Clone Information

BLAST Search Result

Clone Name	rbags23h19
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	92	3e-15
2	dbj\|AP004775.3\| Oryza sativa (japonica cultivar-group) genomic D...	92	3e-15
3	ref\|XM_466155.1\| Oryza sativa (japonica cultivar-group), mRNA	44	0.53
4	gb\|AC104296.4\| Mus Musculus Strain 129S6/SvEvTac chromosome 2 BA...	44	0.53
5	dbj\|AK071257.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	44	0.53
6	emb\|AL844481.5\| Mouse DNA sequence from clone RP23-44H23 on chro...	44	0.53
7	gb\|AC161194.14\| Mus musculus chromosome 15, clone RP23-345C13, c...	42	2.1
8	gb\|DQ365808.1\| Rickettsia raoultii strain Khabarovsk sca-family ...	42	2.1
9	gb\|DQ365807.1\| Rickettsia raoultii strain Marne sca-family prote...	42	2.1
10	gb\|AC103681.4\| Homo sapiens chromosome 11, clone CTD-2560E9, com...	42	2.1
11	gb\|AC103682.4\| Homo sapiens chromosome 11, clone CTD-2604L9, com...	42	2.1
12	gb\|CP000033.1\| Lactobacillus acidophilus NCFM, complete genome	42	2.1
13	gb\|AC147891.2\| Xenopus tropicalis clone CH216-2E23, complete seq...	42	2.1
14	ref\|NM_122704.1\| Arabidopsis thaliana mRNA guanylyltransferase/ ...	40	8.3
15	gb\|AE017341.1\| Cryptococcus neoformans var. neoformans JEC21 chr...	40	8.3
16	gb\|AC151801.1\| Solanum demissum chromosome 11 clone PGEC591C22 m...	40	8.3
17	gb\|BC068753.1\| Xenopus laevis hypothetical protein MGC81250, mRN...	40	8.3
18	gb\|AC026471.6\| Homo sapiens chromosome 16 clone RP11-452L6, comp...	40	8.3
19	ref\|XM_567023.1\| Cryptococcus neoformans var. neoformans JEC21 i...	40	8.3
20	gb\|AC125182.3\| Mus musculus BAC clone RP23-293D23 from 15, compl...	40	8.3
21	gb\|AC007276.3\| Homo sapiens BAC clone RP11-226O1 from 7, complet...	40	8.3
22	gb\|AC152348.7\| Medicago truncatula clone mth2-52e17, complete se...	40	8.3
23	emb\|AL953889.9\| Human DNA sequence from clone RP11-7G23 on chrom...	40	8.3
24	emb\|BX005037.5\| Human DNA sequence from clone RP11-34H11 on chro...	40	8.3
25	emb\|AL954360.3\| Human DNA sequence from clone RP11-98I6 on chrom...	40	8.3
26	emb\|AL627230.15\| Human DNA sequence from clone RP11-12A20 on chr...	40	8.3
27	emb\|AL591926.8\| Human DNA sequence from clone RP11-157L3 on chro...	40	8.3
28	emb\|AL589794.7\| Human DNA sequence from clone RP11-564C4 on chro...	40	8.3
29	emb\|AL450382.7\| Human DNA sequence from clone RP11-56A21 on chro...	40	8.3
30	emb\|AL390061.9\| Human DNA sequence from clone RP11-322I2 on chro...	40	8.3
31	emb\|AL356755.12\| Human DNA sequence from clone RP5-964F7 on chro...	40	8.3
32	emb\|AL162731.33\| Human DNA sequence from clone RP11-292F9 on chr...	40	8.3
33	emb\|AL162573.15\| Human DNA sequence from clone RP11-275J18 on ch...	40	8.3
34	emb\|AL353146.9\| Human DNA sequence from clone RP11-168O10 on chr...	40	8.3
35	gb\|AC183592.2\| Pan troglodytes BAC clone CH251-733I16 from chrom...	40	8.3
36	emb\|AL139084.9\| Human DNA sequence from clone RP11-318G11 on chr...	40	8.3
37	emb\|AL096707.13\|HSJ729N16 Human DNA sequence from clone RP4-729N...	40	8.3
38	emb\|AL607083.17\| Mouse DNA sequence from clone RP23-206E3 on chr...	40	8.3
39	emb\|AL773537.4\| Human DNA sequence from clone RP11-268E1 on chro...	40	8.3
40	gb\|AC107032.4\| Homo sapiens 12 BAC RP11-613M5 (Roswell Park Canc...	40	8.3
41	gb\|AC160836.12\| Medicago truncatula clone mth2-115l23, complete ...	40	8.3
42	gb\|AC008706.5\| Homo sapiens chromosome 5 clone CTB-77M23, comple...	40	8.3
43	gb\|AC090971.3\| Homo sapiens chromosome 15 clone RP11-56B16 map 1...	40	8.3
44	gb\|AC026440.4\|AC026440 Homo sapiens chromosome 5 clone CTD-2269F...	40	8.3
45	gb\|AC023344.4\|AC023344 Homo sapiens BAC clone RP11-395G23 from 8...	40	8.3
46	gb\|AC131009.7\| Homo sapiens 12 BAC RP11-417L19 (Roswell Park Can...	40	8.3
47	gb\|AF177535.1\|F26C17 Arabidopsis thaliana BAC F26C17	40	8.3
48	emb\|AL162831.6\|CNS01RI2 Human chromosome 14 DNA sequence BAC R-1...	40	8.3
49	emb\|AL161757.4\|CNS01RHK Human chromosome 14 DNA sequence BAC R-1...	40	8.3
50	gb\|AF086443.1\|HUMZD81C11 Homo sapiens full length insert cDNA cl...	40	8.3
51	emb\|AL137918.4\|CNS01DWQ Human chromosome 14 DNA sequence BAC R-4...	40	8.3
52	dbj\|AP002898.1\| Homo sapiens genomic DNA, chromosome 20p, clone:...	40	8.3
53	dbj\|AP005404.2\| Homo sapiens genomic DNA, chromosome 18 clone:RP...	40	8.3

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 55/58 (94%)
 Strand = Plus / Plus

                                                                          
Query: 383      caggcaactgagagattctgagggagcttaatgaaactcctttggagtatggatccct 440
                ||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 20748826 caggcaattgagaaattctgagggagcttaatgaaactcctttagagtatggatccct 20748883



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 438      cctttgtttatctgctgaccatc 460
                |||||||||||||||||||||||
Sbjct: 20749066 cctttgtttatctgctgaccatc 20749088



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 560      acgctttactttctgcaatgcctt 583
                ||||||||||||||||| ||||||
Sbjct: 20749188 acgctttactttctgcagtgcctt 20749211

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>dbj|AP004775.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0451A10
          Length = 137046

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 55/58 (94%)
 Strand = Plus / Plus

                                                                       
Query: 383   caggcaactgagagattctgagggagcttaatgaaactcctttggagtatggatccct 440
             ||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 99932 caggcaattgagaaattctgagggagcttaatgaaactcctttagagtatggatccct 99989



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 438    cctttgtttatctgctgaccatc 460
              |||||||||||||||||||||||
Sbjct: 100172 cctttgtttatctgctgaccatc 100194



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 560    acgctttactttctgcaatgcctt 583
              ||||||||||||||||| ||||||
Sbjct: 100294 acgctttactttctgcagtgcctt 100317

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>ref|XM_466155.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1654

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 439  ctttgtttatctgctgaccatc 460
            ||||||||||||||||||||||
Sbjct: 1066 ctttgtttatctgctgaccatc 1045



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 560 acgctttactttctgcaatgcctt 583
           ||||||||||||||||| ||||||
Sbjct: 945 acgctttactttctgcagtgcctt 922

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>gb|AC104296.4| Mus Musculus Strain 129S6/SvEvTac chromosome 2 BAC, RP22-161J17,
             complete sequence
          Length = 161984

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 467   tgccttcgaggcttggttttcc 488
             ||||||||||||||||||||||
Sbjct: 80986 tgccttcgaggcttggttttcc 80965

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>dbj|AK071257.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083L07, full
            insert sequence
          Length = 1654

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 439  ctttgtttatctgctgaccatc 460
            ||||||||||||||||||||||
Sbjct: 1066 ctttgtttatctgctgaccatc 1045



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 560 acgctttactttctgcaatgcctt 583
           ||||||||||||||||| ||||||
Sbjct: 945 acgctttactttctgcagtgcctt 922

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>emb|AL844481.5| Mouse DNA sequence from clone RP23-44H23 on chromosome 2, complete
             sequence
          Length = 109532

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 467   tgccttcgaggcttggttttcc 488
             ||||||||||||||||||||||
Sbjct: 64769 tgccttcgaggcttggttttcc 64748

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>gb|AC161194.14| Mus musculus chromosome 15, clone RP23-345C13, complete sequence
          Length = 193998

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 191    catgttgtttcttcttccttc 211
              |||||||||||||||||||||
Sbjct: 152903 catgttgtttcttcttccttc 152923

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>gb|DQ365808.1| Rickettsia raoultii strain Khabarovsk sca-family protein (sca4) gene,
            partial cds
          Length = 3020

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 565  ttactttctgcaatgcctttt 585
            |||||||||||||||||||||
Sbjct: 2148 ttactttctgcaatgcctttt 2128

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>gb|DQ365807.1| Rickettsia raoultii strain Marne sca-family protein (sca4)
            pseudogene, partial sequence
          Length = 3021

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 565  ttactttctgcaatgcctttt 585
            |||||||||||||||||||||
Sbjct: 2149 ttactttctgcaatgcctttt 2129

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>gb|AC103681.4| Homo sapiens chromosome 11, clone CTD-2560E9, complete sequence
          Length = 215485

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 249    tgatctgctttccttgacctc 269
              |||||||||||||||||||||
Sbjct: 209995 tgatctgctttccttgacctc 210015

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>gb|AC103682.4| Homo sapiens chromosome 11, clone CTD-2604L9, complete sequence
          Length = 57561

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 249   tgatctgctttccttgacctc 269
             |||||||||||||||||||||
Sbjct: 35232 tgatctgctttccttgacctc 35212

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>gb|CP000033.1| Lactobacillus acidophilus NCFM, complete genome
          Length = 1993564

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 575    caatgccttttcagtagtgta 595
              |||||||||||||||||||||
Sbjct: 773644 caatgccttttcagtagtgta 773624

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>gb|AC147891.2| Xenopus tropicalis clone CH216-2E23, complete sequence
          Length = 209003

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 570    ttctgcaatgccttttcagta 590
              |||||||||||||||||||||
Sbjct: 121968 ttctgcaatgccttttcagta 121988

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>ref|NM_122704.1| Arabidopsis thaliana mRNA guanylyltransferase/ phosphoprotein
            phosphatase AT5G28210 mRNA, complete cds
          Length = 1878

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 128  taattgtgtctacaaccatc 147
            ||||||||||||||||||||
Sbjct: 1129 taattgtgtctacaaccatc 1110

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>gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete
               sequence
          Length = 2300533

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 134     tgtctacaaccatcatgcaa 153
               ||||||||||||||||||||
Sbjct: 1915326 tgtctacaaccatcatgcaa 1915345

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>gb|AC151801.1| Solanum demissum chromosome 11 clone PGEC591C22 map MAP_LOC, complete
             sequence
          Length = 147506

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 451   gctgaccatcattgggtgcc 470
             ||||||||||||||||||||
Sbjct: 83145 gctgaccatcattgggtgcc 83126



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 451   gctgaccatcattgggtgcc 470
             ||||||||||||||||||||
Sbjct: 47893 gctgaccatcattgggtgcc 47874

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>gb|BC068753.1| Xenopus laevis hypothetical protein MGC81250, mRNA (cDNA clone
            MGC:81250 IMAGE:6631157), complete cds
          Length = 1785

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 374  ctggtggatcaggcaactga 393
            ||||||||||||||||||||
Sbjct: 1367 ctggtggatcaggcaactga 1386

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>gb|AC026471.6| Homo sapiens chromosome 16 clone RP11-452L6, complete sequence
          Length = 186860

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 246    aggtgatctgctttccttgacctc 269
              ||||||||||||| ||||||||||
Sbjct: 119405 aggtgatctgcttgccttgacctc 119382

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>ref|XM_567023.1| Cryptococcus neoformans var. neoformans JEC21 iron ion
            homeostasis-related protein (CNA07060) partial mRNA
          Length = 1772

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 134  tgtctacaaccatcatgcaa 153
            ||||||||||||||||||||
Sbjct: 1720 tgtctacaaccatcatgcaa 1701

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>gb|AC125182.3| Mus musculus BAC clone RP23-293D23 from 15, complete sequence
          Length = 169841

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 566   tactttctgcaatgcctttt 585
             ||||||||||||||||||||
Sbjct: 97002 tactttctgcaatgcctttt 96983

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>gb|AC007276.3| Homo sapiens BAC clone RP11-226O1 from 7, complete sequence
          Length = 172573

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 195    ttgtttcttcttccttctgt 214
              ||||||||||||||||||||
Sbjct: 135731 ttgtttcttcttccttctgt 135712

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>gb|AC152348.7| Medicago truncatula clone mth2-52e17, complete sequence
          Length = 122070

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 195   ttgtttcttcttccttctgt 214
             ||||||||||||||||||||
Sbjct: 45306 ttgtttcttcttccttctgt 45325

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>emb|AL953889.9| Human DNA sequence from clone RP11-7G23 on chromosome 9 Contains six
              novel pseudogenes, the FAM27A gene for  family with
              sequence similarity 27, member A, a novel gene and five CpG
              islands, complete sequence
          Length = 160730

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 246    aggtgatctgctttccttgacctc 269
              |||||||||||| |||||||||||
Sbjct: 139741 aggtgatctgctctccttgacctc 139764

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>emb|BX005037.5| Human DNA sequence from clone RP11-34H11 on chromosome 9 Contains two
             CpG islands, complete sequence
          Length = 173181

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 246   aggtgatctgctttccttgacctc 269
             |||||||||||| |||||||||||
Sbjct: 12618 aggtgatctgctctccttgacctc 12595

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>emb|AL954360.3| Human DNA sequence from clone RP11-98I6 on chromosome 10 Contains a
             novel protein similar to KIAA0592, solute carrier family 9
             member 3 (SLC9A3) pseudogene and novel protein similar to
             N-acylsphingosine amidohydrolase (non-lysosomal
             ceramidase) 2 (ASAH2), complete sequence
          Length = 163231

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 565   ttactttctgcaatgccttt 584
             ||||||||||||||||||||
Sbjct: 96138 ttactttctgcaatgccttt 96157

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>emb|AL627230.15| Human DNA sequence from clone RP11-12A20 on chromosome 9 Contains six
              novel pseudogenes, the FAM27B gene for family with sequence
              similarity 27, member B, a pseudogene similar to part of
              ribosomal protein L10 (RPL10) and four CpG islands,
              complete sequence
          Length = 194246

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 246    aggtgatctgctttccttgacctc 269
              |||||||||||| |||||||||||
Sbjct: 149190 aggtgatctgctctccttgacctc 149213

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>emb|AL591926.8| Human DNA sequence from clone RP11-157L3 on chromosome 9 Contains five
              novel pseudogenes, a pseudogene similar to part of
              ribosomal protein L10 (RPL10) and two CpG islands, complete
              sequence
          Length = 182366

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 246    aggtgatctgctttccttgacctc 269
              |||||||||||| |||||||||||
Sbjct: 154475 aggtgatctgctctccttgacctc 154498

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>emb|AL589794.7| Human DNA sequence from clone RP11-564C4 on chromosome 10 Contains the 3'
              end of the gene for apobec-1 complementation factor (ACF)
              (ASP), the gene for a novel protein similar to
              N-acylsphingosine amidohydrolase (non-lysosomal ceramidase)
              2 (ASAH2), the cathepsin L-like 2 (CTSLL2) pseudogene,
              three novel pseudogenes (KIAA1553), a novel gene, a protein
              geranylgeranyltransferase type I beta subunit (PGGT1B)
              pseudogene and a CpG island, complete sequence
          Length = 178899

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 565    ttactttctgcaatgccttt 584
              ||||||||||||||||||||
Sbjct: 127853 ttactttctgcaatgccttt 127834

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>emb|AL450382.7| Human DNA sequence from clone RP11-56A21 on chromosome 10 Contains part
             of gene FLJ10824, a solute carrier family 9
             (sodium/hydrogen exchanger) isoform 5 (SLC9A5) pseudogene,
             the ASAH2 gene for N-acylsphingosine amidohydrolase
             (non-lysosomal ceramidase) 2 and a dynein cytoplasmic
             intermediate polypeptide 2 (DNCI2) pseudogene, complete
             sequence
          Length = 162228

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 565   ttactttctgcaatgccttt 584
             ||||||||||||||||||||
Sbjct: 49422 ttactttctgcaatgccttt 49441

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>emb|AL390061.9| Human DNA sequence from clone RP11-322I2 on chromosome 10 Contains a
             novel gene and a pseudogene similar to MAP
             kinase-interacting serine/threonine kinase 1 (MKNK1),
             complete sequence
          Length = 174818

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 246   aggtgatctgctttccttgacctc 269
             ||||||||||||||||| ||||||
Sbjct: 72872 aggtgatctgctttcctcgacctc 72849

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>emb|AL356755.12| Human DNA sequence from clone RP5-964F7 on chromosome 20 Contains
           the GFRA4 gene for GDNF family receptor alpha 4, the 3'
           end of the ADAM33 gene for a disintegrin and
           metalloproteinase domain 33 protein and two CpG islands,
           complete sequence
          Length = 23379

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 110 agaataagaaaagctaacta 129
           ||||||||||||||||||||
Sbjct: 201 agaataagaaaagctaacta 182

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>emb|AL162731.33| Human DNA sequence from clone RP11-292F9 on chromosome 9 Contains four
              novel genes, three novel pseudogenes and two CpG islands,
              complete sequence
          Length = 188062

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 246    aggtgatctgctttccttgacctc 269
              |||||||||||| |||||||||||
Sbjct: 181992 aggtgatctgctctccttgacctc 182015

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>emb|AL162573.15| Human DNA sequence from clone RP11-275J18 on chromosome 13, complete
             sequence
          Length = 166509

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 246   aggtgatctgctttccttgacctc 269
             ||||||||||||| ||||||||||
Sbjct: 91520 aggtgatctgcttgccttgacctc 91543

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>emb|AL353146.9| Human DNA sequence from clone RP11-168O10 on chromosome 10 Contains the
             IFIT1 gene for interferon-induced protein with
             tetratricopeptide repeats 1, the 5' end of a variant of
             the LIPA gene for lipase A lysosomal acid cholesterol
             esterase (Wolman disease), the gene for retinoic acid- and
             interferon-inducible protein (58kD) (RI58), a novel gene,
             the gene for a novel protein similar to monocarboxylate,
             the 3' end of a novel gene and a CpG island, complete
             sequence
          Length = 126887

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 227   cggcatctattagactctta 246
             ||||||||||||||||||||
Sbjct: 93642 cggcatctattagactctta 93623

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>gb|AC183592.2| Pan troglodytes BAC clone CH251-733I16 from chromosome 10, complete
             sequence
          Length = 167069

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 565   ttactttctgcaatgccttt 584
             ||||||||||||||||||||
Sbjct: 72084 ttactttctgcaatgccttt 72065

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>emb|AL139084.9| Human DNA sequence from clone RP11-318G11 on chromosome 13 Contains
             part of the gene for zizimin1 (KIAA1085) and a ribosomal
             protein L7 (RPL7) pseudogene, complete sequence
          Length = 80803

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 246   aggtgatctgctttccttgacctc 269
             ||||||||||||| ||||||||||
Sbjct: 68245 aggtgatctgcttgccttgacctc 68268

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>emb|AL096707.13|HSJ729N16 Human DNA sequence from clone RP4-729N16 on chromosome 10, complete
              sequence
          Length = 154469

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 389    actgagagattctgagggag 408
              ||||||||||||||||||||
Sbjct: 126681 actgagagattctgagggag 126662

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>emb|AL607083.17| Mouse DNA sequence from clone RP23-206E3 on chromosome 11 Contains a
             novel gene, complete sequence
          Length = 189495

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 195   ttgtttcttcttccttctgt 214
             ||||||||||||||||||||
Sbjct: 87098 ttgtttcttcttccttctgt 87117

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>emb|AL773537.4| Human DNA sequence from clone RP11-268E1 on chromosome 9 Contains three
             novel pseudogene, a novel gene, a pseudogene similar to
             part ofribosomal protein L10 (QM, NOV, DXS648, DXS648E,
             FLJ23544) (RPL10) and a CpG island, complete sequence
          Length = 166231

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 246   aggtgatctgctttccttgacctc 269
             |||||||||||| |||||||||||
Sbjct: 57326 aggtgatctgctctccttgacctc 57349

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>gb|AC107032.4| Homo sapiens 12 BAC RP11-613M5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 162515

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 423   tttggagtatggatcccttt 442
             ||||||||||||||||||||
Sbjct: 54463 tttggagtatggatcccttt 54444

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>gb|AC160836.12| Medicago truncatula clone mth2-115l23, complete sequence
          Length = 116158

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 195  ttgtttcttcttccttctgt 214
            ||||||||||||||||||||
Sbjct: 3747 ttgtttcttcttccttctgt 3728

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>gb|AC008706.5| Homo sapiens chromosome 5 clone CTB-77M23, complete sequence
          Length = 164394

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 246   aggtgatctgctttccttgacctc 269
             ||||||||||||| ||||||||||
Sbjct: 70633 aggtgatctgcttgccttgacctc 70656

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>gb|AC090971.3| Homo sapiens chromosome 15 clone RP11-56B16 map 15q21.3, complete
             sequence
          Length = 192464

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 246   aggtgatctgctttccttgacctc 269
             ||||||||||| ||||||||||||
Sbjct: 30464 aggtgatctgccttccttgacctc 30441

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>gb|AC026440.4|AC026440 Homo sapiens chromosome 5 clone CTD-2269F5, complete sequence
          Length = 103115

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 441   ttgtttatctgctgaccatc 460
             ||||||||||||||||||||
Sbjct: 80466 ttgtttatctgctgaccatc 80485

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>gb|AC023344.4|AC023344 Homo sapiens BAC clone RP11-395G23 from 8, complete sequence
          Length = 186751

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 246   aggtgatctgctttccttgacctc 269
             ||||||||||||| ||||||||||
Sbjct: 63171 aggtgatctgcttgccttgacctc 63148

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>gb|AC131009.7| Homo sapiens 12 BAC RP11-417L19 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 170327

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 200  tcttcttccttctgtgttta 219
            ||||||||||||||||||||
Sbjct: 7732 tcttcttccttctgtgttta 7751

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>gb|AF177535.1|F26C17 Arabidopsis thaliana BAC F26C17
          Length = 53537

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 128   taattgtgtctacaaccatc 147
             ||||||||||||||||||||
Sbjct: 39674 taattgtgtctacaaccatc 39655

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>emb|AL162831.6|CNS01RI2 Human chromosome 14 DNA sequence BAC R-1077A2 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 208102

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 246    aggtgatctgctttccttgacctc 269
              ||||||||||||||||||| ||||
Sbjct: 183035 aggtgatctgctttccttggcctc 183012

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>emb|AL161757.4|CNS01RHK Human chromosome 14 DNA sequence BAC R-1085N6 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 242832

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 246   aggtgatctgctttccttgacctc 269
             ||||||||||||||||||| ||||
Sbjct: 85799 aggtgatctgctttccttggcctc 85776

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>gb|AF086443.1|HUMZD81C11 Homo sapiens full length insert cDNA clone ZD81C11
          Length = 457

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 246 aggtgatctgctttccttgacctc 269
           ||||||||||||| ||||||||||
Sbjct: 209 aggtgatctgcttgccttgacctc 232

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>emb|AL137918.4|CNS01DWQ Human chromosome 14 DNA sequence BAC R-442G21 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 162016

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 246    aggtgatctgctttccttgacctc 269
              ||||||||||||||||||| ||||
Sbjct: 122506 aggtgatctgctttccttggcctc 122483

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>dbj|AP002898.1| Homo sapiens genomic DNA, chromosome 20p, clone:13N6, complete sequence
          Length = 206647

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 110    agaataagaaaagctaacta 129
              ||||||||||||||||||||
Sbjct: 129691 agaataagaaaagctaacta 129672

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>dbj|AP005404.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-94H14, complete
             sequence
          Length = 142000

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 246   aggtgatctgctttccttgacctc 269
             ||||||||||||| ||||||||||
Sbjct: 70782 aggtgatctgcttgccttgacctc 70805


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,630,994
Number of Sequences: 3902068
Number of extensions: 5630994
Number of successful extensions: 114499
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 114311
Number of HSP's gapped (non-prelim): 188
length of query: 612
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 589
effective length of database: 17,143,297,704
effective search space: 10097402347656
effective search space used: 10097402347656
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result