ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags23h13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 139 8e-30
2dbj|AP006438.3| Oryza sativa (japonica cultivar-group) genomic D... 139 8e-30
3dbj|AP004881.2| Oryza sativa (japonica cultivar-group) genomic D... 139 8e-30
4dbj|AK121308.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 8e-30
5gb|AY110825.1| Zea mays CL16923_1 mRNA sequence 113 4e-22
6gb|AC183833.2| Pan troglodytes BAC clone CH251-141C5 from chromo... 44 0.33
7gb|AC099398.5| Homo sapiens BAC clone RP11-731K22 from 7, comple... 44 0.33
8emb|AJ307325.1|HIM307325 Human immunodeficiency virus type 1 vir... 44 0.33
9gb|BC075233.1| Xenopus laevis MGC84425 protein, mRNA (cDNA clone... 42 1.3
10gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 42 1.3
11gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 42 1.3
12dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 42 1.3
13gb|AC114608.5| Mus musculus chromosome 8, clone RP23-418L5, comp... 40 5.2
14ref|XM_362883.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 5.2
15gb|BC003793.1| Mus musculus phosphotriesterase related, mRNA (cD... 40 5.2
16gb|AC124475.3| Mus musculus BAC clone RP24-92F8 from chromosome ... 40 5.2
17emb|BX571772.8| Zebrafish DNA sequence from clone CH211-238E12 i... 40 5.2
18emb|AL589740.4| Human DNA sequence from clone RP11-436D23 on chr... 40 5.2
19ref|NM_008961.2| Mus musculus phosphotriesterase related (Pter),... 40 5.2
20ref|XM_682958.1| PREDICTED: Danio rerio similar to voltage-gated... 40 5.2
21ref|XM_678505.1| PREDICTED: Danio rerio similar to voltage-gated... 40 5.2
22gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome 40 5.2
23dbj|AK075604.1| Mus musculus adult male kidney cDNA, RIKEN full-... 40 5.2
24emb|AL929209.17| Mouse DNA sequence from clone RP23-415C3 on chr... 40 5.2
25gb|U28016.1|MMU28016 Mus musculus parathion hydrolase (phosphotr... 40 5.2
26emb|AL831735.10| Mouse DNA sequence from clone RP23-452D3 on chr... 40 5.2
27dbj|AB045983.1| Mus musculus gene for gliacolin, complete cds 40 5.2 
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  139 bits (70), Expect = 8e-30
 Identities = 76/78 (97%)
 Strand = Plus / Minus

                                                                            
Query: 310      ccttgcagatggggcagacgaccttgaggccgacggcgcgggcctcgagctgggacccct 369
                |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 23910585 ccttgcagatggggcagatgaccttgaggccgacggcgcgggcctcgagctgggacccct 23910526

                                  
Query: 370      tggacttctggttcttct 387
                | ||||||||||||||||
Sbjct: 23910525 tcgacttctggttcttct 23910508



 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                            
Query: 246      ggtttctccctggggtgctttgatccatagtgatcaatcaattgcttctcgttggctagt 305
                ||||| ||| |||| ||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct: 23912022 ggtttttccttgggatgctttgatccatagtgatcaatcaattgtttctcattggccagt 23911963

                  
Query: 306      tg 307
                ||
Sbjct: 23911962 tg 23911961



 Score = 46.1 bits (23), Expect = 0.084
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                   
Query: 89       ggctcttgcctggaacaagaggaaatgcatacatt 123
                |||||| ||| | ||||||||||||||||||||||
Sbjct: 23912177 ggctctagccagaaacaagaggaaatgcatacatt 23912143
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>dbj|AP006438.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0030C08
          Length = 163423

 Score =  139 bits (70), Expect = 8e-30
 Identities = 76/78 (97%)
 Strand = Plus / Minus

                                                                          
Query: 310    ccttgcagatggggcagacgaccttgaggccgacggcgcgggcctcgagctgggacccct 369
              |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 132251 ccttgcagatggggcagatgaccttgaggccgacggcgcgggcctcgagctgggacccct 132192

                                
Query: 370    tggacttctggttcttct 387
              | ||||||||||||||||
Sbjct: 132191 tcgacttctggttcttct 132174



 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                          
Query: 246    ggtttctccctggggtgctttgatccatagtgatcaatcaattgcttctcgttggctagt 305
              ||||| ||| |||| ||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct: 133688 ggtttttccttgggatgctttgatccatagtgatcaatcaattgtttctcattggccagt 133629

                
Query: 306    tg 307
              ||
Sbjct: 133628 tg 133627



 Score = 46.1 bits (23), Expect = 0.084
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                 
Query: 89     ggctcttgcctggaacaagaggaaatgcatacatt 123
              |||||| ||| | ||||||||||||||||||||||
Sbjct: 133843 ggctctagccagaaacaagaggaaatgcatacatt 133809
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>dbj|AP004881.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0496E03
          Length = 138622

 Score =  139 bits (70), Expect = 8e-30
 Identities = 76/78 (97%)
 Strand = Plus / Minus

                                                                         
Query: 310   ccttgcagatggggcagacgaccttgaggccgacggcgcgggcctcgagctgggacccct 369
             |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 44549 ccttgcagatggggcagatgaccttgaggccgacggcgcgggcctcgagctgggacccct 44490

                               
Query: 370   tggacttctggttcttct 387
             | ||||||||||||||||
Sbjct: 44489 tcgacttctggttcttct 44472



 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                         
Query: 246   ggtttctccctggggtgctttgatccatagtgatcaatcaattgcttctcgttggctagt 305
             ||||| ||| |||| ||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct: 45986 ggtttttccttgggatgctttgatccatagtgatcaatcaattgtttctcattggccagt 45927

               
Query: 306   tg 307
             ||
Sbjct: 45926 tg 45925



 Score = 46.1 bits (23), Expect = 0.084
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 89    ggctcttgcctggaacaagaggaaatgcatacatt 123
             |||||| ||| | ||||||||||||||||||||||
Sbjct: 46141 ggctctagccagaaacaagaggaaatgcatacatt 46107
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>dbj|AK121308.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023112A22, full
           insert sequence
          Length = 1947

 Score =  139 bits (70), Expect = 8e-30
 Identities = 76/78 (97%)
 Strand = Plus / Minus

                                                                       
Query: 310 ccttgcagatggggcagacgaccttgaggccgacggcgcgggcctcgagctgggacccct 369
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 ccttgcagatggggcagatgaccttgaggccgacggcgcgggcctcgagctgggacccct 158

                             
Query: 370 tggacttctggttcttct 387
           | ||||||||||||||||
Sbjct: 157 tcgacttctggttcttct 140



 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                        
Query: 246  ggtttctccctggggtgctttgatccatagtgatcaatcaattgcttctcgttggctagt 305
            ||||| ||| |||| ||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct: 1654 ggtttttccttgggatgctttgatccatagtgatcaatcaattgtttctcattggccagt 1595

              
Query: 306  tg 307
            ||
Sbjct: 1594 tg 1593



 Score = 46.1 bits (23), Expect = 0.084
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 89   ggctcttgcctggaacaagaggaaatgcatacatt 123
            |||||| ||| | ||||||||||||||||||||||
Sbjct: 1809 ggctctagccagaaacaagaggaaatgcatacatt 1775
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>gb|AY110825.1| Zea mays CL16923_1 mRNA sequence
          Length = 772

 Score =  113 bits (57), Expect = 4e-22
 Identities = 69/73 (94%)
 Strand = Plus / Minus

                                                                       
Query: 310 ccttgcagatggggcagacgaccttgaggccgacggcgcgggcctcgagctgggacccct 369
           |||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 235 ccttgcagatggagcagacgatcttgaggccgacggcgcgggcctcgagctgagacccct 176

                        
Query: 370 tggacttctggtt 382
           |||| ||||||||
Sbjct: 175 tggatttctggtt 163



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 243 ggaggtttctccctggggtgctttgatccatagtgatc 280
           |||||||||||| | || ||||||||||||||||||||
Sbjct: 302 ggaggtttctcctttggatgctttgatccatagtgatc 265
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>gb|AC183833.2| Pan troglodytes BAC clone CH251-141C5 from chromosome 7, complete
              sequence
          Length = 155911

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 241    ctggaggtttctccctggggtg 262
              ||||||||||||||||||||||
Sbjct: 130350 ctggaggtttctccctggggtg 130371
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>gb|AC099398.5| Homo sapiens BAC clone RP11-731K22 from 7, complete sequence
          Length = 86311

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 241   ctggaggtttctccctggggtg 262
             ||||||||||||||||||||||
Sbjct: 24286 ctggaggtttctccctggggtg 24307
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>emb|AJ307325.1|HIM307325 Human immunodeficiency virus type 1 viral partial pro gene for
           protease, patient 29-0
          Length = 297

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 43  gacagtttgacaagatactcatagaa 68
           |||||| |||||||||||||||||||
Sbjct: 170 gacagtatgacaagatactcatagaa 195
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>gb|BC075233.1| Xenopus laevis MGC84425 protein, mRNA (cDNA clone MGC:84425
            IMAGE:7019446), complete cds
          Length = 1320

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 216  atcagttactctgcatttgat 236
            |||||||||||||||||||||
Sbjct: 1160 atcagttactctgcatttgat 1180
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 326     gacgaccttgaggccgacggc 346
               |||||||||||||||||||||
Sbjct: 1414993 gacgaccttgaggccgacggc 1415013
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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 327    acgaccttgaggccgacggcg 347
              |||||||||||||||||||||
Sbjct: 203753 acgaccttgaggccgacggcg 203733
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 337     ggccgacggcgcgggcctcgagctg 361
               ||||| |||||||||||||||||||
Sbjct: 5404753 ggccggcggcgcgggcctcgagctg 5404777
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>gb|AC114608.5| Mus musculus chromosome 8, clone RP23-418L5, complete sequence
          Length = 190200

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 164   gcagactgagcagcctcagaaaca 187
             |||| |||||||||||||||||||
Sbjct: 94122 gcagtctgagcagcctcagaaaca 94145
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>ref|XM_362883.1| Magnaporthe grisea 70-15 hypothetical protein (MG08554.4) partial
           cds
          Length = 1692

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 323 gcagacgaccttgaggccgacggcgcgg 350
           |||||||||||||| ||||||| |||||
Sbjct: 969 gcagacgaccttgatgccgacgacgcgg 942
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>gb|BC003793.1| Mus musculus phosphotriesterase related, mRNA (cDNA clone MGC:6034
            IMAGE:3601675), complete cds
          Length = 1707

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 49   ttgacaagatactcatagaa 68
            ||||||||||||||||||||
Sbjct: 1093 ttgacaagatactcatagaa 1112
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>gb|AC124475.3| Mus musculus BAC clone RP24-92F8 from chromosome 8, complete sequence
          Length = 212858

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 164    gcagactgagcagcctcagaaaca 187
              |||| |||||||||||||||||||
Sbjct: 196030 gcagtctgagcagcctcagaaaca 196007
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>emb|BX571772.8| Zebrafish DNA sequence from clone CH211-238E12 in linkage group 5,
            complete sequence
          Length = 125812

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 94   ttgcctggaacaagaggaaatgca 117
            |||||||| |||||||||||||||
Sbjct: 5352 ttgcctggtacaagaggaaatgca 5375
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>emb|AL589740.4| Human DNA sequence from clone RP11-436D23 on chromosome 6 Contains
            part of a novel gene, complete sequence
          Length = 187863

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 65   agaaggcaaatacatgctca 84
            ||||||||||||||||||||
Sbjct: 2744 agaaggcaaatacatgctca 2763
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>ref|NM_008961.2| Mus musculus phosphotriesterase related (Pter), mRNA
          Length = 3620

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 49   ttgacaagatactcatagaa 68
            ||||||||||||||||||||
Sbjct: 1185 ttgacaagatactcatagaa 1204
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>ref|XM_682958.1| PREDICTED: Danio rerio similar to voltage-gated calcium channel
            subunit Cav2.2 variant I (LOC559600), mRNA
          Length = 2004

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 94   ttgcctggaacaagaggaaatgca 117
            |||||||| |||||||||||||||
Sbjct: 1220 ttgcctggtacaagaggaaatgca 1243
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>ref|XM_678505.1| PREDICTED: Danio rerio similar to voltage-gated calcium channel
           subunit Cav2.2 variant I (LOC555860), partial mRNA
          Length = 1167

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 94  ttgcctggaacaagaggaaatgca 117
           |||||||| |||||||||||||||
Sbjct: 272 ttgcctggtacaagaggaaatgca 295
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>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 309     gccttgcagatggggcagac 328
               ||||||||||||||||||||
Sbjct: 1991279 gccttgcagatggggcagac 1991260
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>dbj|AK075604.1| Mus musculus adult male kidney cDNA, RIKEN full-length enriched
            library, clone:0610042L23 product:phosphotriesterase
            related, full insert sequence
          Length = 3557

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 49   ttgacaagatactcatagaa 68
            ||||||||||||||||||||
Sbjct: 1123 ttgacaagatactcatagaa 1142
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>emb|AL929209.17| Mouse DNA sequence from clone RP23-415C3 on chromosome 2, complete
             sequence
          Length = 210790

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 49    ttgacaagatactcatagaa 68
             ||||||||||||||||||||
Sbjct: 25867 ttgacaagatactcatagaa 25886
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>gb|U28016.1|MMU28016 Mus musculus parathion hydrolase (phosphotriesterase)-related protein
            mRNA, complete cds
          Length = 1697

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 49   ttgacaagatactcatagaa 68
            ||||||||||||||||||||
Sbjct: 1102 ttgacaagatactcatagaa 1121
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>emb|AL831735.10| Mouse DNA sequence from clone RP23-452D3 on chromosome 2, complete
              sequence
          Length = 193718

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 166    agactgagcagcctcagaaa 185
              ||||||||||||||||||||
Sbjct: 176776 agactgagcagcctcagaaa 176757
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>dbj|AB045983.1| Mus musculus gene for gliacolin, complete cds
          Length = 11031

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 49    ttgacaagatactcatagaa 68
             ||||||||||||||||||||
Sbjct: 10532 ttgacaagatactcatagaa 10513


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,937,641
Number of Sequences: 3902068
Number of extensions: 2937641
Number of successful extensions: 103095
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102922
Number of HSP's gapped (non-prelim): 173
length of query: 389
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 367
effective length of database: 17,147,199,772
effective search space: 6293022316324
effective search space used: 6293022316324
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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