ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal1b12 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK102691.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033103D10, full insert sequence Length = 2549 Score = 119 bits (60), Expect = 6e-24 Identities = 85/94 (90%) Strand = Plus / Minus Query: 223 tggtgaggatgactgtgaatgtctccntggttctccaggggcatgtactgcgccatgatg 282 ||||||| |||| || ||| ||||| ||||| ||||||||||||||||| ||||||||| Sbjct: 2114 tggtgagaatgattgggaacatctccttggttgtccaggggcatgtactgggccatgatg 2055 Query: 283 gcgcggatctctgaatccatgtacctncggatcc 316 |||||||||||||||||||||||||| ||||||| Sbjct: 2054 gcgcggatctctgaatccatgtacctccggatcc 2021
>dbj|AK066617.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073B02, full insert sequence Length = 2553 Score = 119 bits (60), Expect = 6e-24 Identities = 85/94 (90%) Strand = Plus / Minus Query: 223 tggtgaggatgactgtgaatgtctccntggttctccaggggcatgtactgcgccatgatg 282 ||||||| |||| || ||| ||||| ||||| ||||||||||||||||| ||||||||| Sbjct: 2175 tggtgagaatgattgggaacatctccttggttgtccaggggcatgtactgggccatgatg 2116 Query: 283 gcgcggatctctgaatccatgtacctncggatcc 316 |||||||||||||||||||||||||| ||||||| Sbjct: 2115 gcgcggatctctgaatccatgtacctccggatcc 2082
>gb|AC123514.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0004B05, complete sequence Length = 121223 Score = 109 bits (55), Expect = 6e-21 Identities = 78/86 (90%) Strand = Plus / Plus Query: 223 tggtgaggatgactgtgaatgtctccntggttctccaggggcatgtactgcgccatgatg 282 ||||||| |||| || ||| ||||| ||||| ||||||||||||||||| ||||||||| Sbjct: 20529 tggtgagaatgattgggaacatctccttggttgtccaggggcatgtactgggccatgatg 20588 Query: 283 gcgcggatctctgaatccatgtacct 308 |||||||||||||||||||||||||| Sbjct: 20589 gcgcggatctctgaatccatgtacct 20614
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 109 bits (55), Expect = 6e-21 Identities = 78/86 (90%) Strand = Plus / Plus Query: 223 tggtgaggatgactgtgaatgtctccntggttctccaggggcatgtactgcgccatgatg 282 ||||||| |||| || ||| ||||| ||||| ||||||||||||||||| ||||||||| Sbjct: 782975 tggtgagaatgattgggaacatctccttggttgtccaggggcatgtactgggccatgatg 783034 Query: 283 gcgcggatctctgaatccatgtacct 308 |||||||||||||||||||||||||| Sbjct: 783035 gcgcggatctctgaatccatgtacct 783060
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 109 bits (55), Expect = 6e-21 Identities = 78/86 (90%) Strand = Plus / Plus Query: 223 tggtgaggatgactgtgaatgtctccntggttctccaggggcatgtactgcgccatgatg 282 ||||||| |||| || ||| ||||| ||||| ||||||||||||||||| ||||||||| Sbjct: 742236 tggtgagaatgattgggaacatctccttggttgtccaggggcatgtactgggccatgatg 742295 Query: 283 gcgcggatctctgaatccatgtacct 308 |||||||||||||||||||||||||| Sbjct: 742296 gcgcggatctctgaatccatgtacct 742321
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 109 bits (55), Expect = 6e-21 Identities = 78/86 (90%) Strand = Plus / Plus Query: 223 tggtgaggatgactgtgaatgtctccntggttctccaggggcatgtactgcgccatgatg 282 ||||||| |||| || ||| ||||| ||||| ||||||||||||||||| ||||||||| Sbjct: 742238 tggtgagaatgattgggaacatctccttggttgtccaggggcatgtactgggccatgatg 742297 Query: 283 gcgcggatctctgaatccatgtacct 308 |||||||||||||||||||||||||| Sbjct: 742298 gcgcggatctctgaatccatgtacct 742323
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 109 bits (55), Expect = 6e-21 Identities = 78/86 (90%) Strand = Plus / Plus Query: 223 tggtgaggatgactgtgaatgtctccntggttctccaggggcatgtactgcgccatgatg 282 ||||||| |||| || ||| ||||| ||||| ||||||||||||||||| ||||||||| Sbjct: 782975 tggtgagaatgattgggaacatctccttggttgtccaggggcatgtactgggccatgatg 783034 Query: 283 gcgcggatctctgaatccatgtacct 308 |||||||||||||||||||||||||| Sbjct: 783035 gcgcggatctctgaatccatgtacct 783060
>emb|BX842244.3|CNS0B0PN Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBb0006G23 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 12281 Score = 109 bits (55), Expect = 6e-21 Identities = 78/86 (90%) Strand = Plus / Plus Query: 223 tggtgaggatgactgtgaatgtctccntggttctccaggggcatgtactgcgccatgatg 282 ||||||| |||| || ||| ||||| ||||| ||||||||||||||||| ||||||||| Sbjct: 4747 tggtgagaatgattgggaacatctccttggttgtccaggggcatgtactgggccatgatg 4806 Query: 283 gcgcggatctctgaatccatgtacct 308 |||||||||||||||||||||||||| Sbjct: 4807 gcgcggatctctgaatccatgtacct 4832
>emb|BX000512.1|CNS08CE2 Oryza sativa chromosome 11, . BAC OSJNBa0025K19 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 181322 Score = 109 bits (55), Expect = 6e-21 Identities = 78/86 (90%) Strand = Plus / Minus Query: 223 tggtgaggatgactgtgaatgtctccntggttctccaggggcatgtactgcgccatgatg 282 ||||||| |||| || ||| ||||| ||||| ||||||||||||||||| ||||||||| Sbjct: 736 tggtgagaatgattgggaacatctccttggttgtccaggggcatgtactgggccatgatg 677 Query: 283 gcgcggatctctgaatccatgtacct 308 |||||||||||||||||||||||||| Sbjct: 676 gcgcggatctctgaatccatgtacct 651
>gb|AY110802.1| Zea mays CL50258_1 mRNA sequence Length = 661 Score = 101 bits (51), Expect = 1e-18 Identities = 91/105 (86%) Strand = Plus / Plus Query: 212 acatctcaatctggtgaggatgactgtgaatgtctccntggttctccaggggcatgtact 271 |||||||||| || |||| ||| || || | |||||| ||||| |||||||||||||||| Sbjct: 225 acatctcaatgtgatgagaatggctctggacgtctccttggttgtccaggggcatgtact 284 Query: 272 gcgccatgatggcgcggatctctgaatccatgtacctncggatcc 316 | ||||||||||| |||||||| || ||||||||||| ||||||| Sbjct: 285 gagccatgatggcacggatctcggagtccatgtacctccggatcc 329
>gb|AY104972.1| Zea mays PCO068557 mRNA sequence Length = 1725 Score = 85.7 bits (43), Expect = 8e-14 Identities = 65/73 (89%) Strand = Plus / Minus Query: 244 tctccntggttctccaggggcatgtactgcgccatgatggcgcggatctctgaatccatg 303 ||||| ||| | ||||| ||||||||||| |||||||||||||||||||| || |||||| Sbjct: 1528 tctccttggctgtccagaggcatgtactgggccatgatggcgcggatctccgagtccatg 1469 Query: 304 tacctncggatcc 316 ||||| ||||||| Sbjct: 1468 tacctccggatcc 1456
>gb|BT017302.1| Zea mays clone EL01N0316C05.c mRNA sequence Length = 622 Score = 79.8 bits (40), Expect = 5e-12 Identities = 51/55 (92%) Strand = Plus / Minus Query: 262 ggcatgtactgcgccatgatggcgcggatctctgaatccatgtacctncggatcc 316 ||||||||||| |||||||||||||||||||| || ||||||||||| ||||||| Sbjct: 246 ggcatgtactgggccatgatggcgcggatctccgagtccatgtacctccggatcc 192
>gb|AY105262.1| Zea mays PCO087823 mRNA sequence Length = 1974 Score = 79.8 bits (40), Expect = 5e-12 Identities = 52/56 (92%) Strand = Plus / Minus Query: 250 tggttctccaggggcatgtactgcgccatgatggcgcggatctctgaatccatgta 305 ||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 1505 tggttatccagaggcatgtactgagccatgatggcacggatctctgaatccatgta 1450
>gb|U79961.1|ZMU79961 Zea mays vacuolar sorting receptor homolog mRNA, partial cds Length = 822 Score = 79.8 bits (40), Expect = 5e-12 Identities = 52/56 (92%) Strand = Plus / Minus Query: 250 tggttctccaggggcatgtactgcgccatgatggcgcggatctctgaatccatgta 305 ||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 413 tggttatccagaggcatgtactgagccatgatggcacggatctctgaatccatgta 358
>ref|XM_479541.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2450 Score = 73.8 bits (37), Expect = 3e-10 Identities = 49/53 (92%) Strand = Plus / Minus Query: 253 ttctccaggggcatgtactgcgccatgatggcgcggatctctgaatccatgta 305 |||||||||||||||||||| |||||||| || || ||||||||||||||||| Sbjct: 2028 ttctccaggggcatgtactgagccatgatcgcacgaatctctgaatccatgta 1976
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 73.8 bits (37), Expect = 3e-10 Identities = 49/53 (92%) Strand = Plus / Plus Query: 253 ttctccaggggcatgtactgcgccatgatggcgcggatctctgaatccatgta 305 |||||||||||||||||||| |||||||| || || ||||||||||||||||| Sbjct: 28756380 ttctccaggggcatgtactgagccatgatcgcacgaatctctgaatccatgta 28756432
>dbj|AP005243.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1205_F02 Length = 112862 Score = 73.8 bits (37), Expect = 3e-10 Identities = 49/53 (92%) Strand = Plus / Plus Query: 253 ttctccaggggcatgtactgcgccatgatggcgcggatctctgaatccatgta 305 |||||||||||||||||||| |||||||| || || ||||||||||||||||| Sbjct: 63941 ttctccaggggcatgtactgagccatgatcgcacgaatctctgaatccatgta 63993
>dbj|AP005099.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0008J01 Length = 159900 Score = 73.8 bits (37), Expect = 3e-10 Identities = 49/53 (92%) Strand = Plus / Plus Query: 253 ttctccaggggcatgtactgcgccatgatggcgcggatctctgaatccatgta 305 |||||||||||||||||||| |||||||| || || ||||||||||||||||| Sbjct: 14066 ttctccaggggcatgtactgagccatgatcgcacgaatctctgaatccatgta 14118
>dbj|AK072667.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023134F15, full insert sequence Length = 2450 Score = 73.8 bits (37), Expect = 3e-10 Identities = 49/53 (92%) Strand = Plus / Minus Query: 253 ttctccaggggcatgtactgcgccatgatggcgcggatctctgaatccatgta 305 |||||||||||||||||||| |||||||| || || ||||||||||||||||| Sbjct: 2028 ttctccaggggcatgtactgagccatgatcgcacgaatctctgaatccatgta 1976
>gb|AF161719.1|AF161719 Triticum aestivum vacuolar targeting receptor bp-80 mRNA, complete cds Length = 2293 Score = 71.9 bits (36), Expect = 1e-09 Identities = 42/44 (95%) Strand = Plus / Minus Query: 262 ggcatgtactgcgccatgatggcgcggatctctgaatccatgta 305 ||||||||||| |||||||||||||||||||| ||||||||||| Sbjct: 1874 ggcatgtactgagccatgatggcgcggatctccgaatccatgta 1831
>dbj|AB006809.1| Cucurbita cv. Kurokawa Amakuri mRNA for PV72, complete cds Length = 2190 Score = 58.0 bits (29), Expect = 2e-05 Identities = 60/71 (84%) Strand = Plus / Minus Query: 244 tctccntggttctccaggggcatgtactgcgccatgatggcgcggatctctgaatccatg 303 ||||| ||||| |||| |||||| || || ||||||||||| || ||||| |||||||| Sbjct: 1879 tctccttggttgtccaagggcatatattgagccatgatggcccgtatctccgaatccata 1820 Query: 304 tacctncggat 314 ||||| ||||| Sbjct: 1819 tacctccggat 1809
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 56.0 bits (28), Expect = 7e-05 Identities = 40/44 (90%) Strand = Plus / Minus Query: 262 ggcatgtactgcgccatgatggcgcggatctctgaatccatgta 305 ||||||||||| |||||||| ||||| ||||| ||||||||||| Sbjct: 12381145 ggcatgtactgggccatgatcgcgcgaatctccgaatccatgta 12381102
>gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0098H14, complete sequence Length = 132560 Score = 56.0 bits (28), Expect = 7e-05 Identities = 40/44 (90%) Strand = Plus / Minus Query: 262 ggcatgtactgcgccatgatggcgcggatctctgaatccatgta 305 ||||||||||| |||||||| ||||| ||||| ||||||||||| Sbjct: 40163 ggcatgtactgggccatgatcgcgcgaatctccgaatccatgta 40120
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 56.0 bits (28), Expect = 7e-05 Identities = 40/44 (90%) Strand = Plus / Minus Query: 262 ggcatgtactgcgccatgatggcgcggatctctgaatccatgta 305 ||||||||||| |||||||| ||||| ||||| ||||||||||| Sbjct: 12377908 ggcatgtactgggccatgatcgcgcgaatctccgaatccatgta 12377865
>dbj|AK121413.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133A05, full insert sequence Length = 2546 Score = 56.0 bits (28), Expect = 7e-05 Identities = 40/44 (90%) Strand = Plus / Minus Query: 262 ggcatgtactgcgccatgatggcgcggatctctgaatccatgta 305 ||||||||||| |||||||| ||||| ||||| ||||||||||| Sbjct: 2122 ggcatgtactgggccatgatcgcgcgaatctccgaatccatgta 2079
>dbj|AK111509.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001G14, full insert sequence Length = 2546 Score = 56.0 bits (28), Expect = 7e-05 Identities = 40/44 (90%) Strand = Plus / Minus Query: 262 ggcatgtactgcgccatgatggcgcggatctctgaatccatgta 305 ||||||||||| |||||||| ||||| ||||| ||||||||||| Sbjct: 2122 ggcatgtactgggccatgatcgcgcgaatctccgaatccatgta 2079
>dbj|AK098891.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001M02, full insert sequence Length = 2508 Score = 56.0 bits (28), Expect = 7e-05 Identities = 40/44 (90%) Strand = Plus / Minus Query: 262 ggcatgtactgcgccatgatggcgcggatctctgaatccatgta 305 ||||||||||| |||||||| ||||| ||||| ||||||||||| Sbjct: 2085 ggcatgtactgggccatgatcgcgcgaatctccgaatccatgta 2042
>dbj|AK098846.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000C17, full insert sequence Length = 2527 Score = 56.0 bits (28), Expect = 7e-05 Identities = 40/44 (90%) Strand = Plus / Minus Query: 262 ggcatgtactgcgccatgatggcgcggatctctgaatccatgta 305 ||||||||||| |||||||| ||||| ||||| ||||||||||| Sbjct: 2074 ggcatgtactgggccatgatcgcgcgaatctccgaatccatgta 2031
>dbj|AP006374.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT47L09, TM0218, complete sequence Length = 113213 Score = 54.0 bits (27), Expect = 3e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 256 tccaggggcatgtactgcgccatgatggcgcggatctctgaatccat 302 |||| |||||||||||| ||||||||||| | ||| ||||||||||| Sbjct: 50885 tccaagggcatgtactgtgccatgatggctctgatttctgaatccat 50839
>ref|NM_179623.1| Arabidopsis thaliana VSR-2; calcium ion binding / peptidase AT2G14720 (VSR-2) transcript variant AT2G14720.2 mRNA, complete cds Length = 2325 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 256 tccaggggcatgtactgcgccatgatggcgcggatctctgaatccatgta 305 ||||| ||||||||||| ||||| ||||| | ||||||||| |||||||| Sbjct: 1962 tccagtggcatgtactgtgccattatggctctgatctctgagtccatgta 1913
>ref|NM_127036.3| Arabidopsis thaliana VSR-2; calcium ion binding / peptidase AT2G14720 (VSR-2) transcript variant AT2G14720.1 mRNA, complete cds Length = 2371 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 256 tccaggggcatgtactgcgccatgatggcgcggatctctgaatccatgta 305 ||||| ||||||||||| ||||| ||||| | ||||||||| |||||||| Sbjct: 2008 tccagtggcatgtactgtgccattatggctctgatctctgagtccatgta 1959
>gb|BT008390.1| Arabidopsis thaliana At2g14720 gene, complete cds Length = 1887 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 256 tccaggggcatgtactgcgccatgatggcgcggatctctgaatccatgta 305 ||||| ||||||||||| ||||| ||||| | ||||||||| |||||||| Sbjct: 1841 tccagtggcatgtactgtgccattatggctctgatctctgagtccatgta 1792
>gb|AC005398.3| Arabidopsis thaliana chromosome 2 clone T6B13 map mi398, complete sequence Length = 92524 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 256 tccaggggcatgtactgcgccatgatggcgcggatctctgaatccatgta 305 ||||| ||||||||||| ||||| ||||| | ||||||||| |||||||| Sbjct: 13956 tccagtggcatgtactgtgccattatggctctgatctctgagtccatgta 13907 Score = 48.1 bits (24), Expect = 0.018 Identities = 39/44 (88%) Strand = Plus / Plus Query: 262 ggcatgtactgcgccatgatggcgcggatctctgaatccatgta 305 ||||||||||| ||||| ||||| | ||||||||| |||||||| Sbjct: 2629 ggcatgtactgtgccattatggctctgatctctgagtccatgta 2672
>gb|AC004705.3| Arabidopsis thaliana chromosome 2 clone F26C24 map mi398, complete sequence Length = 89840 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 256 tccaggggcatgtactgcgccatgatggcgcggatctctgaatccatgta 305 ||||| ||||||||||| ||||| ||||| | ||||||||| |||||||| Sbjct: 87328 tccagtggcatgtactgtgccattatggctctgatctctgagtccatgta 87279 Score = 48.1 bits (24), Expect = 0.018 Identities = 39/44 (88%) Strand = Plus / Plus Query: 262 ggcatgtactgcgccatgatggcgcggatctctgaatccatgta 305 ||||||||||| ||||| ||||| | ||||||||| |||||||| Sbjct: 76001 ggcatgtactgtgccattatggctctgatctctgagtccatgta 76044
>gb|AY062744.1| Arabidopsis thaliana putative vacuolar sorting receptor (At2g14720; F26C24.14) mRNA, complete cds Length = 2281 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 256 tccaggggcatgtactgcgccatgatggcgcggatctctgaatccatgta 305 ||||| ||||||||||| ||||| ||||| | ||||||||| |||||||| Sbjct: 2008 tccagtggcatgtactgtgccattatggctctgatctctgagtccatgta 1959
>dbj|AK220910.1| Arabidopsis thaliana mRNA for putative vacuolar sorting receptor, complete cds, clone: RAFL22-47-H22 Length = 505 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 256 tccaggggcatgtactgcgccatgatggcgcggatctctgaatccatgta 305 ||||| ||||||||||| ||||| ||||| | ||||||||| |||||||| Sbjct: 199 tccagtggcatgtactgtgccattatggctctgatctctgagtccatgta 150
>gb|U79960.1|ATU79960 Arabidopsis thaliana vacuolar sorting receptor homolog mRNA, complete cds Length = 2290 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 256 tccaggggcatgtactgcgccatgatggcgcggatctctgaatccatgta 305 ||||| ||||||||||| ||||| ||||| | ||||||||| |||||||| Sbjct: 1979 tccagtggcatgtactgtgccattatggctctgatctctgagtccatgta 1930
>ref|NM_179624.1| Arabidopsis thaliana calcium ion binding / peptidase AT2G14740 transcript variant AT2G14740.2 mRNA, complete cds Length = 2080 Score = 48.1 bits (24), Expect = 0.018 Identities = 39/44 (88%) Strand = Plus / Minus Query: 262 ggcatgtactgcgccatgatggcgcggatctctgaatccatgta 305 ||||||||||| ||||| ||||| | ||||||||| |||||||| Sbjct: 1835 ggcatgtactgtgccattatggctctgatctctgagtccatgta 1792
>ref|NM_127038.1| Arabidopsis thaliana calcium ion binding / peptidase AT2G14740 transcript variant AT2G14740.1 mRNA, complete cds Length = 2173 Score = 48.1 bits (24), Expect = 0.018 Identities = 39/44 (88%) Strand = Plus / Minus Query: 262 ggcatgtactgcgccatgatggcgcggatctctgaatccatgta 305 ||||||||||| ||||| ||||| | ||||||||| |||||||| Sbjct: 1835 ggcatgtactgtgccattatggctctgatctctgagtccatgta 1792
>gb|AY017377.1| Physcomitrella patens EGF receptor-like protein (ELP) mRNA, partial cds Length = 1543 Score = 48.1 bits (24), Expect = 0.018 Identities = 39/44 (88%) Strand = Plus / Minus Query: 262 ggcatgtactgcgccatgatggcgcggatctctgaatccatgta 305 ||||||||||| ||||| || || || ||||||||||||||||| Sbjct: 1029 ggcatgtactgagccataatcgctcgaatctctgaatccatgta 986
>gb|DQ294283.1| Solanum tuberosum clone 131D12 vacuolar sorting receptor protein PV72-like protein mRNA, complete cds Length = 2269 Score = 48.1 bits (24), Expect = 0.018 Identities = 44/51 (86%) Strand = Plus / Minus Query: 274 gccatgatggcgcggatctctgaatccatgtacctncggatccgatacttg 324 ||||||||||| || |||||||| |||||||| || ||||| | ||||||| Sbjct: 1938 gccatgatggcacgaatctctgagtccatgtatctccggattctatacttg 1888
>ref|NM_195907.1| Oryza sativa (japonica cultivar-group) putative vacuolar sorting receptor protein (OSJNBb0078C13.14), mRNA Length = 1932 Score = 44.1 bits (22), Expect = 0.27 Identities = 43/50 (86%) Strand = Plus / Minus Query: 256 tccaggggcatgtactgcgccatgatggcgcggatctctgaatccatgta 305 ||||| ||||||||||| |||||||| || | |||||| || |||||||| Sbjct: 1883 tccagtggcatgtactgtgccatgattgctctgatctcagagtccatgta 1834
>gb|AC091666.4| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0078C13, complete sequence Length = 140553 Score = 44.1 bits (22), Expect = 0.27 Identities = 43/50 (86%) Strand = Plus / Minus Query: 256 tccaggggcatgtactgcgccatgatggcgcggatctctgaatccatgta 305 ||||| ||||||||||| |||||||| || | |||||| || |||||||| Sbjct: 137617 tccagtggcatgtactgtgccatgattgctctgatctcagagtccatgta 137568
>gb|AC079634.3|AC079634 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0045C13, from Chromosome 10, complete sequence Length = 161250 Score = 44.1 bits (22), Expect = 0.27 Identities = 43/50 (86%) Strand = Plus / Plus Query: 256 tccaggggcatgtactgcgccatgatggcgcggatctctgaatccatgta 305 ||||| ||||||||||| |||||||| || | |||||| || |||||||| Sbjct: 128817 tccagtggcatgtactgtgccatgattgctctgatctcagagtccatgta 128866
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 44.1 bits (22), Expect = 0.27 Identities = 43/50 (86%) Strand = Plus / Plus Query: 256 tccaggggcatgtactgcgccatgatggcgcggatctctgaatccatgta 305 ||||| ||||||||||| |||||||| || | |||||| || |||||||| Sbjct: 9896338 tccagtggcatgtactgtgccatgattgctctgatctcagagtccatgta 9896387
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 44.1 bits (22), Expect = 0.27 Identities = 43/50 (86%) Strand = Plus / Plus Query: 256 tccaggggcatgtactgcgccatgatggcgcggatctctgaatccatgta 305 ||||| ||||||||||| |||||||| || | |||||| || |||||||| Sbjct: 9902377 tccagtggcatgtactgtgccatgattgctctgatctcagagtccatgta 9902426
>gb|AC123624.13| Mus musculus chromosome 16, clone RP23-133E12, complete sequence Length = 214202 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 97 taatctagaaatttacagaacggt 120 |||||||||||||| ||||||||| Sbjct: 27434 taatctagaaattttcagaacggt 27411
>gb|AC117647.12| Mus musculus chromosome 16, clone RP23-244M7, complete sequence Length = 186115 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 97 taatctagaaatttacagaacggt 120 |||||||||||||| ||||||||| Sbjct: 45113 taatctagaaattttcagaacggt 45136
>gb|BT013566.1| Lycopersicon esculentum clone 132304F, mRNA sequence Length = 2395 Score = 40.1 bits (20), Expect = 4.3 Identities = 38/44 (86%) Strand = Plus / Minus Query: 262 ggcatgtactgcgccatgatggcgcggatctctgaatccatgta 305 ||||||||||||| ||||||||| |||||||| |||||||| Sbjct: 2007 ggcatgtactgcgacatgatggccataatctctgagtccatgta 1964
>gb|AC142230.3| Homo sapiens fosmid clone XXFOS-87252A6 from 7, complete sequence Length = 26013 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 gcacttttgggtgattaata 98 |||||||||||||||||||| Sbjct: 21562 gcacttttgggtgattaata 21581
>gb|AC182113.1| Pan troglodytes BAC clone CH251-533C21 from chromosome unknown, complete sequence Length = 221601 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 acttttgggtgattaataat 100 |||||||||||||||||||| Sbjct: 202529 acttttgggtgattaataat 202548
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 ctgcgccatgatggcgcgga 289 |||||||||||||||||||| Sbjct: 5191600 ctgcgccatgatggcgcgga 5191581 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,938,353 Number of Sequences: 3902068 Number of extensions: 1938353 Number of successful extensions: 29610 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 51 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 29452 Number of HSP's gapped (non-prelim): 159 length of query: 324 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 302 effective length of database: 17,147,199,772 effective search space: 5178454331144 effective search space used: 5178454331144 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
