ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags23h12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP003707.4| Oryza sativa (japonica cultivar-group) genomic D... 351 2e-93
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 351 2e-93
3dbj|AP006843.2| Oryza sativa (japonica cultivar-group) genomic D... 351 2e-93
4dbj|AP006165.2| Oryza sativa (japonica cultivar-group) genomic D... 351 2e-93
5dbj|AK099844.1| Oryza sativa (japonica cultivar-group) cDNA clon... 343 5e-91
6gb|AY106584.1| Zea mays PCO085018 mRNA sequence 62 3e-06
7gb|AC137117.15| Mus musculus chromosome 15, clone RP23-242E20, c... 42 2.5
8ref|NM_001035396.1| Bos taurus hypothetical LOC533235 (MGC3121),... 42 2.5
9gb|AC138355.17| Mus musculus chromosome 8, clone RP24-281G1, com... 42 2.5
10gb|AC163489.5| Mus musculus chromosome 8, clone RP24-354I15, com... 42 2.5
11gb|AC123847.4| Mus musculus BAC clone RP23-443O1 from chromosome... 42 2.5
12gb|AC118038.15| Mus musculus chromosome 15, clone RP23-87G17, co... 42 2.5
13ref|XM_844097.1| PREDICTED: Canis familiaris hypothetical protei... 42 2.5
14gb|AC148346.12| Medicago truncatula clone mth2-25m19, complete s... 42 2.5
15gb|AC149578.15| Medicago truncatula clone mth2-94f23, complete s... 42 2.5
16ref|XM_574564.1| PREDICTED: Rattus norvegicus similar to CDNA se... 42 2.5
17gb|BT021795.1| Bos taurus hypothetical protein MGC3121 (MGC3121)... 42 2.5
18gb|AC124344.6| Mus musculus BAC clone RP24-448A7 from 3, complet... 42 2.5
19emb|AL390798.3|CNS06C7P Human chromosome 14 DNA sequence BAC R-2... 42 2.5 
>dbj|AP003707.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1485_B09
          Length = 66599

 Score =  351 bits (177), Expect = 2e-93
 Identities = 292/328 (89%), Gaps = 2/328 (0%)
 Strand = Plus / Minus

                                                                         
Query: 403   ccttcaaagaaatctgagacctggttctccacatcttcagggttgtattttatatacttt 462
             |||||||| |||||||||||||| ||||||| ||||||||||||||| ||||||||| ||
Sbjct: 29381 ccttcaaaaaaatctgagacctgattctccaaatcttcagggttgtactttatatacctt 29322

                                                                         
Query: 463   gcaaaattccttcccccctccagctgccctcggaaccttccaacaaacgaacggtatgct 522
             ||  |||||||||| ||||| ||||| |||||||||||||||||||| ||||| ||||||
Sbjct: 29321 gcggaattccttccaccctctagctgacctcggaaccttccaacaaaagaacgatatgct 29262

                                                                         
Query: 523   ggaaggaccttctctgagatggaaatcttcaactcctctcttaactgaggatccacaacc 582
             |||||||| ||||||||||| ||||||||||||||||||||||| ||||| |||||||||
Sbjct: 29261 ggaaggactttctctgagattgaaatcttcaactcctctcttaattgagggtccacaacc 29202

                                                                         
Query: 583   ctccatgctgtctgtgtcctgtataacttcctcgtaagccaagttgaagctcttgaacct 642
              |||||| |||||||||| |||||||| |||||| | |||||||| ||| ||||||||||
Sbjct: 29201 ttccatgttgtctgtgtcttgtataac-tcctcgaatgccaagttaaagttcttgaacct 29143

                                                                         
Query: 643   ttccttcagtgcagccttgagtgcactcgatgaacctgttggcatgtggcaacccatcat 702
             |||||| |||| ||||||||||||||| ||||||||  ||| | |||||||| |||||||
Sbjct: 29142 ttccttgagtgaagccttgagtgcacttgatgaacccattgtc-tgtggcaatccatcat 29084

                                         
Query: 703   ccctcangcaagctaataccctggtcca 730
             | ||||  |||||||||||||| |||||
Sbjct: 29083 ctctcagacaagctaataccctcgtcca 29056
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  351 bits (177), Expect = 2e-93
 Identities = 292/328 (89%), Gaps = 2/328 (0%)
 Strand = Plus / Minus

                                                                            
Query: 403      ccttcaaagaaatctgagacctggttctccacatcttcagggttgtattttatatacttt 462
                |||||||| |||||||||||||| ||||||| ||||||||||||||| ||||||||| ||
Sbjct: 40230429 ccttcaaaaaaatctgagacctgattctccaaatcttcagggttgtactttatatacctt 40230370

                                                                            
Query: 463      gcaaaattccttcccccctccagctgccctcggaaccttccaacaaacgaacggtatgct 522
                ||  |||||||||| ||||| ||||| |||||||||||||||||||| ||||| ||||||
Sbjct: 40230369 gcggaattccttccaccctctagctgacctcggaaccttccaacaaaagaacgatatgct 40230310

                                                                            
Query: 523      ggaaggaccttctctgagatggaaatcttcaactcctctcttaactgaggatccacaacc 582
                |||||||| ||||||||||| ||||||||||||||||||||||| ||||| |||||||||
Sbjct: 40230309 ggaaggactttctctgagattgaaatcttcaactcctctcttaattgagggtccacaacc 40230250

                                                                            
Query: 583      ctccatgctgtctgtgtcctgtataacttcctcgtaagccaagttgaagctcttgaacct 642
                 |||||| |||||||||| |||||||| |||||| | |||||||| ||| ||||||||||
Sbjct: 40230249 ttccatgttgtctgtgtcttgtataac-tcctcgaatgccaagttaaagttcttgaacct 40230191

                                                                            
Query: 643      ttccttcagtgcagccttgagtgcactcgatgaacctgttggcatgtggcaacccatcat 702
                |||||| |||| ||||||||||||||| ||||||||  ||| | |||||||| |||||||
Sbjct: 40230190 ttccttgagtgaagccttgagtgcacttgatgaacccattgtc-tgtggcaatccatcat 40230132

                                            
Query: 703      ccctcangcaagctaataccctggtcca 730
                | ||||  |||||||||||||| |||||
Sbjct: 40230131 ctctcagacaagctaataccctcgtcca 40230104
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>dbj|AP006843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1793G04
          Length = 156714

 Score =  351 bits (177), Expect = 2e-93
 Identities = 292/328 (89%), Gaps = 2/328 (0%)
 Strand = Plus / Minus

                                                                         
Query: 403   ccttcaaagaaatctgagacctggttctccacatcttcagggttgtattttatatacttt 462
             |||||||| |||||||||||||| ||||||| ||||||||||||||| ||||||||| ||
Sbjct: 96207 ccttcaaaaaaatctgagacctgattctccaaatcttcagggttgtactttatatacctt 96148

                                                                         
Query: 463   gcaaaattccttcccccctccagctgccctcggaaccttccaacaaacgaacggtatgct 522
             ||  |||||||||| ||||| ||||| |||||||||||||||||||| ||||| ||||||
Sbjct: 96147 gcggaattccttccaccctctagctgacctcggaaccttccaacaaaagaacgatatgct 96088

                                                                         
Query: 523   ggaaggaccttctctgagatggaaatcttcaactcctctcttaactgaggatccacaacc 582
             |||||||| ||||||||||| ||||||||||||||||||||||| ||||| |||||||||
Sbjct: 96087 ggaaggactttctctgagattgaaatcttcaactcctctcttaattgagggtccacaacc 96028

                                                                         
Query: 583   ctccatgctgtctgtgtcctgtataacttcctcgtaagccaagttgaagctcttgaacct 642
              |||||| |||||||||| |||||||| |||||| | |||||||| ||| ||||||||||
Sbjct: 96027 ttccatgttgtctgtgtcttgtataac-tcctcgaatgccaagttaaagttcttgaacct 95969

                                                                         
Query: 643   ttccttcagtgcagccttgagtgcactcgatgaacctgttggcatgtggcaacccatcat 702
             |||||| |||| ||||||||||||||| ||||||||  ||| | |||||||| |||||||
Sbjct: 95968 ttccttgagtgaagccttgagtgcacttgatgaacccattgtc-tgtggcaatccatcat 95910

                                         
Query: 703   ccctcangcaagctaataccctggtcca 730
             | ||||  |||||||||||||| |||||
Sbjct: 95909 ctctcagacaagctaataccctcgtcca 95882
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>dbj|AP006165.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1425D05, complete sequence
          Length = 66450

 Score =  351 bits (177), Expect = 2e-93
 Identities = 292/328 (89%), Gaps = 2/328 (0%)
 Strand = Plus / Minus

                                                                         
Query: 403   ccttcaaagaaatctgagacctggttctccacatcttcagggttgtattttatatacttt 462
             |||||||| |||||||||||||| ||||||| ||||||||||||||| ||||||||| ||
Sbjct: 21779 ccttcaaaaaaatctgagacctgattctccaaatcttcagggttgtactttatatacctt 21720

                                                                         
Query: 463   gcaaaattccttcccccctccagctgccctcggaaccttccaacaaacgaacggtatgct 522
             ||  |||||||||| ||||| ||||| |||||||||||||||||||| ||||| ||||||
Sbjct: 21719 gcggaattccttccaccctctagctgacctcggaaccttccaacaaaagaacgatatgct 21660

                                                                         
Query: 523   ggaaggaccttctctgagatggaaatcttcaactcctctcttaactgaggatccacaacc 582
             |||||||| ||||||||||| ||||||||||||||||||||||| ||||| |||||||||
Sbjct: 21659 ggaaggactttctctgagattgaaatcttcaactcctctcttaattgagggtccacaacc 21600

                                                                         
Query: 583   ctccatgctgtctgtgtcctgtataacttcctcgtaagccaagttgaagctcttgaacct 642
              |||||| |||||||||| |||||||| |||||| | |||||||| ||| ||||||||||
Sbjct: 21599 ttccatgttgtctgtgtcttgtataac-tcctcgaatgccaagttaaagttcttgaacct 21541

                                                                         
Query: 643   ttccttcagtgcagccttgagtgcactcgatgaacctgttggcatgtggcaacccatcat 702
             |||||| |||| ||||||||||||||| ||||||||  ||| | |||||||| |||||||
Sbjct: 21540 ttccttgagtgaagccttgagtgcacttgatgaacccattgtc-tgtggcaatccatcat 21482

                                         
Query: 703   ccctcangcaagctaataccctggtcca 730
             | ||||  |||||||||||||| |||||
Sbjct: 21481 ctctcagacaagctaataccctcgtcca 21454
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>dbj|AK099844.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013109B06, full
            insert sequence
          Length = 2342

 Score =  343 bits (173), Expect = 5e-91
 Identities = 291/328 (88%), Gaps = 2/328 (0%)
 Strand = Plus / Minus

                                                                        
Query: 403  ccttcaaagaaatctgagacctggttctccacatcttcagggttgtattttatatacttt 462
            |||||||| |||||||||||||| ||||||| ||||||||||||||| ||||||||| ||
Sbjct: 1935 ccttcaaaaaaatctgagacctgattctccaaatcttcagggttgtactttatatacctt 1876

                                                                        
Query: 463  gcaaaattccttcccccctccagctgccctcggaaccttccaacaaacgaacggtatgct 522
            ||  |||||||||| ||||| ||||| |||||||||||||||||||| ||||| ||||||
Sbjct: 1875 gcggaattccttccaccctctagctgacctcggaaccttccaacaaaagaacgatatgct 1816

                                                                        
Query: 523  ggaaggaccttctctgagatggaaatcttcaactcctctcttaactgaggatccacaacc 582
            |||||||| ||||||||||| ||||||||||||||||||||||| ||||| |||||||||
Sbjct: 1815 ggaaggactttctctgagattgaaatcttcaactcctctcttaattgagggtccacaacc 1756

                                                                        
Query: 583  ctccatgctgtctgtgtcctgtataacttcctcgtaagccaagttgaagctcttgaacct 642
             |||||| |||||||||| |||||||| |||||| | |||||||| ||| ||||||||||
Sbjct: 1755 ttccatgttgtctgtgtcttgtataac-tcctcgaatgccaagttaaagttcttgaacct 1697

                                                                        
Query: 643  ttccttcagtgcagccttgagtgcactcgatgaacctgttggcatgtggcaacccatcat 702
            |||||| |||| ||||||||||||||| ||||||||  ||| | |||||||| |||||||
Sbjct: 1696 ttccttgagtgaagccttgagtgcacttgatgaacccattgtc-tgtggcaatccatcat 1638

                                        
Query: 703  ccctcangcaagctaataccctggtcca 730
            | || |  |||||||||||||| |||||
Sbjct: 1637 ctctaagacaagctaataccctcgtcca 1610
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>gb|AY106584.1| Zea mays PCO085018 mRNA sequence
          Length = 531

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                       
Query: 383 atcaagcattcaattttttcccttcaaagaaatctgagacctggttctccacatcttcag 442
           ||||||||||  | ||| |||||||||| || |||||||| |||||||||| ||| ||||
Sbjct: 458 atcaagcatttgactttctcccttcaaaaaattctgagacatggttctccaaatcatcag 517

                  
Query: 443 ggttgta 449
           |||||||
Sbjct: 518 ggttgta 524
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>gb|AC137117.15| Mus musculus chromosome 15, clone RP23-242E20, complete sequence
          Length = 202147

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 367   aaagatagacagattgatcaa 387
             |||||||||||||||||||||
Sbjct: 40613 aaagatagacagattgatcaa 40593
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>ref|NM_001035396.1| Bos taurus hypothetical LOC533235 (MGC3121), mRNA
          Length = 1917

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 534 ctctgagatggaaatcttcaactcc 558
           ||||||||||| |||||||||||||
Sbjct: 918 ctctgagatggcaatcttcaactcc 894
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>gb|AC138355.17| Mus musculus chromosome 8, clone RP24-281G1, complete sequence
          Length = 154808

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 445   ttgtattttatatactttgca 465
             |||||||||||||||||||||
Sbjct: 65204 ttgtattttatatactttgca 65184
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>gb|AC163489.5| Mus musculus chromosome 8, clone RP24-354I15, complete sequence
          Length = 157478

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 445   ttgtattttatatactttgca 465
             |||||||||||||||||||||
Sbjct: 10669 ttgtattttatatactttgca 10689
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>gb|AC123847.4| Mus musculus BAC clone RP23-443O1 from chromosome 3, complete sequence
          Length = 189689

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 639   acctttccttcagtgcagcct 659
             |||||||||||||||||||||
Sbjct: 21724 acctttccttcagtgcagcct 21744
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>gb|AC118038.15| Mus musculus chromosome 15, clone RP23-87G17, complete sequence
          Length = 209907

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 367  aaagatagacagattgatcaa 387
            |||||||||||||||||||||
Sbjct: 1287 aaagatagacagattgatcaa 1307
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>ref|XM_844097.1| PREDICTED: Canis familiaris hypothetical protein LOC607432
           (LOC607432), mRNA
          Length = 1840

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 534 ctctgagatggaaatcttcaactcc 558
           ||||||||||| |||||||||||||
Sbjct: 867 ctctgagatggcaatcttcaactcc 843
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>gb|AC148346.12| Medicago truncatula clone mth2-25m19, complete sequence
          Length = 122590

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 390   attcaattttttcccttcaaa 410
             |||||||||||||||||||||
Sbjct: 13137 attcaattttttcccttcaaa 13157
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>gb|AC149578.15| Medicago truncatula clone mth2-94f23, complete sequence
          Length = 119657

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 390  attcaattttttcccttcaaa 410
            |||||||||||||||||||||
Sbjct: 1117 attcaattttttcccttcaaa 1097
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>ref|XM_574564.1| PREDICTED: Rattus norvegicus similar to CDNA sequence BC006909
            (LOC499267), mRNA
          Length = 4893

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 534  ctctgagatggaaatcttcaactcc 558
            ||||||||||| |||||||||||||
Sbjct: 1077 ctctgagatggcaatcttcaactcc 1053
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>gb|BT021795.1| Bos taurus hypothetical protein MGC3121 (MGC3121), mRNA, complete
           cds
          Length = 1917

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 534 ctctgagatggaaatcttcaactcc 558
           ||||||||||| |||||||||||||
Sbjct: 918 ctctgagatggcaatcttcaactcc 894
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>gb|AC124344.6| Mus musculus BAC clone RP24-448A7 from 3, complete sequence
          Length = 219818

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 639   acctttccttcagtgcagcct 659
             |||||||||||||||||||||
Sbjct: 14510 acctttccttcagtgcagcct 14490
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>emb|AL390798.3|CNS06C7P Human chromosome 14 DNA sequence BAC R-21O19 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 154140

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 100   cttgcaaatctaacaaccaaa 120
             |||||||||||||||||||||
Sbjct: 86225 cttgcaaatctaacaaccaaa 86205


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8,992,557
Number of Sequences: 3902068
Number of extensions: 8992557
Number of successful extensions: 213831
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 213748
Number of HSP's gapped (non-prelim): 73
length of query: 734
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 711
effective length of database: 17,143,297,704
effective search space: 12188884667544
effective search space used: 12188884667544
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
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