ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags23i01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_466172.1| Oryza sativa (japonica cultivar-group), mRNA Length = 264 Score = 165 bits (83), Expect = 2e-37 Identities = 173/203 (85%) Strand = Plus / Minus Query: 335 gtagaacctggcgatgcgaccgcggttggggggcttaggcttgacgggcttcttccggcg 394 |||||||||||||| ||| ||||| | |||||| ||||||||||||||||||||||| Sbjct: 243 gtagaacctggcgaagcggccgcgctccttgggcttgggcttgacgggcttcttccggcg 184 Query: 395 cagcccggcgatctcctgaacgagcgggacgtgcaccagcaccgccctccacgccacata 454 ||||||||||||||||| || |||||||||||||||||||||| |||||||||||| || Sbjct: 183 gagcccggcgatctcctgcaccagcgggacgtgcaccagcaccgtcctccacgccacgta 124 Query: 455 ccagctcaggaggatgaatgataagacgaaggtgatggccaggacgggacggaggacgaa 514 |||||| ||| ||||| || | |||||||| || ||| |||| ||| ||||||||||| Sbjct: 123 ccagctgagggcgatgatggagaggacgaaggcgaaggcgaggaggggccggaggacgaa 64 Query: 515 aagttcggcgagctcccacgccg 537 | |||||| ||||||||||| Sbjct: 63 gacgacggcgatctcccacgccg 41
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 145 bits (73), Expect = 2e-31 Identities = 112/125 (89%) Strand = Plus / Plus Query: 335 gtagaacctggcgatgcgaccgcggttggggggcttaggcttgacgggcttcttccggcg 394 |||||||||||||| ||| ||||| | |||||| ||||||||||||||||||||||| Sbjct: 20854410 gtagaacctggcgaagcggccgcgctccttgggcttgggcttgacgggcttcttccggcg 20854469 Query: 395 cagcccggcgatctcctgaacgagcgggacgtgcaccagcaccgccctccacgccacata 454 ||||||||||||||||| || |||||||||||||||||||||| |||||||||||| || Sbjct: 20854470 gagcccggcgatctcctgcaccagcgggacgtgcaccagcaccgtcctccacgccacgta 20854529 Query: 455 ccagc 459 ||||| Sbjct: 20854530 ccagc 20854534
>dbj|AP004038.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1004_H01 Length = 121377 Score = 145 bits (73), Expect = 2e-31 Identities = 112/125 (89%) Strand = Plus / Plus Query: 335 gtagaacctggcgatgcgaccgcggttggggggcttaggcttgacgggcttcttccggcg 394 |||||||||||||| ||| ||||| | |||||| ||||||||||||||||||||||| Sbjct: 96871 gtagaacctggcgaagcggccgcgctccttgggcttgggcttgacgggcttcttccggcg 96930 Query: 395 cagcccggcgatctcctgaacgagcgggacgtgcaccagcaccgccctccacgccacata 454 ||||||||||||||||| || |||||||||||||||||||||| |||||||||||| || Sbjct: 96931 gagcccggcgatctcctgcaccagcgggacgtgcaccagcaccgtcctccacgccacgta 96990 Query: 455 ccagc 459 ||||| Sbjct: 96991 ccagc 96995
>gb|BT018938.1| Zea mays clone Contig82.F mRNA sequence Length = 568 Score = 131 bits (66), Expect = 3e-27 Identities = 153/182 (84%) Strand = Plus / Plus Query: 335 gtagaacctggcgatgcgaccgcggttggggggcttaggcttgacgggcttcttccggcg 394 ||||||| |||||| ||| |||||||||| ||||| || || |||||| ||| |||| Sbjct: 312 gtagaacttggcgaagcggccgcggttggctggcttgggtttagagggctttttcgggcg 371 Query: 395 cagcccggcgatctcctgaacgagcgggacgtgcaccagcaccgccctccacgccacata 454 ||| |||||||||||||| || ||||| |||||||||||||||| |||||||||||| || Sbjct: 372 caggccggcgatctcctgcaccagcggcacgtgcaccagcaccgtcctccacgccacgta 431 Query: 455 ccagctcaggaggatgaatgataagacgaaggtgatggccaggacgggacggaggacgaa 514 |||||| |||||||||| | |||||||||| |||||| ||||| || |||| || ||| Sbjct: 432 ccagctgaggaggatgagggtgaagacgaaggcgatggcaaggacagggcggatgaggaa 491 Query: 515 aa 516 || Sbjct: 492 aa 493
>gb|BT017674.1| Zea mays clone EL01N0442F06.c mRNA sequence Length = 691 Score = 113 bits (57), Expect = 6e-22 Identities = 117/137 (85%) Strand = Plus / Minus Query: 335 gtagaacctggcgatgcgaccgcggttggggggcttaggcttgacgggcttcttccggcg 394 ||||||| |||||| ||| |||||||||| ||||| || || |||||||||| |||| Sbjct: 288 gtagaacttggcgacgcggccgcggttggctggcttgggtttagagggcttcttcgggcg 229 Query: 395 cagcccggcgatctcctgaacgagcgggacgtgcaccagcaccgccctccacgccacata 454 ||| |||||||||||||| || ||||| |||||||||||||||| | |||||||||| || Sbjct: 228 caggccggcgatctcctgcaccagcggcacgtgcaccagcaccgtcgtccacgccacgta 169 Query: 455 ccagctcaggaggatga 471 ||||| |||||||||| Sbjct: 168 ccagccgaggaggatga 152
>gb|AY108677.1| Zea mays PCO101632 mRNA sequence Length = 734 Score = 113 bits (57), Expect = 6e-22 Identities = 117/137 (85%) Strand = Plus / Minus Query: 335 gtagaacctggcgatgcgaccgcggttggggggcttaggcttgacgggcttcttccggcg 394 ||||||| |||||| ||| |||||||||| ||||| || || |||||||||| |||| Sbjct: 370 gtagaacttggcgacgcggccgcggttggctggcttgggtttagagggcttcttcgggcg 311 Query: 395 cagcccggcgatctcctgaacgagcgggacgtgcaccagcaccgccctccacgccacata 454 ||| |||||||||||||| || ||||| |||||||||||||||| | |||||||||| || Sbjct: 310 caggccggcgatctcctgcaccagcggcacgtgcaccagcaccgtcgtccacgccacgta 251 Query: 455 ccagctcaggaggatga 471 ||||| |||||||||| Sbjct: 250 ccagccgaggaggatga 234
>gb|AC090483.3|AC090483 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0050M22, from chromosome 10, complete sequence Length = 145417 Score = 85.7 bits (43), Expect = 1e-13 Identities = 55/59 (93%) Strand = Plus / Minus Query: 365 gggcttaggcttgacgggcttcttccggcgcagcccggcgatctcctgaacgagcggga 423 |||||| ||||||||||||||||||||||| ||||||||||||||||| || ||||||| Sbjct: 3042 gggcttgggcttgacgggcttcttccggcgaagcccggcgatctcctgcaccagcggga 2984
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 85.7 bits (43), Expect = 1e-13 Identities = 55/59 (93%) Strand = Plus / Minus Query: 365 gggcttaggcttgacgggcttcttccggcgcagcccggcgatctcctgaacgagcggga 423 |||||| ||||||||||||||||||||||| ||||||||||||||||| || ||||||| Sbjct: 9369558 gggcttgggcttgacgggcttcttccggcgaagcccggcgatctcctgcaccagcggga 9369500
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 85.7 bits (43), Expect = 1e-13 Identities = 55/59 (93%) Strand = Plus / Minus Query: 365 gggcttaggcttgacgggcttcttccggcgcagcccggcgatctcctgaacgagcggga 423 |||||| ||||||||||||||||||||||| ||||||||||||||||| || ||||||| Sbjct: 9375597 gggcttgggcttgacgggcttcttccggcgaagcccggcgatctcctgcaccagcggga 9375539
>ref|NM_195846.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0050M22.2), mRNA Length = 471 Score = 75.8 bits (38), Expect = 1e-10 Identities = 44/46 (95%) Strand = Plus / Minus Query: 365 gggcttaggcttgacgggcttcttccggcgcagcccggcgatctcc 410 |||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct: 102 gggcttgggcttgacgggcttcttccggcgaagcccggcgatctcc 57
>gb|AF172282.1| Oryza sativa adh1-adh2 region Length = 339485 Score = 69.9 bits (35), Expect = 8e-09 Identities = 50/55 (90%) Strand = Plus / Plus Query: 396 agcccggcgatctcctgaacgagcgggacgtgcaccagcaccgccctccacgcca 450 ||||||||||||||||| || | || ||||||||||||||||| ||||||||||| Sbjct: 232262 agcccggcgatctcctgcaccaacgagacgtgcaccagcaccgtcctccacgcca 232316
>gb|AC123523.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0051P13, complete sequence Length = 142241 Score = 69.9 bits (35), Expect = 8e-09 Identities = 50/55 (90%) Strand = Plus / Minus Query: 396 agcccggcgatctcctgaacgagcgggacgtgcaccagcaccgccctccacgcca 450 ||||||||||||||||| || | || ||||||||||||||||| ||||||||||| Sbjct: 104055 agcccggcgatctcctgcaccaacgagacgtgcaccagcaccgtcctccacgcca 104001
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 69.9 bits (35), Expect = 8e-09 Identities = 50/55 (90%) Strand = Plus / Minus Query: 396 agcccggcgatctcctgaacgagcgggacgtgcaccagcaccgccctccacgcca 450 ||||||||||||||||| || | || ||||||||||||||||| ||||||||||| Sbjct: 661554 agcccggcgatctcctgcaccaacgagacgtgcaccagcaccgtcctccacgcca 661500
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 69.9 bits (35), Expect = 8e-09 Identities = 50/55 (90%) Strand = Plus / Minus Query: 396 agcccggcgatctcctgaacgagcgggacgtgcaccagcaccgccctccacgcca 450 ||||||||||||||||| || | || ||||||||||||||||| ||||||||||| Sbjct: 5443514 agcccggcgatctcctgcaccaacgagacgtgcaccagcaccgtcctccacgcca 5443460
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 69.9 bits (35), Expect = 8e-09 Identities = 50/55 (90%) Strand = Plus / Minus Query: 396 agcccggcgatctcctgaacgagcgggacgtgcaccagcaccgccctccacgcca 450 ||||||||||||||||| || | || ||||||||||||||||| ||||||||||| Sbjct: 21935188 agcccggcgatctcctgcaccaacgagacgtgcaccagcaccgtcctccacgcca 21935134
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 69.9 bits (35), Expect = 8e-09 Identities = 50/55 (90%) Strand = Plus / Plus Query: 396 agcccggcgatctcctgaacgagcgggacgtgcaccagcaccgccctccacgcca 450 ||||||||||||||||| || | || ||||||||||||||||| ||||||||||| Sbjct: 4888388 agcccggcgatctcctgcaccaacgagacgtgcaccagcaccgtcctccacgcca 4888442
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 69.9 bits (35), Expect = 8e-09 Identities = 50/55 (90%) Strand = Plus / Minus Query: 396 agcccggcgatctcctgaacgagcgggacgtgcaccagcaccgccctccacgcca 450 ||||||||||||||||| || | || ||||||||||||||||| ||||||||||| Sbjct: 661552 agcccggcgatctcctgcaccaacgagacgtgcaccagcaccgtcctccacgcca 661498
>gb|AC121490.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0005F16, complete sequence Length = 160053 Score = 69.9 bits (35), Expect = 8e-09 Identities = 50/55 (90%) Strand = Plus / Minus Query: 396 agcccggcgatctcctgaacgagcgggacgtgcaccagcaccgccctccacgcca 450 ||||||||||||||||| || | || ||||||||||||||||| ||||||||||| Sbjct: 47435 agcccggcgatctcctgcaccaacgagacgtgcaccagcaccgtcctccacgcca 47381
>dbj|AP004729.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0006A22 Length = 190690 Score = 69.9 bits (35), Expect = 8e-09 Identities = 50/55 (90%) Strand = Plus / Minus Query: 396 agcccggcgatctcctgaacgagcgggacgtgcaccagcaccgccctccacgcca 450 ||||||||||||||||| || | || ||||||||||||||||| ||||||||||| Sbjct: 157673 agcccggcgatctcctgcaccaacgagacgtgcaccagcaccgtcctccacgcca 157619
>dbj|AK119333.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-131-B12, full insert sequence Length = 2846 Score = 69.9 bits (35), Expect = 8e-09 Identities = 50/55 (90%) Strand = Plus / Minus Query: 396 agcccggcgatctcctgaacgagcgggacgtgcaccagcaccgccctccacgcca 450 ||||||||||||||||| || | || ||||||||||||||||| ||||||||||| Sbjct: 2252 agcccggcgatctcctgcaccaacgagacgtgcaccagcaccgtcctccacgcca 2198
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 69.9 bits (35), Expect = 8e-09 Identities = 50/55 (90%) Strand = Plus / Minus Query: 396 agcccggcgatctcctgaacgagcgggacgtgcaccagcaccgccctccacgcca 450 ||||||||||||||||| || | || ||||||||||||||||| ||||||||||| Sbjct: 5509991 agcccggcgatctcctgcaccaacgagacgtgcaccagcaccgtcctccacgcca 5509937
>gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0453H11, complete sequence Length = 187956 Score = 69.9 bits (35), Expect = 8e-09 Identities = 50/55 (90%) Strand = Plus / Plus Query: 396 agcccggcgatctcctgaacgagcgggacgtgcaccagcaccgccctccacgcca 450 ||||||||||||||||| || | || ||||||||||||||||| ||||||||||| Sbjct: 160796 agcccggcgatctcctgcaccaacgagacgtgcaccagcaccgtcctccacgcca 160850
>gb|AC147124.2| Mus musculus BAC clone RP24-163K4 from chromosome 7, complete sequence Length = 165569 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 77 gtacatgtgtatgtacaatcttt 99 ||||||||||||||||||||||| Sbjct: 21462 gtacatgtgtatgtacaatcttt 21440
>gb|AC125226.3| Mus musculus BAC clone RP23-39D21 from 7, complete sequence Length = 133624 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 77 gtacatgtgtatgtacaatcttt 99 ||||||||||||||||||||||| Sbjct: 126315 gtacatgtgtatgtacaatcttt 126293
>gb|AC107377.4| Homo sapiens chromosome 17, clone CTD-2314M10, complete sequence Length = 88848 Score = 44.1 bits (22), Expect = 0.47 Identities = 25/26 (96%) Strand = Plus / Minus Query: 97 tttatcacaagatccttaactttaca 122 |||||| ||||||||||||||||||| Sbjct: 76312 tttatctcaagatccttaactttaca 76287
>gb|AC104868.8| Mus musculus chromosome 1, clone RP24-532K6, complete sequence Length = 182376 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 28 tacatgtgtatgtacaatgta 48 ||||||||||||||||||||| Sbjct: 159174 tacatgtgtatgtacaatgta 159194
>emb|AL512404.15| Human DNA sequence from clone RP11-328C7 on chromosome 6, complete sequence Length = 40204 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 27 gtacatgtgtatgtacaatgt 47 ||||||||||||||||||||| Sbjct: 103 gtacatgtgtatgtacaatgt 123
>gb|AC000030.5| Homo sapiens Chromosome 12 Cosmid Clone c200f3, complete sequence Length = 35014 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 27 gtacatgtgtatgtacaatgt 47 ||||||||||||||||||||| Sbjct: 9136 gtacatgtgtatgtacaatgt 9116
>dbj|AB009056.2| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MZF18 Length = 65958 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 506 gaggacgaaaagttcggcgag 526 ||||||||||||||||||||| Sbjct: 48340 gaggacgaaaagttcggcgag 48360
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 381 ggcttcttccggcgcagcccggcg 404 ||||||||||||||||||| |||| Sbjct: 1410742 ggcttcttccggcgcagcctggcg 1410765
>gb|CP000081.1| Leishmania major chromosome 35, complete sequence Length = 2090491 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 ccagcaccgccctccacgcc 449 |||||||||||||||||||| Sbjct: 2027161 ccagcaccgccctccacgcc 2027180
>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome Length = 2560265 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 510 acgaaaagttcggcgagctc 529 |||||||||||||||||||| Sbjct: 1772064 acgaaaagttcggcgagctc 1772083
>emb|AL513282.10| Human DNA sequence from clone RP11-179G5 on chromosome 1 Contains a laminin receptor 1 (ribosomal protein SA, 67 kDa) (LAMR1) pseudogene the PXF gene for peroxisomal farnesylated protein and the 3' end of the COPA gene for coatomer protein complex subunit alpha, complete sequence Length = 76737 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 448 ccacataccagctcaggagg 467 |||||||||||||||||||| Sbjct: 30221 ccacataccagctcaggagg 30240
>gb|DQ027826.1| Drosophila melanogaster suppressor-of-rudimentary dihydropyrimidine dehydrogenase mutant (su(r)) gene, su(r)-1 allele, complete cds Length = 4509 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 290 tcccaaagaggtcccttctgactt 313 |||||||||| ||||||||||||| Sbjct: 3353 tcccaaagagctcccttctgactt 3330
>gb|AC023729.5| Drosophila melanogaster X BAC RP98-39L4 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 182635 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 290 tcccaaagaggtcccttctgactt 313 |||||||||| ||||||||||||| Sbjct: 159452 tcccaaagagctcccttctgactt 159475
>gb|AC105350.2| Drosophila melanogaster X BAC RP98-30C13 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 184334 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 290 tcccaaagaggtcccttctgactt 313 |||||||||| ||||||||||||| Sbjct: 175328 tcccaaagagctcccttctgactt 175305
>gb|AC109359.4| Homo sapiens BAC clone RP11-679M12 from 4, complete sequence Length = 134897 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 295 aagaggtcccttctgacttg 314 |||||||||||||||||||| Sbjct: 57200 aagaggtcccttctgacttg 57219
>gb|AC104459.2| Homo sapiens chromosome 1 clone RP5-838N20, complete sequence Length = 127436 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 cttctgacttgttcctctgg 323 |||||||||||||||||||| Sbjct: 100239 cttctgacttgttcctctgg 100258
>ref|NM_167182.1| Drosophila melanogaster Rhythmically expressed gene 3 CG2194-RC, transcript variant C (Reg-3), mRNA Length = 3397 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 290 tcccaaagaggtcccttctgactt 313 |||||||||| ||||||||||||| Sbjct: 2915 tcccaaagagctcccttctgactt 2892
>ref|NM_132310.2| Drosophila melanogaster Rhythmically expressed gene 3 CG2194-RB, transcript variant B (Reg-3), mRNA Length = 3374 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 290 tcccaaagaggtcccttctgactt 313 |||||||||| ||||||||||||| Sbjct: 2892 tcccaaagagctcccttctgactt 2869
>gb|AY058259.1| Drosophila melanogaster GH01650 full length cDNA Length = 2729 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 290 tcccaaagaggtcccttctgactt 313 |||||||||| ||||||||||||| Sbjct: 2231 tcccaaagagctcccttctgactt 2208
>emb|BX296548.20| Pig DNA sequence from clone PigE-193I9, complete sequence Length = 172252 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 95 tctttatcacaagatccttaactt 118 |||||||| ||||||||||||||| Sbjct: 28369 tctttatctcaagatccttaactt 28392
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 392 gcgcagcccggcgatctcct 411 |||||||||||||||||||| Sbjct: 3503085 gcgcagcccggcgatctcct 3503066
>emb|AJ292764.1|RLE292764 Rhizobium leguminosarum plasmid pRlVF39b ORF1 Length = 2647 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 390 cggcgcagcccggcgatctc 409 |||||||||||||||||||| Sbjct: 95 cggcgcagcccggcgatctc 114
>gb|AE003446.4| Drosophila melanogaster chromosome X, section 30 of 74 of the complete sequence Length = 290970 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 290 tcccaaagaggtcccttctgactt 313 |||||||||| ||||||||||||| Sbjct: 148393 tcccaaagagctcccttctgactt 148416
>emb|AL929332.15| Mouse DNA sequence from clone RP23-476I19 on chromosome 2, complete sequence Length = 112785 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 ttctttcaaagtcccaaaga 298 |||||||||||||||||||| Sbjct: 83665 ttctttcaaagtcccaaaga 83646
>gb|AC174721.1| Gasterosteus aculeatus clone VMRC28-84C14, complete sequence Length = 125967 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 380 gggcttcttccggcgcagcc 399 |||||||||||||||||||| Sbjct: 85291 gggcttcttccggcgcagcc 85272
>emb|AL954325.8| Mouse DNA sequence from clone RP23-416H10 on chromosome 2, complete sequence Length = 195457 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 tacatgtgtatgtacaatgt 47 |||||||||||||||||||| Sbjct: 188629 tacatgtgtatgtacaatgt 188610
>gb|AF545061.1| Drosophila melanogaster dihydropyrimidine dehydrogenase (Pyd1) mRNA, complete cds Length = 3096 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 290 tcccaaagaggtcccttctgactt 313 |||||||||| ||||||||||||| Sbjct: 2699 tcccaaagagctcccttctgactt 2676 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,151,450 Number of Sequences: 3902068 Number of extensions: 4151450 Number of successful extensions: 80115 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 79767 Number of HSP's gapped (non-prelim): 345 length of query: 543 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 520 effective length of database: 17,143,297,704 effective search space: 8914514806080 effective search space used: 8914514806080 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
