF T IN+L++P+D+YS+ D Sbjct: 16 VQKLDTKFNCLFCNHEKSVSCTLDKKNSIGTLSCKICGQSFQTRINSLSQPVDVYSDWFD 75 Query: 288 ECERVNA 268 E VN+ Sbjct: 76 AVEEVNS 82
>ELOF1_CAEEL (Q9XVZ8) Transcription elongation factor 1 homolog| Length = 84 Score = 79.3 bits (194), Expect = 7e-15 Identities = 32/63 (50%), Positives = 44/63 (69%) Frame = -2 Query: 459 LDTVFSCPFCNHGSSVECRIDMKNLIGEANCRICQESFSTTINALTEPIDIYSE*IDECE 280 LDT F+CPFCNH E ++D + +G +CR+C E F T IN L+EPID+YS+ +D CE Sbjct: 20 LDTQFNCPFCNHERVCEVKMDREKNVGYISCRVCSEDFQTNINYLSEPIDVYSDWVDACE 79 Query: 279 RVN 271 + N Sbjct: 80 QAN 82
>ELOF1_DROME (Q8MQI6) Transcription elongation factor 1 homolog| Length = 82 Score = 73.6 bits (179), Expect = 4e-13 Identities = 30/66 (45%), Positives = 42/66 (63%) Frame = -2 Query: 468 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEANCRICQESFSTTINALTEPIDIYSE*ID 289 ++ LD F+CPFCNH S E ++D + CR+C E F T IN L+EPID+Y++ +D Sbjct: 17 IEPLDQQFNCPFCNHEKSCEVKMDKSRNTAKITCRVCLEDFQTGINFLSEPIDVYNDWVD 76 Query: 288 ECERVN 271 CE N Sbjct: 77 ACETAN 82
>ELOF1_SCHPO (O13868) Transcription elongation factor 1 homolog| Length = 107 Score = 71.6 bits (174), Expect = 1e-12 Identities = 30/62 (48%), Positives = 42/62 (67%) Frame = -2 Query: 459 LDTVFSCPFCNHGSSVECRIDMKNLIGEANCRICQESFSTTINALTEPIDIYSE*IDECE 280 LDT F+C FCNH SV C +D ++ +G +C+IC +S I AL+ PID+YS+ ID C+ Sbjct: 19 LDTTFTCLFCNHEKSVSCSLDKQSGVGNLHCKICGQSHQCLITALSAPIDVYSDWIDACD 78 Query: 279 RV 274 V Sbjct: 79 AV 80
>ELOF1_MANSE (Q9U501) Transcription elongation factor 1 homolog| Length = 82 Score = 70.9 bits (172), Expect = 3e-12 Identities = 29/66 (43%), Positives = 40/66 (60%) Frame = -2 Query: 468 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEANCRICQESFSTTINALTEPIDIYSE*ID 289 ++ LD F+CPFCNH S E ++D C +C E F TT N L+EPID+Y++ +D Sbjct: 17 IEPLDQQFNCPFCNHEKSCEVKMDRAKNTAMIQCTVCLEDFHTTTNVLSEPIDVYNDWVD 76 Query: 288 ECERVN 271 CE N Sbjct: 77 ACESAN 82
>ELOF1_MOUSE (P60003) Transcription elongation factor 1 homolog| Length = 83 Score = 70.5 bits (171), Expect = 3e-12 Identities = 29/63 (46%), Positives = 40/63 (63%) Frame = -2 Query: 459 LDTVFSCPFCNHGSSVECRIDMKNLIGEANCRICQESFSTTINALTEPIDIYSE*IDECE 280 L+T F+CPFCNH S + ++D G +C +C E F T I L+EP+D+YS+ ID CE Sbjct: 20 LETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLSEPVDVYSDWIDACE 79 Query: 279 RVN 271 N Sbjct: 80 AAN 82
>ELOF1_HUMAN (P60002) Transcription elongation factor 1 homolog| Length = 83 Score = 70.5 bits (171), Expect = 3e-12 Identities = 29/63 (46%), Positives = 40/63 (63%) Frame = -2 Query: 459 LDTVFSCPFCNHGSSVECRIDMKNLIGEANCRICQESFSTTINALTEPIDIYSE*IDECE 280 L+T F+CPFCNH S + ++D G +C +C E F T I L+EP+D+YS+ ID CE Sbjct: 20 LETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLSEPVDVYSDWIDACE 79 Query: 279 RVN 271 N Sbjct: 80 AAN 82
>ELOF1_ENCCU (Q8STS7) Transcription elongation factor 1 homolog| Length = 80 Score = 62.8 bits (151), Expect = 7e-10 Identities = 26/60 (43%), Positives = 38/60 (63%) Frame = -2 Query: 462 KLDTVFSCPFCNHGSSVECRIDMKNLIGEANCRICQESFSTTINALTEPIDIYSE*IDEC 283 +L+ F+CP CNH + V+C + + G ANC +C+ SF+ N LT ID+YS +DEC Sbjct: 18 RLEKRFNCPVCNHENVVQCTVKKTLMKGFANCSVCEASFACDANKLTTGIDVYSAWVDEC 77
>GLGA_PROMT (Q46LU1) Glycogen synthase (EC 2.4.1.21) (Starch [bacterial| glycogen] synthase) Length = 487 Score = 32.0 bits (71), Expect = 1.3 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Frame = +1 Query: 298 FAVYINRLSQRIYGGAEAFLADSTIRLTNQILHINSAFNAAPMVAERAG-KDRVELVHPL 474 F Y + LS+ IYGGA+AFL S + + A P+V + G D VE +P+ Sbjct: 333 FLTYDDALSRLIYGGADAFLMPSRFEPCGISQLLAMRYGAIPIVRKVGGLVDTVEPYNPM 392
>GLGA_SYNEL (Q8DKU2) Glycogen synthase (EC 2.4.1.21) (Starch [bacterial| glycogen] synthase) Length = 474 Score = 29.6 bits (65), Expect = 6.5 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = +1 Query: 304 VYINRLSQRIYGGAEAFLADSTIRLTNQILHINSAFNAAPMVAERAG 444 +Y + LS+RIYGGA+AF+ S I + P+V G Sbjct: 335 LYSDVLSRRIYGGADAFIMPSRFEPCGISQMIALRYGCVPIVRRTGG 381 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,167,162 Number of Sequences: 219361 Number of extensions: 1358416 Number of successful extensions: 3808 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 3720 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3807 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4929664480 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
