ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags23j06 |
|---|---|
| Clone Library Name | barley_pub |
>IF33_ARATH (Q9C5Z2) Eukaryotic translation initiation factor 3 subunit 3| (eIF-3 gamma) (eIF3 p38 subunit) (eIF3h) Length = 337 Score = 272 bits (696), Expect = 5e-73 Identities = 129/170 (75%), Positives = 149/170 (87%) Frame = -2 Query: 614 TGEKLREKKLSWVDIFEEIPIKVSNSALVSAFMKELEPESPVSQCDFDRLKLSTAPFMER 435 TGEKLREK SW+DIFEEIPIKVSNSALVSAFM ELE ++PVSQ D+DRL ST PF+E Sbjct: 168 TGEKLREKNFSWMDIFEEIPIKVSNSALVSAFMTELETDTPVSQGDYDRLHSSTTPFLEN 227 Query: 434 NLEFMIGCMDGLSSEQNKFQYYYRNLGRQQSQQQAWLQKRRQENMSRKAAGEEPLPEEDP 255 N+EF+I CMD LS EQ KFQYYYRNL RQQ+QQQAWLQKRR ENM+RK+AGEEPLPEEDP Sbjct: 228 NMEFLIKCMDDLSMEQQKFQYYYRNLSRQQAQQQAWLQKRRTENMARKSAGEEPLPEEDP 287 Query: 254 SNPIFKPLPEPSRLEGYLVTNQISSYCNHINGVAGQSFNRLYLMKALQED 105 SNPIFK +PEPSRLE +L+TNQ+S++C INGVAGQ+F+RLYL KAL ++ Sbjct: 288 SNPIFKAIPEPSRLESFLITNQVSNFCGQINGVAGQNFSRLYLTKALHDN 337
>IF33_HUMAN (O15372) Eukaryotic translation initiation factor 3 subunit 3| (eIF-3 gamma) (eIF3 p40 subunit) (eIF3h) Length = 352 Score = 123 bits (309), Expect = 4e-28 Identities = 62/167 (37%), Positives = 107/167 (64%) Frame = -2 Query: 608 EKLREKKLSWVDIFEEIPIKVSNSALVSAFMKELEPESPVSQCDFDRLKLSTAPFMERNL 429 E L++ +++ +FEE+PI + NS L++ M ELE +S V+ + L L+++ + +NL Sbjct: 185 EALKKANITFEYMFEEVPIVIKNSHLINVLMWELEKKSAVAD-KHELLSLASSNHLGKNL 243 Query: 428 EFMIGCMDGLSSEQNKFQYYYRNLGRQQSQQQAWLQKRRQENMSRKAAGEEPLPEEDPSN 249 + ++ +D +S + K+ Y RN +QQ Q+ + Q+R+QENM R++ GE PLPEED S Sbjct: 244 QLLMDRVDEMSQDIVKYNTYMRNTSKQQQQKHQYQQRRQQENMQRQSRGEPPLPEEDLSK 303 Query: 248 PIFKPLPEPSRLEGYLVTNQISSYCNHINGVAGQSFNRLYLMKALQE 108 +FKP P+R++ L+ QI++YC +I Q+ +L++ +ALQE Sbjct: 304 -LFKPPQPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQE 349
>IF33_MOUSE (Q91WK2) Eukaryotic translation initiation factor 3 subunit 3| (eIF-3 gamma) (eIF3 p40 subunit) (eIF3h) Length = 352 Score = 122 bits (306), Expect = 8e-28 Identities = 61/167 (36%), Positives = 107/167 (64%) Frame = -2 Query: 608 EKLREKKLSWVDIFEEIPIKVSNSALVSAFMKELEPESPVSQCDFDRLKLSTAPFMERNL 429 E L++ +++ +FEE+PI + NS L++ M ELE +S V+ + L L+++ + ++L Sbjct: 185 EALKKASITFEHMFEEVPIVIKNSHLINVLMWELEKKSAVAD-KHELLSLASSNHLGKSL 243 Query: 428 EFMIGCMDGLSSEQNKFQYYYRNLGRQQSQQQAWLQKRRQENMSRKAAGEEPLPEEDPSN 249 + ++ +D +S + K+ Y RN +QQ Q+ + Q+R+QENM R++ GE PLPEED S Sbjct: 244 QLLMDRVDEMSQDIIKYNTYMRNTSKQQQQKHQYQQRRQQENMQRQSRGEPPLPEEDLSK 303 Query: 248 PIFKPLPEPSRLEGYLVTNQISSYCNHINGVAGQSFNRLYLMKALQE 108 +FKP P+R++ L+ QI++YC +I Q+ +L++ +ALQE Sbjct: 304 -LFKPHQAPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQE 349
>IF33_BOVIN (Q56JZ5) Eukaryotic translation initiation factor 3 subunit 3| (eIF-3 gamma) Length = 352 Score = 121 bits (304), Expect = 1e-27 Identities = 61/167 (36%), Positives = 106/167 (63%) Frame = -2 Query: 608 EKLREKKLSWVDIFEEIPIKVSNSALVSAFMKELEPESPVSQCDFDRLKLSTAPFMERNL 429 E L++ +++ +FEE+PI + NS L++ M ELE +S V+ + L L+++ + + L Sbjct: 185 EALKKGNITFEHMFEEVPIVIKNSHLINVLMWELEKKSAVAD-KHELLSLASSNHLGKTL 243 Query: 428 EFMIGCMDGLSSEQNKFQYYYRNLGRQQSQQQAWLQKRRQENMSRKAAGEEPLPEEDPSN 249 + ++ +D +S + K+ Y RN +QQ Q+ + Q+R+QENM R++ GE PLPEED S Sbjct: 244 QLLMDRVDEMSQDIVKYNTYMRNTSKQQQQKHQYQQRRQQENMQRQSRGEPPLPEEDLSK 303 Query: 248 PIFKPLPEPSRLEGYLVTNQISSYCNHINGVAGQSFNRLYLMKALQE 108 +FKP P+R++ L+ QI++YC +I Q+ +L++ +ALQE Sbjct: 304 -LFKPHQPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQE 349
>RP94_VARV (P33067) RNA polymerase-associated transcription-specificity factor| (RAP94) Length = 795 Score = 38.1 bits (87), Expect = 0.021 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 3/86 (3%) Frame = -2 Query: 602 LREKKLSWV---DIFEEIPIKVSNSALVSAFMKELEPESPVSQCDFDRLKLSTAPFMERN 432 LR+KK+S + D+ ++ + NS LVS+F ELEPE + + F+ L P++E+N Sbjct: 123 LRQKKISILVNDDVRGDVIVSYKNSDLVSSFNAELEPE--IKKIPFNMKNL--LPYLEKN 178 Query: 431 LEFMIGCMDGLSSEQNKFQYYYRNLG 354 L+ + S + F Y R++G Sbjct: 179 LDQL-----RFSKKYLDFAYLCRHIG 199
>RP94_VACCV (P68438) RNA-polymerase-associated transcription specificity factor| (RAP94) Length = 795 Score = 38.1 bits (87), Expect = 0.021 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 3/86 (3%) Frame = -2 Query: 602 LREKKLSWV---DIFEEIPIKVSNSALVSAFMKELEPESPVSQCDFDRLKLSTAPFMERN 432 LR+KK+S + D+ ++ + NS LVS+F ELEPE + + F+ L P++E+N Sbjct: 123 LRQKKISILVNDDVRGDVIVSYKNSDLVSSFNAELEPE--IKKIPFNMKNL--LPYLEKN 178 Query: 431 LEFMIGCMDGLSSEQNKFQYYYRNLG 354 L+ + S + F Y R++G Sbjct: 179 LDQL-----RFSKKYLDFAYLCRHIG 199
>RP94_VACCC (P68439) RNA polymerase-associated transcription-specificity factor| (RAP94) Length = 795 Score = 38.1 bits (87), Expect = 0.021 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 3/86 (3%) Frame = -2 Query: 602 LREKKLSWV---DIFEEIPIKVSNSALVSAFMKELEPESPVSQCDFDRLKLSTAPFMERN 432 LR+KK+S + D+ ++ + NS LVS+F ELEPE + + F+ L P++E+N Sbjct: 123 LRQKKISILVNDDVRGDVIVSYKNSDLVSSFNAELEPE--IKKIPFNMKNL--LPYLEKN 178 Query: 431 LEFMIGCMDGLSSEQNKFQYYYRNLG 354 L+ + S + F Y R++G Sbjct: 179 LDQL-----RFSKKYLDFAYLCRHIG 199
>RP94_VACCA (O57207) RNA polymerase-associated transcription-specificity factor| (RAP94) Length = 795 Score = 38.1 bits (87), Expect = 0.021 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 3/86 (3%) Frame = -2 Query: 602 LREKKLSWV---DIFEEIPIKVSNSALVSAFMKELEPESPVSQCDFDRLKLSTAPFMERN 432 LR+KK+S + D+ ++ + NS LVS+F ELEPE + + F+ L P++E+N Sbjct: 123 LRQKKISILVNDDVRGDVIVSYKNSDLVSSFNAELEPE--IKKIPFNMKNL--LPYLEKN 178 Query: 431 LEFMIGCMDGLSSEQNKFQYYYRNLG 354 L+ + S + F Y R++G Sbjct: 179 LDQL-----RFSKKYLDFAYLCRHIG 199
>RS3_RUBST (Q8VS60) 30S ribosomal protein S3| Length = 250 Score = 35.8 bits (81), Expect = 0.10 Identities = 17/58 (29%), Positives = 30/58 (51%) Frame = -2 Query: 602 LREKKLSWVDIFEEIPIKVSNSALVSAFMKELEPESPVSQCDFDRLKLSTAPFMERNL 429 +R + W D+ +++P V + +K P+S +SQ + RLK S F+E +L Sbjct: 15 IRTWESKWYDVDKKVPFLVGEDFKIRTLIKNHYPKSTISQIEIKRLKKSNDEFIEIDL 72
>RS3_FLADO (Q8VL42) 30S ribosomal protein S3| Length = 250 Score = 35.8 bits (81), Expect = 0.10 Identities = 17/58 (29%), Positives = 30/58 (51%) Frame = -2 Query: 602 LREKKLSWVDIFEEIPIKVSNSALVSAFMKELEPESPVSQCDFDRLKLSTAPFMERNL 429 +R + W D+ +++P V + +K P+S +SQ + RLK S F+E +L Sbjct: 15 IRTWESKWYDVDKKVPFLVGEDFKIRTLIKNHYPKSTISQIEIKRLKKSNDEFIEIDL 72
>RS3_ELYEP (P0A4C2) 30S ribosomal protein S3| Length = 250 Score = 35.8 bits (81), Expect = 0.10 Identities = 17/58 (29%), Positives = 30/58 (51%) Frame = -2 Query: 602 LREKKLSWVDIFEEIPIKVSNSALVSAFMKELEPESPVSQCDFDRLKLSTAPFMERNL 429 +R + W D+ +++P V + +K P+S +SQ + RLK S F+E +L Sbjct: 15 IRTWESKWYDVDKKVPFLVGEDFKIRTLIKNHYPKSTISQIEIKRLKKSNDEFIEIDL 72
>RS3_ELMPH (P0A4C1) 30S ribosomal protein S3| Length = 250 Score = 35.8 bits (81), Expect = 0.10 Identities = 17/58 (29%), Positives = 30/58 (51%) Frame = -2 Query: 602 LREKKLSWVDIFEEIPIKVSNSALVSAFMKELEPESPVSQCDFDRLKLSTAPFMERNL 429 +R + W D+ +++P V + +K P+S +SQ + RLK S F+E +L Sbjct: 15 IRTWESKWYDVDKKVPFLVGEDFKIRTLIKNHYPKSTISQIEIKRLKKSNDEFIEIDL 72
>RS3_ALDYE (Q8VS63) 30S ribosomal protein S3| Length = 250 Score = 35.8 bits (81), Expect = 0.10 Identities = 17/58 (29%), Positives = 30/58 (51%) Frame = -2 Query: 602 LREKKLSWVDIFEEIPIKVSNSALVSAFMKELEPESPVSQCDFDRLKLSTAPFMERNL 429 +R + W D+ +++P V + +K P+S +SQ + RLK S F+E +L Sbjct: 15 IRTWESKWYDVDKKVPFLVGEDFKIRTLIKNNYPKSTISQIEIKRLKKSNDEFIEIDL 72
>RS3_ZIZJU (Q8VS61) 30S ribosomal protein S3| Length = 250 Score = 35.4 bits (80), Expect = 0.13 Identities = 17/58 (29%), Positives = 30/58 (51%) Frame = -2 Query: 602 LREKKLSWVDIFEEIPIKVSNSALVSAFMKELEPESPVSQCDFDRLKLSTAPFMERNL 429 +R + W D+ +++P V + +K P+S +SQ + RLK S F+E +L Sbjct: 15 IRTWESKWYDVDKKVPFLVGEDFKIRPLIKNHYPKSTISQIEIKRLKKSNDEFIEIDL 72
>YHW1_YEAST (P38856) Hypothetical 71.7 kDa protein in REC104-SOL3 intergenic| region Length = 637 Score = 33.9 bits (76), Expect = 0.39 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 14/91 (15%) Frame = -2 Query: 392 EQNKFQYYYRNLGRQQSQQQAWLQKRRQENMSRK------AAGEEPL--------PEEDP 255 ++ +FQ +Y QQ QQQ Q+++Q+ ++ AG P+ P+ P Sbjct: 546 DKMEFQAHYTQNHLQQQQQQQQQQQQQQQQQPQQGYYVPATAGANPVTNITGTVQPQNFP 605 Query: 254 SNPIFKPLPEPSRLEGYLVTNQISSYCNHIN 162 P +P PE S+ + ++ NQ Y N++N Sbjct: 606 FYPQQQPQPEQSQTQQPVLGNQ---YANNLN 633
>SPB5_MOUSE (P70124) Serpin B5 precursor (Maspin) (Protease inhibitor 5)| Length = 375 Score = 33.5 bits (75), Expect = 0.51 Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 9/106 (8%) Frame = -2 Query: 596 EKKLSWVDIFEEIPIKVSNSA-LVSAFMKELEPESPVSQCDFDRLKLSTAPFMERNLE-- 426 E LS I ++ I V N+A V +MK+ PES +C F K T P NLE Sbjct: 145 EDILSENSISDQTKILVVNAAYFVGKWMKKF-PESETKECPFRISKTDTKPVQMMNLEAT 203 Query: 425 FMIGCMDGLSSE------QNKFQYYYRNLGRQQSQQQAWLQKRRQE 306 F +G +D +S + QNK L + + L+K Q+ Sbjct: 204 FCLGNIDDISCKIIELPFQNKHLSMLIVLPKDVEDESTGLEKIEQQ 249
>DRI_DROME (Q24573) Protein dead ringer (Protein retained)| Length = 911 Score = 32.3 bits (72), Expect = 1.1 Identities = 16/43 (37%), Positives = 27/43 (62%) Frame = -2 Query: 398 SSEQNKFQYYYRNLGRQQSQQQAWLQKRRQENMSRKAAGEEPL 270 S +Q + Q++++ +QQSQQQ LQ++RQ + S + E L Sbjct: 517 SQQQQQQQHHHQQQQQQQSQQQHHLQQQRQRSQSPDLSKHEAL 559
>PRP5_DEBHA (Q6BML1) Pre-mRNA-processing ATP-dependent RNA helicase PRP5 (EC| 3.6.1.-) Length = 913 Score = 32.0 bits (71), Expect = 1.5 Identities = 18/50 (36%), Positives = 29/50 (58%) Frame = -2 Query: 359 LGRQQSQQQAWLQKRRQENMSRKAAGEEPLPEEDPSNPIFKPLPEPSRLE 210 L R+Q Q AW+QKR+QEN ++ +G+ + D +N + L R+E Sbjct: 50 LKRRQEQLAAWMQKRQQEN--QEPSGKVTISATDETNIDKEKLIRQQRIE 97
>GLT_DROME (P33438) Glutactin precursor| Length = 1026 Score = 32.0 bits (71), Expect = 1.5 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 5/53 (9%) Frame = -2 Query: 395 SEQNKFQYYYRNLGRQQSQQQA-----WLQKRRQENMSRKAAGEEPLPEEDPS 252 SE+++ Q L R+Q +QQ L++ +QE ++ +EP PEE PS Sbjct: 812 SEEDREQQQQEQLRREQQEQQEREYQLQLEREQQEREQQERGQQEPGPEEYPS 864
>YN91_SCHPO (Q9Y808) Hypothetical protein C146.01 in chromosome II| Length = 1063 Score = 31.2 bits (69), Expect = 2.5 Identities = 22/97 (22%), Positives = 43/97 (44%) Frame = -2 Query: 401 LSSEQNKFQYYYRNLGRQQSQQQAWLQKRRQENMSRKAAGEEPLPEEDPSNPIFKPLPEP 222 L+ +Q +F + +Q+ QQQ Q+ +Q + ++ P E + + P Sbjct: 140 LTPQQRQFLLQQSQIQQQRQQQQQQSQQPQQTQQPQASSPTAPNTEANQQ----RSGSVP 195 Query: 221 SRLEGYLVTNQISSYCNHINGVAGQSFNRLYLMKALQ 111 R+ L Q+++ CN I + ++ N M+ LQ Sbjct: 196 GRIVPALTQQQLNNLCNQITALLARNGNPPIPMQKLQ 232
>MED12_HUMAN (Q93074) Mediator of RNA polymerase II transcription subunit 12| (Thyroid hormone receptor-associated protein complex 230 kDa component) (Trap230) (Activator-recruited cofactor 240 kDa component) (ARC240) (CAG repeat protein 45) (OPA-containin Length = 2212 Score = 31.2 bits (69), Expect = 2.5 Identities = 14/46 (30%), Positives = 25/46 (54%) Frame = -2 Query: 392 EQNKFQYYYRNLGRQQSQQQAWLQKRRQENMSRKAAGEEPLPEEDP 255 +Q + Q + +QQ QQQ Q++ Q+ ++AA +P P+ P Sbjct: 2125 QQQQQQQQQQQQQQQQQQQQQQQQQQHQQQQQQQAAPPQPQPQSQP 2170
>RAS_CRYNE (O74650) Ras-like protein| Length = 216 Score = 30.8 bits (68), Expect = 3.3 Identities = 15/36 (41%), Positives = 23/36 (63%) Frame = -1 Query: 378 PILLSQPRKATVTATGMASKEKAREHVEKGCWRGAV 271 P ++ P K+ ++A G + EK +HV+KGC RG V Sbjct: 180 PQAVNAPAKSQMSAVGGRAAEKD-DHVDKGCCRGCV 214
>NUMBL_HUMAN (Q9Y6R0) Numb-like protein (Numb-R)| Length = 609 Score = 30.8 bits (68), Expect = 3.3 Identities = 15/43 (34%), Positives = 24/43 (55%) Frame = -2 Query: 350 QQSQQQAWLQKRRQENMSRKAAGEEPLPEEDPSNPIFKPLPEP 222 QQ QQQ Q+++Q+ ++AA P+P P+ +P P P Sbjct: 427 QQQQQQQQQQQQQQQQQQQQAASVAPVPTMPPA---LQPFPAP 466
>FLHA_BUCBP (Q89AN5) Flagellar biosynthesis protein flhA| Length = 702 Score = 30.8 bits (68), Expect = 3.3 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 11/56 (19%) Frame = -2 Query: 299 SRKAAGEEPLPEEDPSNPIFK--------PLPEPSRLEGYLVTNQ---ISSYCNHI 165 S A+G PLP E+ S+PIFK L ++ +GY + IS++ NHI Sbjct: 446 SGNASGPLPLPAEETSDPIFKFKSFWITSELINQAKQKGYNIAEDSTVISTHLNHI 501
>FX4L1_HUMAN (Q9NU39) Forkhead box protein D4-like 1| Length = 408 Score = 30.4 bits (67), Expect = 4.3 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = -1 Query: 405 WSFIRAKQVPILLSQPRKATVTATGMASKEKAREHVEKGCWRGAVAR 265 WS+ Q P LS AT A+G +++ R H +G R V R Sbjct: 349 WSYCPLLQRPSSLSDNFAATAAASGGGLRQRLRSHQGRGAGRAPVGR 395
>SPB5_RAT (P70564) Serpin B5 precursor (Maspin) (Protease inhibitor 5)| Length = 375 Score = 30.0 bits (66), Expect = 5.6 Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 3/75 (4%) Frame = -2 Query: 572 IFEEIPIKVSNSA-LVSAFMKELEPESPVSQCDFDRLKLSTAPFMERNLE--FMIGCMDG 402 I ++ I V N+A V +MK+ PES +C F K T P NLE F +G +D Sbjct: 153 ISDQTKILVVNAAYFVGKWMKKF-PESETKECPFRINKTDTKPVQMMNLEATFCLGNIDD 211 Query: 401 LSSEQNKFQYYYRNL 357 ++ + + + ++L Sbjct: 212 INCKIIELPFQNKHL 226
>CMTA2_MOUSE (Q80Y50) Calmodulin-binding transcription activator 2| Length = 1208 Score = 30.0 bits (66), Expect = 5.6 Identities = 25/94 (26%), Positives = 42/94 (44%) Frame = -2 Query: 389 QNKFQYYYRNLGRQQSQQQAWLQKRRQENMSRKAAGEEPLPEEDPSNPIFKPLPEPSRLE 210 Q+KF+ YY QQS++ A L ++ + R+ P P PS P+ P+R + Sbjct: 1115 QSKFRSYYEQKRFQQSRRAAVLIQQHYRSYRRR-----PGPPHRPSGPL------PARNK 1163 Query: 209 GYLVTNQISSYCNHINGVAGQSFNRLYLMKALQE 108 G +T + I + +R+ +K QE Sbjct: 1164 GTFLTKKQDQAARKIMRFLRRCRHRMRELKQNQE 1197
>CJ084_PONPY (Q5R939) Protein C10orf84 homolog| Length = 233 Score = 30.0 bits (66), Expect = 5.6 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%) Frame = -2 Query: 440 ERNLEFMIGCMDGLSSEQ-NKFQYYYRNLGRQQSQQQAWLQKRRQENMSRKAAGEEPLPE 264 E N+ C G+ + NKFQ ++ Q+S + KRR+ + K E+ L Sbjct: 59 ESNVNAYEECPSGIPIDMWNKFQELHKKHSEQKSTTSRFRGKRRKRSRKDKLKNEKELHS 118 Query: 263 EDPSN 249 E SN Sbjct: 119 EPSSN 123
>CJ084_HUMAN (Q9H8W3) Protein C10orf84| Length = 233 Score = 30.0 bits (66), Expect = 5.6 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%) Frame = -2 Query: 440 ERNLEFMIGCMDGLSSEQ-NKFQYYYRNLGRQQSQQQAWLQKRRQENMSRKAAGEEPLPE 264 E N+ C G+ + NKFQ ++ Q+S + KRR+ + K E+ L Sbjct: 59 ESNVNAYEECPSGIPIDMWNKFQELHKKHSEQKSTTSRFRGKRRKRSRKDKLKNEKELHS 118 Query: 263 EDPSN 249 E SN Sbjct: 119 EPSSN 123
>SPB5_HUMAN (P36952) Serpin B5 precursor (Maspin) (Protease inhibitor 5)| Length = 375 Score = 29.6 bits (65), Expect = 7.3 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 9/92 (9%) Frame = -2 Query: 566 EEIPIKVSNSA-LVSAFMKELEPESPVSQCDFDRLKLSTAPFMERNLE--FMIGCMDGLS 396 ++ I V N+A V +MK+ PES +C F K T P N+E F +G +D ++ Sbjct: 155 DQTKILVVNAAYFVGKWMKKF-PESETKECPFRLNKTDTKPVQMMNMEATFCMGNIDSIN 213 Query: 395 SE------QNKFQYYYRNLGRQQSQQQAWLQK 318 + QNK + L + + L+K Sbjct: 214 CKIIELPFQNKHLSMFILLPKDVEDESTGLEK 245
>XYLS_SULSO (Q9P999) Alpha-xylosidase (EC 3.2.1.-)| Length = 731 Score = 29.3 bits (64), Expect = 9.6 Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 2/110 (1%) Frame = -2 Query: 614 TGEKLREKKLSWVDI-FEEIPIKVSNSALVSAFMKELEPESPVSQCDFDRLKLSTAPFME 438 TGEKL ++ V + + IP+ V + A++ K + +D + L P Sbjct: 593 TGEKLEGGRMMDVKVTLDTIPLFVRSGAVLPLLGKNVNNAEEY----WDVIDLRVYP--G 646 Query: 437 RNLEFMIGCMDGLSSEQNKFQYYYRNLGRQQSQQQAWLQKRRQE-NMSRK 291 +N F + DG++ E K +YY + + +Q+ + K+R E MS+K Sbjct: 647 KNGYFELYDDDGITYEYEKGKYYIIPITWDEDKQELTIGKKRGELEMSKK 696
>INVO_TARBA (P24711) Involucrin| Length = 387 Score = 29.3 bits (64), Expect = 9.6 Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 12/83 (14%) Frame = -2 Query: 401 LSSEQNKFQYYYRNLGRQQSQ---QQAWLQKRRQENMS---------RKAAGEEPLPEED 258 L +Q K Q +LG+QQ + Q+ L+K+ QE ++ E+ L E + Sbjct: 123 LGKQQQKTQEQEVHLGKQQQELQEQEVHLEKQLQEPQEVHLEKQLQEQEVHLEKQLQEPE 182 Query: 257 PSNPIFKPLPEPSRLEGYLVTNQ 189 P + K EP E YL Q Sbjct: 183 PELNLGKQQQEPQEQEAYLGKQQ 205
>BSN_RAT (O88778) Bassoon protein| Length = 3937 Score = 29.3 bits (64), Expect = 9.6 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 14/80 (17%) Frame = -2 Query: 404 GLSSEQNKFQYYYRNLGRQQSQQQAWLQKRRQENMSRKAAGEEPLP-----EEDP----- 255 G +S Q + Q + +QQ QQQ Q+++Q+ + ++A + P + P Sbjct: 3764 GTASRQPQTQQQQQQQQQQQQQQQQQQQQQQQQGLGQQAPQQAPSQARLQQQSQPTTRST 3823 Query: 254 ----SNPIFKPLPEPSRLEG 207 S+P KP P P+ G Sbjct: 3824 APAASHPAGKPQPGPTTAPG 3843
>YKF4_YEAST (P35732) Hypothetical 84.0 kDa protein in NUP120-CSE4 intergenic| region Length = 738 Score = 29.3 bits (64), Expect = 9.6 Identities = 18/78 (23%), Positives = 31/78 (39%) Frame = -2 Query: 392 EQNKFQYYYRNLGRQQSQQQAWLQKRRQENMSRKAAGEEPLPEEDPSNPIFKPLPEPSRL 213 EQ YY + +Q +QQQ LQ++ + A ++ P+ P + P+ + Sbjct: 441 EQLSQNYYTQQQQQQYAQQQHQLQQQYLSQQQQYAQQQQQHPQPQSQQPQSQQSPQSQKQ 500 Query: 212 EGYLVTNQISSYCNHING 159 + Q Y N G Sbjct: 501 GNNVAAQQYYMYQNQFPG 518
>CDX1_RAT (Q05095) Homeobox protein CDX-1 (Caudal-type homeobox protein 1)| (Fragment) Length = 123 Score = 29.3 bits (64), Expect = 9.6 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%) Frame = -2 Query: 362 NLGRQQSQQQAWLQKRR--QENMSRKAAGEEPLPEEDPSNPIFKPLP 228 NLG + Q + W Q RR + +++K ++ ++ P P PLP Sbjct: 41 NLGLTERQVKIWFQNRRAKERKVNKKKQQQQQQQQQQPMPPTQLPLP 87
>BAZ2B_HUMAN (Q9UIF8) Bromodomain adjacent to zinc finger domain 2B (hWALp4)| Length = 1972 Score = 29.3 bits (64), Expect = 9.6 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%) Frame = -2 Query: 353 RQQSQQQAWLQKRR---QENMSRKAAGEEPLPEEDPSNPIFKPLPEPSRLEGYLVTNQIS 183 +Q+ + + L K R Q + + A E P ED KPLPE R+ G +++ Sbjct: 835 KQEKRDEKRLNKERKLEQRRLELEMAKELKKPNEDMCLADQKPLPELPRIPGLVLSGSTF 894 Query: 182 SYC 174 S C Sbjct: 895 SDC 897
>DHX57_MOUSE (Q6P5D3) Putative ATP-dependent RNA helicase DHX57 (EC 3.6.1.-)| (DEAH box protein 57) Length = 1388 Score = 29.3 bits (64), Expect = 9.6 Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 3/94 (3%) Frame = -2 Query: 506 EPESPVSQCDFDRLKLSTAPFMERNLEFMIGCMDGLSSEQNKFQYYYRNLGRQQSQQQAW 327 EP+ P CD ++ K T P + + + + S Q K + R+L Q + + Sbjct: 70 EPKRPSRPCDSNKSKGETRPKWKPKAKVPLQTLHMTSENQEKVKALLRDLQEQGADAGSE 129 Query: 326 LQKRRQENMSRKAAGEE---PLPEEDPSNPIFKP 234 +E S GEE P +E PIF P Sbjct: 130 RGTSGEEEDSEPQCGEEQGWPAGQE----PIFLP 159 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 91,921,063 Number of Sequences: 219361 Number of extensions: 1883192 Number of successful extensions: 6360 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 6000 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6329 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5538924943 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
