ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags23i24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RNS3_STRAU (P30289) Guanyl-specific ribonuclease Sa3 precursor (... 30 6.0
2YB88_YEAST (P38330) Protein YBR238C 30 7.8

>RNS3_STRAU (P30289) Guanyl-specific ribonuclease Sa3 precursor (EC 3.1.27.3)|
           (RNase Sa3)
          Length = 141

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 570 VPARTTGWYCNYVEVTATGPHMGCAQQLFTVEQW 469
           +PA +TG+Y  Y  +T   P  G A+++ T +QW
Sbjct: 89  LPAHSTGYYHEYTVITPGSPTRG-ARRIITGQQW 121



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>YB88_YEAST (P38330) Protein YBR238C|
          Length = 731

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 223 NNRNWPAKTNHAHRSNRTTNSRSYFYNNNNMSH 321
           NN N  A+ N  + +N   N+R++ +NNN   H
Sbjct: 83  NNNNHLAQNNSNNSNNHHNNNRNHHHNNNRNHH 115


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,349,899
Number of Sequences: 219361
Number of extensions: 1117122
Number of successful extensions: 3097
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3045
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5881538857
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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