ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags23j16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT018083.1| Zea mays clone EL01N0552A10.c mRNA sequence 268 2e-68
2gb|AY109647.1| Zea mays CL5260_1 mRNA sequence 268 2e-68
3ref|NM_193086.2| Oryza sativa (japonica cultivar-group), mRNA 186 5e-44
4dbj|AK061633.1| Oryza sativa (japonica cultivar-group) cDNA clon... 186 5e-44
5dbj|AK120972.1| Oryza sativa (japonica cultivar-group) cDNA clon... 184 2e-43
6dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 113 7e-22
7dbj|AP004339.3| Oryza sativa (japonica cultivar-group) genomic D... 113 7e-22
8dbj|AK120292.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 5e-04
9gb|AC113312.7| Mus musculus chromosome 7, clone RP23-440K7, comp... 50 0.008
10gb|AC122017.5| Mus musculus BAC clone RP24-361J4 from 7, complet... 50 0.008
11gb|AC079145.4| Homo sapiens BAC clone RP11-42N12 from 2, complet... 44 0.50
12gb|AF287263.1|AF287263 Mus musculus ATP-binding cassette 1, sub-... 42 2.0
13dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
14dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
15dbj|AP003431.2| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
16dbj|AP004997.2| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
17dbj|AP004799.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
18dbj|AP005899.1| Homo sapiens genomic DNA, chromosome 18 clone:RP... 42 2.0
19emb|CT025839.2| Medicago truncatula chromosome 5 clone mth4-19c2... 42 2.0
20emb|AL772397.3| Mouse DNA sequence from clone RP23-95M14 on chro... 42 2.0
21ref|NM_119739.3| Arabidopsis thaliana unknown protein AT4G35730 ... 40 7.9
22ref|NM_101213.2| Arabidopsis thaliana sulfotransferase AT1G13430... 40 7.9
23ref|NM_123971.1| Arabidopsis thaliana unknown protein AT5G46030 ... 40 7.9
24ref|XM_633714.1| Dictyostelium discoideum hypothetical protein (... 40 7.9
25gb|AC168206.7| Mus musculus chromosome 1, clone RP23-17B20, comp... 40 7.9
26ref|XM_478424.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.9
27gb|AC099582.7| Mus musculus chromosome 1, clone RP23-188D7, comp... 40 7.9
28gb|AC115880.11| Mus musculus chromosome 9, clone RP24-365N15, co... 40 7.9
29gb|AC133956.4| Mus musculus BAC clone RP23-347E10 from chromosom... 40 7.9
30gb|AC122837.4| Mus musculus BAC clone RP23-189N3 from 16, comple... 40 7.9
31gb|AC007321.2| Homo sapiens BAC clone RP11-507C1 from 7, complet... 40 7.9
32gb|AC013470.10| Homo sapiens BAC clone RP11-472F21 from 7, compl... 40 7.9
33gb|AC146192.2| Pan troglodytes BAC clone RP43-35D13 from 7, comp... 40 7.9
34gb|AC146749.23| Medicago truncatula clone mth2-145a1, complete s... 40 7.9
35emb|CR450692.5| Zebrafish DNA sequence from clone CH211-198J13 i... 40 7.9
36emb|AL161588.2|ATCHRIV84 Arabidopsis thaliana DNA chromosome 4, ... 40 7.9
37emb|AL161587.2|ATCHRIV83 Arabidopsis thaliana DNA chromosome 4, ... 40 7.9
38emb|AL031135.1|ATF8D20 Arabidopsis thaliana DNA chromosome 4, BA... 40 7.9
39emb|CR762478.7| Zebrafish DNA sequence from clone DKEY-250B10 in... 40 7.9
40gb|CP000264.1| Jannaschia sp. CCS1, complete genome 40 7.9
41ref|XM_689612.1| PREDICTED: Danio rerio similar to mastermind-li... 40 7.9
42gb|BT006515.1| Arabidopsis thaliana At5g46030 gene, complete cds 40 7.9
43dbj|AK035777.1| Mus musculus 16 days neonate cerebellum cDNA, RI... 40 7.9
44gb|BT006116.1| Arabidopsis thaliana clone U51132 putative steroi... 40 7.9
45gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 40 7.9
46emb|BX834003.1|CNS0A1VY Arabidopsis thaliana Full-length cDNA Co... 40 7.9
47emb|BX833577.1|CNS0A1VS Arabidopsis thaliana Full-length cDNA Co... 40 7.9
48gb|AC147274.3| Pan troglodytes BAC clone RP43-113D16 from chromo... 40 7.9
49gb|AY085452.1| Arabidopsis thaliana clone 15222 mRNA, complete s... 40 7.9
50gb|AC011810.8|AC011810 Arabidopsis thaliana chromosome I BAC T6J... 40 7.9
51gb|AF250324.1|AF250324 Homo sapiens chromosome 4q35 BAC clones R... 40 7.9
52gb|AC027134.4|AC027134 Arabidopsis thaliana chromosome I BAC F13... 40 7.9
53emb|BX649639.4| Zebrafish DNA sequence from clone CH211-102G22 i... 40 7.9
54dbj|AP005103.5| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
55dbj|AP005320.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
56dbj|AK118984.1| Arabidopsis thaliana At1g13430 mRNA for unknown ... 40 7.9
57dbj|AB006698.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 7.9
58dbj|AK121812.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.9
59gb|BT002010.1| Arabidopsis thaliana putative protein (At5g46030)... 40 7.9
60emb|BX469908.10| Zebrafish DNA sequence from clone DKEY-249P7 in... 40 7.9
61emb|AL691450.15| Mouse DNA sequence from clone RP23-20F9 on chro... 40 7.9 
>gb|BT018083.1| Zea mays clone EL01N0552A10.c mRNA sequence
          Length = 875

 Score =  268 bits (135), Expect = 2e-68
 Identities = 231/263 (87%)
 Strand = Plus / Minus

                                                                       
Query: 266 acagcgttgacgcgctcgcactcatcgattcattcgctgtatatatcaataggctcagtc 325
           |||| |||||| ||||| |||||||| || ||||| || |||||||||||||||||||| 
Sbjct: 581 acagtgttgacacgctcacactcatcaatccattcactatatatatcaataggctcagtg 522

                                                                       
Query: 326 agcgcatttatggtggtgctgaagctttcctggcagattcgacaattcgcctcaccaatc 385
           || ||||| |  || ||||||||| ||||||| ||||||| ||||   || || ||||||
Sbjct: 521 agtgcattaacagttgtgctgaagttttcctgacagattctacaagatgcttcgccaatc 462

                                                                       
Query: 386 agattcttcatatcaattcggcattcaacgctgctcccatggttgcagaacgggcaggaa 445
           ||||||||||| ||||||||||| ||||| || ||||| ||||||||||| |||||||||
Sbjct: 461 agattcttcatgtcaattcggcactcaacactactcccgtggttgcagaatgggcaggaa 402

                                                                       
Query: 446 aagaccgtgtcgagcttgtccatccgcttcttagggggtggcttagcagctgactttctc 505
           ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 401 aagacagtgtcaagcttgtccatccgcttcttaggaggtggcttagcagctgactttctc 342

                                  
Query: 506 ttccccatggttcaacttgtttt 528
           |||||||||||||| ||| ||||
Sbjct: 341 ttccccatggttcagcttctttt 319
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>gb|AY109647.1| Zea mays CL5260_1 mRNA sequence
          Length = 1314

 Score =  268 bits (135), Expect = 2e-68
 Identities = 231/263 (87%)
 Strand = Plus / Plus

                                                                        
Query: 266  acagcgttgacgcgctcgcactcatcgattcattcgctgtatatatcaataggctcagtc 325
            |||| |||||| ||||| |||||||| || ||||| || |||||||||||||||||||| 
Sbjct: 812  acagtgttgacacgctcacactcatcaatccattcactatatatatcaataggctcagtg 871

                                                                        
Query: 326  agcgcatttatggtggtgctgaagctttcctggcagattcgacaattcgcctcaccaatc 385
            || ||||| |  || ||||||||| ||||||| ||||||| ||||   || || ||||||
Sbjct: 872  agtgcattaacagttgtgctgaagttttcctgacagattctacaagatgcttcgccaatc 931

                                                                        
Query: 386  agattcttcatatcaattcggcattcaacgctgctcccatggttgcagaacgggcaggaa 445
            ||||||||||| ||||||||||| ||||| || ||||| ||||||||||| |||||||||
Sbjct: 932  agattcttcatgtcaattcggcactcaacactactcccgtggttgcagaatgggcaggaa 991

                                                                        
Query: 446  aagaccgtgtcgagcttgtccatccgcttcttagggggtggcttagcagctgactttctc 505
            ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 992  aagacagtgtcaagcttgtccatccgcttcttaggaggtggcttagcagctgactttctc 1051

                                   
Query: 506  ttccccatggttcaacttgtttt 528
            |||||||||||||| ||| ||||
Sbjct: 1052 ttccccatggttcagcttctttt 1074
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>ref|NM_193086.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 728

 Score =  186 bits (94), Expect = 5e-44
 Identities = 211/250 (84%)
 Strand = Plus / Minus

                                                                       
Query: 271 gttgacgcgctcgcactcatcgattcattcgctgtatatatcaataggctcagtcagcgc 330
           |||||| |||||||||||||| || |||||||| ||||| || || || |||||||| ||
Sbjct: 435 gttgacacgctcgcactcatcaatccattcgctatatatgtcgattggttcagtcagtgc 376

                                                                       
Query: 331 atttatggtggtgctgaagctttcctggcagattcgacaattcgcctcaccaatcagatt 390
           ||| |  |||||||||||| ||||||| ||||| | |||    ||||| || ||||| ||
Sbjct: 375 attgacagtggtgctgaagttttcctgacagatcctacatgaagcctcgccgatcaggtt 316

                                                                       
Query: 391 cttcatatcaattcggcattcaacgctgctcccatggttgcagaacgggcaggaaaagac 450
           |||||||||||| ||||||||||| || || ||||| |||||||| ||||||||||| ||
Sbjct: 315 cttcatatcaatccggcattcaacactactgccatgattgcagaatgggcaggaaaatac 256

                                                                       
Query: 451 cgtgtcgagcttgtccatccgcttcttagggggtggcttagcagctgactttctcttccc 510
            || || ||||||||||||| ||||||||| ||||||||||| |||||||| ||||| ||
Sbjct: 255 agtatcaagcttgtccatcctcttcttaggtggtggcttagccgctgacttcctctttcc 196

                     
Query: 511 catggttcaa 520
           ||||| ||||
Sbjct: 195 catggctcaa 186



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 164 tggctgaaggtggcagccaataacacca 191
           |||||||||||||||| ||||| |||||
Sbjct: 525 tggctgaaggtggcagtcaatagcacca 498
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>dbj|AK061633.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-A04, full
           insert sequence
          Length = 728

 Score =  186 bits (94), Expect = 5e-44
 Identities = 211/250 (84%)
 Strand = Plus / Minus

                                                                       
Query: 271 gttgacgcgctcgcactcatcgattcattcgctgtatatatcaataggctcagtcagcgc 330
           |||||| |||||||||||||| || |||||||| ||||| || || || |||||||| ||
Sbjct: 435 gttgacacgctcgcactcatcaatccattcgctatatatgtcgattggttcagtcagtgc 376

                                                                       
Query: 331 atttatggtggtgctgaagctttcctggcagattcgacaattcgcctcaccaatcagatt 390
           ||| |  |||||||||||| ||||||| ||||| | |||    ||||| || ||||| ||
Sbjct: 375 attgacagtggtgctgaagttttcctgacagatcctacatgaagcctcgccgatcaggtt 316

                                                                       
Query: 391 cttcatatcaattcggcattcaacgctgctcccatggttgcagaacgggcaggaaaagac 450
           |||||||||||| ||||||||||| || || ||||| |||||||| ||||||||||| ||
Sbjct: 315 cttcatatcaatccggcattcaacactactgccatgattgcagaatgggcaggaaaatac 256

                                                                       
Query: 451 cgtgtcgagcttgtccatccgcttcttagggggtggcttagcagctgactttctcttccc 510
            || || ||||||||||||| ||||||||| ||||||||||| |||||||| ||||| ||
Sbjct: 255 agtatcaagcttgtccatcctcttcttaggtggtggcttagccgctgacttcctctttcc 196

                     
Query: 511 catggttcaa 520
           ||||| ||||
Sbjct: 195 catggctcaa 186



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 164 tggctgaaggtggcagccaataacacca 191
           |||||||||||||||| ||||| |||||
Sbjct: 525 tggctgaaggtggcagtcaatagcacca 498
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>dbj|AK120972.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023041G12, full
           insert sequence
          Length = 770

 Score =  184 bits (93), Expect = 2e-43
 Identities = 219/261 (83%)
 Strand = Plus / Minus

                                                                       
Query: 260 tctccgacagcgttgacgcgctcgcactcatcgattcattcgctgtatatatcaataggc 319
           |||||||||  |||||| |||||||||||||| || |||||||| ||||| || || || 
Sbjct: 451 tctccgacattgttgacacgctcgcactcatcaatccattcgctatatatgtcgattggt 392

                                                                       
Query: 320 tcagtcagcgcatttatggtggtgctgaagctttcctggcagattcgacaattcgcctca 379
           |||||||| ||||| |  |||||||||||| ||||||| ||||| | |||    ||||| 
Sbjct: 391 tcagtcagtgcattgacagtggtgctgaagttttcctgacagatcctacatgaagcctcg 332

                                                                       
Query: 380 ccaatcagattcttcatatcaattcggcattcaacgctgctcccatggttgcagaacggg 439
           || ||||| |||||||||||||| ||||||||||| || || ||||| | |||||| |||
Sbjct: 331 ccgatcaggttcttcatatcaatccggcattcaacactactgccatgatcgcagaatggg 272

                                                                       
Query: 440 caggaaaagaccgtgtcgagcttgtccatccgcttcttagggggtggcttagcagctgac 499
           |||||||| || || || ||||||||||||| ||||||||| ||||||||||| ||||||
Sbjct: 271 caggaaaatacagtatcaagcttgtccatcctcttcttaggtggtggcttagccgctgac 212

                                
Query: 500 tttctcttccccatggttcaa 520
           || ||||| ||||||| ||||
Sbjct: 211 ttcctctttcccatggctcaa 191



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 164 tggctgaaggtggcagccaataacacca 191
           |||||||||||||||| ||||| |||||
Sbjct: 530 tggctgaaggtggcagtcaatagcacca 503
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  113 bits (57), Expect = 7e-22
 Identities = 102/117 (87%)
 Strand = Plus / Minus

                                                                            
Query: 404      cggcattcaacgctgctcccatggttgcagaacgggcaggaaaagaccgtgtcgagcttg 463
                ||||||||||| || || ||||| |||||||| ||||||||||| || || || ||||||
Sbjct: 26117669 cggcattcaacactactgccatgattgcagaatgggcaggaaaatacagtatcaagcttg 26117610

                                                                         
Query: 464      tccatccgcttcttagggggtggcttagcagctgactttctcttccccatggttcaa 520
                ||||||| ||||||||| ||||||||||| |||||||| ||||| ||||||| ||||
Sbjct: 26117609 tccatcctcttcttaggtggtggcttagccgctgacttcctctttcccatggctcaa 26117553



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                 
Query: 271      gttgacgcgctcgcactcatcgattcattcgct 303
                |||||| |||||||||||||| || ||||||||
Sbjct: 26118546 gttgacacgctcgcactcatcaatccattcgct 26118514



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 164      tggctgaaggtggcagccaataacacca 191
                |||||||||||||||| ||||| |||||
Sbjct: 26118636 tggctgaaggtggcagtcaatagcacca 26118609



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 242      catggatcatcatcatcatc 261
                ||||||||||||||||||||
Sbjct: 19887512 catggatcatcatcatcatc 19887493
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>dbj|AP004339.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
            clone:P0519E12
          Length = 152448

 Score =  113 bits (57), Expect = 7e-22
 Identities = 102/117 (87%)
 Strand = Plus / Minus

                                                                        
Query: 404  cggcattcaacgctgctcccatggttgcagaacgggcaggaaaagaccgtgtcgagcttg 463
            ||||||||||| || || ||||| |||||||| ||||||||||| || || || ||||||
Sbjct: 9527 cggcattcaacactactgccatgattgcagaatgggcaggaaaatacagtatcaagcttg 9468

                                                                     
Query: 464  tccatccgcttcttagggggtggcttagcagctgactttctcttccccatggttcaa 520
            ||||||| ||||||||| ||||||||||| |||||||| ||||| ||||||| ||||
Sbjct: 9467 tccatcctcttcttaggtggtggcttagccgctgacttcctctttcccatggctcaa 9411



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 271   gttgacgcgctcgcactcatcgattcattcgct 303
             |||||| |||||||||||||| || ||||||||
Sbjct: 10404 gttgacacgctcgcactcatcaatccattcgct 10372



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 164   tggctgaaggtggcagccaataacacca 191
             |||||||||||||||| ||||| |||||
Sbjct: 10494 tggctgaaggtggcagtcaatagcacca 10467
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>dbj|AK120292.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050K04, full
           insert sequence
          Length = 876

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                      
Query: 275 acgcgctcgcactcatcgattcattcgctgtatatatcaataggctcagtcagcgcatt 333
           ||||||||||| || ||||| |||||||||||||| || || || |||||||| |||||
Sbjct: 340 acgcgctcgcattcgtcgatccattcgctgtatatgtcgatgggttcagtcagagcatt 282
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>gb|AC113312.7| Mus musculus chromosome 7, clone RP23-440K7, complete sequence
          Length = 215675

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                      
Query: 495   ctgactttctcttccccatggttca 519
             |||||||||||||||||||||||||
Sbjct: 25587 ctgactttctcttccccatggttca 25611
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>gb|AC122017.5| Mus musculus BAC clone RP24-361J4 from 7, complete sequence
          Length = 158807

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                      
Query: 495   ctgactttctcttccccatggttca 519
             |||||||||||||||||||||||||
Sbjct: 12565 ctgactttctcttccccatggttca 12541
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>gb|AC079145.4| Homo sapiens BAC clone RP11-42N12 from 2, complete sequence
          Length = 137870

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 240   ctcatggatcatcatcatcatc 261
             ||||||||||||||||||||||
Sbjct: 53483 ctcatggatcatcatcatcatc 53462
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>gb|AF287263.1|AF287263 Mus musculus ATP-binding cassette 1, sub-family A, member 1 (Abca1) gene,
              complete cds
          Length = 278572

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 155    ctacaaacatggctgaaggtg 175
              |||||||||||||||||||||
Sbjct: 205941 ctacaaacatggctgaaggtg 205961
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                
Query: 275     acgcgctcgcactcatcgattcattcgctgtat 307
               ||||||||||| || ||||| ||||||||||||
Sbjct: 1816870 acgcgctcgcattcgtcgatccattcgctgtat 1816902
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 241      tcatggatcatcatcatcatc 261
                |||||||||||||||||||||
Sbjct: 38673883 tcatggatcatcatcatcatc 38673863
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>dbj|AP003431.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1099D03
          Length = 191022

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 241    tcatggatcatcatcatcatc 261
              |||||||||||||||||||||
Sbjct: 131856 tcatggatcatcatcatcatc 131836
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>dbj|AP004997.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0030G11
          Length = 143943

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                               
Query: 275    acgcgctcgcactcatcgattcattcgctgtat 307
              ||||||||||| || ||||| ||||||||||||
Sbjct: 134882 acgcgctcgcattcgtcgatccattcgctgtat 134914
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>dbj|AP004799.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0585B01
          Length = 133231

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 275   acgcgctcgcactcatcgattcattcgctgtat 307
             ||||||||||| || ||||| ||||||||||||
Sbjct: 53514 acgcgctcgcattcgtcgatccattcgctgtat 53546
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>dbj|AP005899.1| Homo sapiens genomic DNA, chromosome 18 clone:RP11-143J12, complete
             sequence
          Length = 155671

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 16    atggatccatagttcctacac 36
             |||||||||||||||||||||
Sbjct: 57012 atggatccatagttcctacac 56992
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>emb|CT025839.2| Medicago truncatula chromosome 5 clone mth4-19c21, COMPLETE SEQUENCE
          Length = 210117

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 512    atggttcaacttgtttttctccctt 536
              ||||||| |||||||||||||||||
Sbjct: 142816 atggttctacttgtttttctccctt 142792
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>emb|AL772397.3| Mouse DNA sequence from clone RP23-95M14 on chromosome 4, complete
              sequence
          Length = 230672

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 155    ctacaaacatggctgaaggtg 175
              |||||||||||||||||||||
Sbjct: 188771 ctacaaacatggctgaaggtg 188751
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>ref|NM_119739.3| Arabidopsis thaliana unknown protein AT4G35730 mRNA, complete cds
          Length = 1588

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 242  catggatcatcatcatcatc 261
            ||||||||||||||||||||
Sbjct: 999  catggatcatcatcatcatc 1018
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>ref|NM_101213.2| Arabidopsis thaliana sulfotransferase AT1G13430 mRNA, complete cds
          Length = 1248

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 247 atcatcatcatcatctccga 266
           ||||||||||||||||||||
Sbjct: 450 atcatcatcatcatctccga 469
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>ref|NM_123971.1| Arabidopsis thaliana unknown protein AT5G46030 mRNA, complete cds
          Length = 686

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 280 ctcgcactcatcgattcattcgct 303
           ||||||||||||||| ||||||||
Sbjct: 356 ctcgcactcatcgatccattcgct 333



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 379 accaatcagattcttcatatcaat 402
           ||||||||||| ||||||||||||
Sbjct: 257 accaatcagatgcttcatatcaat 234
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>ref|XM_633714.1| Dictyostelium discoideum hypothetical protein (DDB0218555), partial
            mRNA
          Length = 2412

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 244  tggatcatcatcatcatctc 263
            ||||||||||||||||||||
Sbjct: 1335 tggatcatcatcatcatctc 1316
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>gb|AC168206.7| Mus musculus chromosome 1, clone RP23-17B20, complete sequence
          Length = 245358

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 157    acaaacatggctgaaggtgg 176
              ||||||||||||||||||||
Sbjct: 175705 acaaacatggctgaaggtgg 175686
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>ref|XM_478424.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2115

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 242  catggatcatcatcatcatc 261
            ||||||||||||||||||||
Sbjct: 1043 catggatcatcatcatcatc 1024
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>gb|AC099582.7| Mus musculus chromosome 1, clone RP23-188D7, complete sequence
          Length = 192016

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 157    acaaacatggctgaaggtgg 176
              ||||||||||||||||||||
Sbjct: 103287 acaaacatggctgaaggtgg 103306
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>gb|AC115880.11| Mus musculus chromosome 9, clone RP24-365N15, complete sequence
          Length = 202851

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 160   aacatggctgaaggtggcag 179
             ||||||||||||||||||||
Sbjct: 95384 aacatggctgaaggtggcag 95403
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>gb|AC133956.4| Mus musculus BAC clone RP23-347E10 from chromosome 16, complete sequence
          Length = 171261

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 522    ttgtttttctcccttcaaaa 541
              ||||||||||||||||||||
Sbjct: 147368 ttgtttttctcccttcaaaa 147349
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>gb|AC122837.4| Mus musculus BAC clone RP23-189N3 from 16, complete sequence
          Length = 199988

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 522  ttgtttttctcccttcaaaa 541
            ||||||||||||||||||||
Sbjct: 3209 ttgtttttctcccttcaaaa 3190
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>gb|AC007321.2| Homo sapiens BAC clone RP11-507C1 from 7, complete sequence
          Length = 158770

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 513 tggttcaacttgtttttctc 532
           ||||||||||||||||||||
Sbjct: 164 tggttcaacttgtttttctc 145
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>gb|AC013470.10| Homo sapiens BAC clone RP11-472F21 from 7, complete sequence
          Length = 170723

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 513    tggttcaacttgtttttctc 532
              ||||||||||||||||||||
Sbjct: 170687 tggttcaacttgtttttctc 170668
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>gb|AC146192.2| Pan troglodytes BAC clone RP43-35D13 from 7, complete sequence
          Length = 178260

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 513   tggttcaacttgtttttctc 532
             ||||||||||||||||||||
Sbjct: 19834 tggttcaacttgtttttctc 19815
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>gb|AC146749.23| Medicago truncatula clone mth2-145a1, complete sequence
          Length = 130793

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 5     acacaatnctgatggatccatag 27
             ||||||| |||||||||||||||
Sbjct: 12695 acacaatgctgatggatccatag 12717
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>emb|CR450692.5| Zebrafish DNA sequence from clone CH211-198J13 in linkage group 2,
             complete sequence
          Length = 180976

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 432   agaacgggcaggaaaagacc 451
             ||||||||||||||||||||
Sbjct: 18186 agaacgggcaggaaaagacc 18205
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>emb|AL161588.2|ATCHRIV84 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 84
          Length = 195452

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 242  catggatcatcatcatcatc 261
            ||||||||||||||||||||
Sbjct: 4526 catggatcatcatcatcatc 4545
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>emb|AL161587.2|ATCHRIV83 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83
          Length = 197859

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 242    catggatcatcatcatcatc 261
              ||||||||||||||||||||
Sbjct: 197385 catggatcatcatcatcatc 197404
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>emb|AL031135.1|ATF8D20 Arabidopsis thaliana DNA chromosome 4, BAC clone F8D20 (ESSAII project)
          Length = 94315

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 242   catggatcatcatcatcatc 261
             ||||||||||||||||||||
Sbjct: 76625 catggatcatcatcatcatc 76644
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>emb|CR762478.7| Zebrafish DNA sequence from clone DKEY-250B10 in linkage group 13,
             complete sequence
          Length = 53110

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 522   ttgtttttctcccttcaaaa 541
             ||||||||||||||||||||
Sbjct: 18986 ttgtttttctcccttcaaaa 19005
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>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 433     gaacgggcaggaaaagaccg 452
               ||||||||||||||||||||
Sbjct: 3214392 gaacgggcaggaaaagaccg 3214373
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>ref|XM_689612.1| PREDICTED: Danio rerio similar to mastermind-like 3 (LOC566340),
           mRNA
          Length = 471

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 247 atcatcatcatcatctccga 266
           ||||||||||||||||||||
Sbjct: 414 atcatcatcatcatctccga 395
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>gb|BT006515.1| Arabidopsis thaliana At5g46030 gene, complete cds
          Length = 363

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 280 ctcgcactcatcgattcattcgct 303
           ||||||||||||||| ||||||||
Sbjct: 234 ctcgcactcatcgatccattcgct 211



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 379 accaatcagattcttcatatcaat 402
           ||||||||||| ||||||||||||
Sbjct: 135 accaatcagatgcttcatatcaat 112
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>dbj|AK035777.1| Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:9630003L17 product:SIMILAR TO
            MAP-KINASE ACTIVATING DEATH DOMAIN homolog [Mus
            musculus], full insert sequence
          Length = 4657

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 495  ctgactttctcttccccatg 514
            ||||||||||||||||||||
Sbjct: 3756 ctgactttctcttccccatg 3775
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>gb|BT006116.1| Arabidopsis thaliana clone U51132 putative steroid sulfotransferase
           (At1g13430) mRNA, complete cds
          Length = 1087

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 247 atcatcatcatcatctccga 266
           ||||||||||||||||||||
Sbjct: 420 atcatcatcatcatctccga 439
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>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 247    atcatcatcatcatctccgacagc 270
              ||||||||||||||| ||||||||
Sbjct: 471484 atcatcatcatcatcgccgacagc 471461
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>emb|BX834003.1|CNS0A1VY Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL8ZD11 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 628

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 379 accaatcagattcttcatatcaat 402
           ||||||||||| ||||||||||||
Sbjct: 202 accaatcagatgcttcatatcaat 179
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>emb|BX833577.1|CNS0A1VS Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL63ZA12 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 654

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 280 ctcgcactcatcgattcattcgct 303
           ||||||||||||||| ||||||||
Sbjct: 321 ctcgcactcatcgatccattcgct 298



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 379 accaatcagattcttcatatcaat 402
           ||||||||||| ||||||||||||
Sbjct: 222 accaatcagatgcttcatatcaat 199
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>gb|AC147274.3| Pan troglodytes BAC clone RP43-113D16 from chromosome 7, complete
             sequence
          Length = 168606

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 513   tggttcaacttgtttttctc 532
             ||||||||||||||||||||
Sbjct: 25559 tggttcaacttgtttttctc 25578
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>gb|AY085452.1| Arabidopsis thaliana clone 15222 mRNA, complete sequence
          Length = 687

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 280 ctcgcactcatcgattcattcgct 303
           ||||||||||||||| ||||||||
Sbjct: 356 ctcgcactcatcgatccattcgct 333



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 379 accaatcagattcttcatatcaat 402
           ||||||||||| ||||||||||||
Sbjct: 257 accaatcagatgcttcatatcaat 234
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>gb|AC011810.8|AC011810 Arabidopsis thaliana chromosome I BAC T6J4 genomic sequence, complete
             sequence
          Length = 103157

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 247   atcatcatcatcatctccga 266
             ||||||||||||||||||||
Sbjct: 85059 atcatcatcatcatctccga 85078
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>gb|AF250324.1|AF250324 Homo sapiens chromosome 4q35 BAC clones RPCI-11-463J17 and
              RPCI-6-92G13RCB2, complete sequence
          Length = 245708

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 369    aattcgcctcaccaatcagattct 392
              |||| |||||||||||||||||||
Sbjct: 119061 aattggcctcaccaatcagattct 119038
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>gb|AC027134.4|AC027134 Arabidopsis thaliana chromosome I BAC F13B4 genomic sequence, complete
             sequence
          Length = 102183

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 247   atcatcatcatcatctccga 266
             ||||||||||||||||||||
Sbjct: 37752 atcatcatcatcatctccga 37771
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>emb|BX649639.4| Zebrafish DNA sequence from clone CH211-102G22 in linkage group 22,
             complete sequence
          Length = 169981

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 241   tcatggatcatcatcatcat 260
             ||||||||||||||||||||
Sbjct: 71625 tcatggatcatcatcatcat 71606
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>dbj|AP005103.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0036M16
          Length = 158880

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 242   catggatcatcatcatcatc 261
             ||||||||||||||||||||
Sbjct: 52162 catggatcatcatcatcatc 52143
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>dbj|AP005320.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0650C03
          Length = 144337

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 242    catggatcatcatcatcatc 261
              ||||||||||||||||||||
Sbjct: 127671 catggatcatcatcatcatc 127652
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>dbj|AK118984.1| Arabidopsis thaliana At1g13430 mRNA for unknown protein, complete
           cds, clone: RAFL21-32-D02
          Length = 1248

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 247 atcatcatcatcatctccga 266
           ||||||||||||||||||||
Sbjct: 450 atcatcatcatcatctccga 469
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>dbj|AB006698.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCL19
          Length = 84510

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 280   ctcgcactcatcgattcattcgct 303
             ||||||||||||||| ||||||||
Sbjct: 28685 ctcgcactcatcgatccattcgct 28662
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>dbj|AK121812.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033098C24, full
           insert sequence
          Length = 2185

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 242 catggatcatcatcatcatc 261
           ||||||||||||||||||||
Sbjct: 843 catggatcatcatcatcatc 824
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>gb|BT002010.1| Arabidopsis thaliana putative protein (At5g46030) mRNA, complete
           cds
          Length = 672

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 280 ctcgcactcatcgattcattcgct 303
           ||||||||||||||| ||||||||
Sbjct: 340 ctcgcactcatcgatccattcgct 317



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 379 accaatcagattcttcatatcaat 402
           ||||||||||| ||||||||||||
Sbjct: 241 accaatcagatgcttcatatcaat 218
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>emb|BX469908.10| Zebrafish DNA sequence from clone DKEY-249P7 in linkage group 20,
             complete sequence
          Length = 108923

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 81    cacaatatcatcgcttgttt 100
             ||||||||||||||||||||
Sbjct: 94332 cacaatatcatcgcttgttt 94313
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>emb|AL691450.15| Mouse DNA sequence from clone RP23-20F9 on chromosome 2, complete
             sequence
          Length = 181372

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 495   ctgactttctcttccccatg 514
             ||||||||||||||||||||
Sbjct: 84792 ctgactttctcttccccatg 84773


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,403,437
Number of Sequences: 3902068
Number of extensions: 4403437
Number of successful extensions: 206841
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 206400
Number of HSP's gapped (non-prelim): 436
length of query: 580
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 557
effective length of database: 17,143,297,704
effective search space: 9548816821128
effective search space used: 9548816821128
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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