ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags23h16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TM9S3_MOUSE (Q9ET30) Transmembrane 9 superfamily protein member ... 44 2e-04
2TM9S3_HUMAN (Q9HD45) Transmembrane 9 superfamily protein member ... 44 2e-04
3EMP70_YEAST (P32802) Endosomal P24A protein precursor (70 kDa en... 33 0.42
4FBX5_HUMAN (Q9UKT4) F-box only protein 5 (Early mitotic inhibito... 29 7.9
5ARFR_ARATH (Q9C5W9) Auxin response factor 18 29 7.9

>TM9S3_MOUSE (Q9ET30) Transmembrane 9 superfamily protein member 3 precursor|
          Length = 587

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 17/26 (65%), Positives = 23/26 (88%)
 Frame = -3

Query: 495 GILCGAIGYVGSTLFVRRIYRNIKCD 418
           GI+CGAIGY+G++ FVR+IY N+K D
Sbjct: 562 GIMCGAIGYMGTSAFVRKIYTNVKID 587



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>TM9S3_HUMAN (Q9HD45) Transmembrane 9 superfamily protein member 3 precursor|
           (SM-11044-binding protein) (EP70-P-iso)
          Length = 589

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 17/26 (65%), Positives = 23/26 (88%)
 Frame = -3

Query: 495 GILCGAIGYVGSTLFVRRIYRNIKCD 418
           GI+CGAIGY+G++ FVR+IY N+K D
Sbjct: 564 GIMCGAIGYMGTSAFVRKIYTNVKID 589



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>EMP70_YEAST (P32802) Endosomal P24A protein precursor (70 kDa endomembrane|
           protein) (Pheromone alpha-factor transporter) (Acidic 24
           kDa late endocytic intermediate component)
          Length = 667

 Score = 33.1 bits (74), Expect = 0.42
 Identities = 13/25 (52%), Positives = 20/25 (80%)
 Frame = -3

Query: 492 ILCGAIGYVGSTLFVRRIYRNIKCD 418
           ++ G+IG++ S LFVR+IY +IK D
Sbjct: 643 LVTGSIGFISSMLFVRKIYSSIKVD 667



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>FBX5_HUMAN (Q9UKT4) F-box only protein 5 (Early mitotic inhibitor 1)|
          Length = 447

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +1

Query: 145 KETKKNKNLHQALVLNS*ATTDVYTMRAAPGNK*VCKKKGC 267
           K  KKN++L   +  NS A  D Y  RA       CK++GC
Sbjct: 367 KTLKKNESLKACIRCNSPAKYDCYLQRA------TCKREGC 401



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>ARFR_ARATH (Q9C5W9) Auxin response factor 18|
          Length = 602

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 343 FQSNGTYMISSDTAPPPPHICSRKLITFDVSVDSP 447
           + SN ++       PPPP  CS +L  FD++ +SP
Sbjct: 421 YSSNNSF---KPETPPPPTNCSYRLFGFDLTSNSP 452


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,599,249
Number of Sequences: 219361
Number of extensions: 1273298
Number of successful extensions: 3334
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3333
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3523384522
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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