ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags23h03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC130602.5| Oryza sativa (japonica cultivar-group) chromosome... 244 3e-61
2dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 244 3e-61
3dbj|AK106357.1| Oryza sativa (japonica cultivar-group) cDNA clon... 228 2e-56
4gb|AY111077.1| Zea mays CL33046_1 mRNA sequence 190 4e-45
5emb|AL844905.5| Mouse DNA sequence from clone RP23-384C15 on chr... 46 0.14
6ref|XM_672799.1| Plasmodium berghei strain ANKA hypothetical pro... 44 0.53
7gb|AC139369.9| Mus musculus chromosome 1, clone RP24-567B20, com... 42 2.1
8gb|AC007889.9| Drosophila melanogaster clone BACR48E12, complete... 42 2.1
9gb|AC007692.5| Drosophila melanogaster clone BACR06O05, complete... 42 2.1
10gb|AC123034.5| Mus musculus BAC clone RP24-484E17 from chromosom... 42 2.1
11gb|AC138285.8| Mus musculus chromosome 1, clone RP24-383G22, com... 42 2.1
12gb|AE003694.4| Drosophila melanogaster chromosome 3R, section 32... 42 2.1
13gb|AC133188.4| Mus musculus BAC clone RP23-330F6 from 13, comple... 42 2.1
14ref|XM_466297.1| Oryza sativa (japonica cultivar-group), mRNA 40 8.3
15ref|XM_506834.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 8.3
16gb|AC079632.4| Oryza sativa (japonica cultivar-group) chromosome... 40 8.3
17gb|AC147062.4| Pan troglodytes BAC clone RP43-157A2 from 7, comp... 40 8.3
18gb|BT013550.1| Lycopersicon esculentum clone 132277F, mRNA sequence 40 8.3
19gb|AC073109.2| Homo sapiens BAC clone RP11-502P9 from 7, complet... 40 8.3
20gb|AC006972.2| Homo sapiens PAC clone RP4-799O8 from 7, complete... 40 8.3
21emb|AL354933.8| Human DNA sequence from clone RP11-263F15 on chr... 40 8.3
22emb|AL133335.29| Human DNA sequence from clone RP5-1162C3 on chr... 40 8.3
23emb|AL049735.4|HSJ735P11 Human DNA sequence from clone RP4-735P1... 40 8.3
24gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.3
25emb|AL732587.8| Mouse DNA sequence from clone RP23-268K22 on chr... 40 8.3
26gb|AE014175.1| Mus musculus piebald deletion region section 3 of... 40 8.3
27gb|AC106712.5| Homo sapiens 3 BAC RP11-221J22 (Roswell Park Canc... 40 8.3
28gb|AC158525.2| Mus musculus BAC clone RP23-367E3 from chromosome... 40 8.3
29gb|AC000099.1|HSAC000099 Homo sapiens chromosome 7 map 7q31.3 co... 40 8.3
30dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
31dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
32gb|AC105452.3| Homo sapiens BAC clone RP11-122J10 from 4, comple... 40 8.3
33dbj|AP006068.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
34dbj|AP004865.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
35dbj|AK120966.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.3
36gb|AC006384.2|AC006384 Homo sapiens BAC clone RP11-557I6 from 7q... 40 8.3
37dbj|AK071355.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.3
38emb|CR786562.6| Zebrafish DNA sequence from clone CH211-244H7 in... 40 8.3
39emb|BX465210.7| Zebrafish DNA sequence from clone CH211-266A5 in... 40 8.3
40gb|AC114410.9| Mus musculus chromosome 14, clone RP23-151K8, com... 40 8.3
41gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 8.3
42gb|AC002424.1|AC002424 Human cosmid fragment g1613g164 from 7q31... 40 8.3
43gb|AC167966.4| Culex pipiens quinquefasciatus, clone Culex pipie... 40 8.3 
>gb|AC130602.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1122D01,
             complete sequence
          Length = 126532

 Score =  244 bits (123), Expect = 3e-61
 Identities = 303/363 (83%)
 Strand = Plus / Minus

                                                                         
Query: 131   cccatatccaaaaggaaataatggatcgtagttagcacctctaatatctataggcagttg 190
             |||||| |||||||| |||||||| || |   ||||| |||||  || |||||||| |||
Sbjct: 45570 cccatacccaaaagggaataatgggtcatcactagcatctctagcatttataggcaattg 45511

                                                                         
Query: 191   atcgtctgatctaaaccaagttactggcaacgtgcctacaaaatcatggtctccaaagag 250
             |||    || |||||||| || || ||||| || || | ||||||||| || ||||||||
Sbjct: 45510 atcagtagacctaaaccatgtcacgggcaatgtacccaaaaaatcatgatccccaaagag 45451

                                                                         
Query: 251   gcaatcagtcactcccatgccctcacttccaggcaaccaagcaacaactagagcatctac 310
             ||||||||| |||||||| |||||||||||||| | ||| ||| |||| |||||||||||
Sbjct: 45450 gcaatcagtaactcccataccctcacttccaggtagccaggcagcaacaagagcatctac 45391

                                                                         
Query: 311   cttctcaagaacttgtggctcaataaccaagggtcttccagaaataacaatcactagggt 370
             ||| || |||||||| || |||| |||||| ||||||||||| ||||| |  ||||||||
Sbjct: 45390 cttgtccagaacttggggttcaacaaccaatggtcttccagatataaccacaactagggt 45331

                                                                         
Query: 371   agggacttttctagcaacacgagtaattagatctgagccattaaatggaatactaaggtc 430
             ||||||||| ||||||| ||||| ||| || || ||||| ||||||||||||||||| ||
Sbjct: 45330 agggactttactagcaatacgagaaataaggtcggagccgttaaatggaatactaagatc 45271

                                                                         
Query: 431   ggttctatcccccaacccttctgcatagggaacctcacctactacaacaattgcatagga 490
              |||||||| ||||||| ||| || || ||||||||||| || ||||||| |||||||||
Sbjct: 45270 cgttctatctcccaaccattcagcgtatggaacctcaccaaccacaacaactgcatagga 45211

                
Query: 491   aaa 493
             |||
Sbjct: 45210 aaa 45208



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                          
Query: 516   ttctgttgggcattcttcatacacaactt 544
             ||||||||||||||| |||||||||||||
Sbjct: 45186 ttctgttgggcattcctcatacacaactt 45158
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  244 bits (123), Expect = 3e-61
 Identities = 303/363 (83%)
 Strand = Plus / Minus

                                                                            
Query: 131      cccatatccaaaaggaaataatggatcgtagttagcacctctaatatctataggcagttg 190
                |||||| |||||||| |||||||| || |   ||||| |||||  || |||||||| |||
Sbjct: 21926356 cccatacccaaaagggaataatgggtcatcactagcatctctagcatttataggcaattg 21926297

                                                                            
Query: 191      atcgtctgatctaaaccaagttactggcaacgtgcctacaaaatcatggtctccaaagag 250
                |||    || |||||||| || || ||||| || || | ||||||||| || ||||||||
Sbjct: 21926296 atcagtagacctaaaccatgtcacgggcaatgtacccaaaaaatcatgatccccaaagag 21926237

                                                                            
Query: 251      gcaatcagtcactcccatgccctcacttccaggcaaccaagcaacaactagagcatctac 310
                ||||||||| |||||||| |||||||||||||| | ||| ||| |||| |||||||||||
Sbjct: 21926236 gcaatcagtaactcccataccctcacttccaggtagccaggcagcaacaagagcatctac 21926177

                                                                            
Query: 311      cttctcaagaacttgtggctcaataaccaagggtcttccagaaataacaatcactagggt 370
                ||| || |||||||| || |||| |||||| ||||||||||| ||||| |  ||||||||
Sbjct: 21926176 cttgtccagaacttggggttcaacaaccaatggtcttccagatataaccacaactagggt 21926117

                                                                            
Query: 371      agggacttttctagcaacacgagtaattagatctgagccattaaatggaatactaaggtc 430
                ||||||||| ||||||| ||||| ||| || || ||||| ||||||||||||||||| ||
Sbjct: 21926116 agggactttactagcaatacgagaaataaggtcggagccgttaaatggaatactaagatc 21926057

                                                                            
Query: 431      ggttctatcccccaacccttctgcatagggaacctcacctactacaacaattgcatagga 490
                 |||||||| ||||||| ||| || || ||||||||||| || ||||||| |||||||||
Sbjct: 21926056 cgttctatctcccaaccattcagcgtatggaacctcaccaaccacaacaactgcatagga 21925997

                   
Query: 491      aaa 493
                |||
Sbjct: 21925996 aaa 21925994



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                             
Query: 516      ttctgttgggcattcttcatacacaactt 544
                ||||||||||||||| |||||||||||||
Sbjct: 21925972 ttctgttgggcattcctcatacacaactt 21925944
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>dbj|AK106357.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-A08, full
            insert sequence
          Length = 2053

 Score =  228 bits (115), Expect = 2e-56
 Identities = 301/363 (82%)
 Strand = Plus / Minus

                                                                        
Query: 131  cccatatccaaaaggaaataatggatcgtagttagcacctctaatatctataggcagttg 190
            |||||| |||||||| |||||||| || |   ||||| |||||  || |||||||| |||
Sbjct: 1838 cccatacccaaaagggaataatgggtcatcactagcatctctagcatttataggcaattg 1779

                                                                        
Query: 191  atcgtctgatctaaaccaagttactggcaacgtgcctacaaaatcatggtctccaaagag 250
            |||    || |||||||| || || ||||| || || | ||||||||| || ||||||||
Sbjct: 1778 atcagtagacctaaaccatgtcacgggcaatgtacccaaaaaatcatgatccccaaagag 1719

                                                                        
Query: 251  gcaatcagtcactcccatgccctcacttccaggcaaccaagcaacaactagagcatctac 310
            |||| |||| |||||||| |||||||||||||| | ||| ||| |||| |||||||||||
Sbjct: 1718 gcaaacagtaactcccataccctcacttccaggtagccaggcagcaacaagagcatctac 1659

                                                                        
Query: 311  cttctcaagaacttgtggctcaataaccaagggtcttccagaaataacaatcactagggt 370
            ||| || |||||||| || |||| |||||| ||||||||||| | ||| |  ||||||||
Sbjct: 1658 cttgtccagaacttggggttcaacaaccaatggtcttccagatacaaccacaactagggt 1599

                                                                        
Query: 371  agggacttttctagcaacacgagtaattagatctgagccattaaatggaatactaaggtc 430
            ||||||||| ||||||| ||||| ||| || || ||||| ||||||||||||||||| ||
Sbjct: 1598 agggactttactagcaatacgagaaataaggtcggagccgttaaatggaatactaagatc 1539

                                                                        
Query: 431  ggttctatcccccaacccttctgcatagggaacctcacctactacaacaattgcatagga 490
             |||||||| ||||||| ||| || || ||||||||||| || ||||||| |||||||||
Sbjct: 1538 cgttctatctcccaaccattcagcgtatggaacctcaccaaccacaacaactgcatagga 1479

               
Query: 491  aaa 493
            |||
Sbjct: 1478 aaa 1476



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 516  ttctgttgggcattcttcatacacaactt 544
            ||||||||||||||| |||||||||||||
Sbjct: 1454 ttctgttgggcattcctcatacacaactt 1426
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>gb|AY111077.1| Zea mays CL33046_1 mRNA sequence
          Length = 905

 Score =  190 bits (96), Expect = 4e-45
 Identities = 222/264 (84%)
 Strand = Plus / Plus

                                                                       
Query: 176 atctataggcagttgatcgtctgatctaaaccaagttactggcaacgtgcctacaaaatc 235
           ||||||||||| ||||||  | ||  || |||| || || ||||| ||||| ||||||||
Sbjct: 180 atctataggcaattgatcaacagacttacaccatgtcacaggcaatgtgcccacaaaatc 239

                                                                       
Query: 236 atggtctccaaagaggcaatcagtcactcccatgccctcacttccaggcaaccaagcaac 295
           ||| ||||||||||||||||| || | ||||||||||||||||||||||| ||| ||| |
Sbjct: 240 atgatctccaaagaggcaatcggtaattcccatgccctcacttccaggcagccaggcagc 299

                                                                       
Query: 296 aactagagcatctaccttctcaagaacttgtggctcaataaccaagggtcttccagaaat 355
            |||||||| |||| ||| || | |||||||| ||||||||  || || |||||||| ||
Sbjct: 300 gactagagcttctatcttttccaaaacttgtgactcaataattaatggccttccagatat 359

                                                                       
Query: 356 aacaatcactagggtagggacttttctagcaacacgagtaattagatctgagccattaaa 415
           |||||||||||||||||||| ||| || ||||||||  | || || || |||||||||||
Sbjct: 360 aacaatcactagggtagggattttacttgcaacacggatgataaggtcagagccattaaa 419

                                   
Query: 416 tggaatactaaggtcggttctatc 439
            |||||||||||||| ||||||||
Sbjct: 420 cggaatactaaggtcagttctatc 443



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 568 ttgtatggcctctaatatgcttgtaccangagtta 602
           |||||||||||| |||||||| |||||| ||||||
Sbjct: 570 ttgtatggcctccaatatgctcgtaccaagagtta 604
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>emb|AL844905.5| Mouse DNA sequence from clone RP23-384C15 on chromosome 4 Contains an
             NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 10
             (Ndufa10) pseudogene, complete sequence
          Length = 153205

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 224   gcctacaaaatcatggtctccaa 246
             |||||||||||||||||||||||
Sbjct: 71549 gcctacaaaatcatggtctccaa 71527
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>ref|XM_672799.1| Plasmodium berghei strain ANKA hypothetical protein
          (PB106214.00.0) partial mRNA
          Length = 135

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 38 atacatatgtatactattattt 59
          ||||||||||||||||||||||
Sbjct: 38 atacatatgtatactattattt 59
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>gb|AC139369.9| Mus musculus chromosome 1, clone RP24-567B20, complete sequence
          Length = 159817

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 36    acatacatatgtatactatta 56
             |||||||||||||||||||||
Sbjct: 76931 acatacatatgtatactatta 76911
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>gb|AC007889.9| Drosophila melanogaster clone BACR48E12, complete sequence
          Length = 182182

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 26     ctcatgtacaacatacatatg 46
              |||||||||||||||||||||
Sbjct: 176891 ctcatgtacaacatacatatg 176911
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>gb|AC007692.5| Drosophila melanogaster clone BACR06O05, complete sequence
          Length = 184662

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 26    ctcatgtacaacatacatatg 46
             |||||||||||||||||||||
Sbjct: 94354 ctcatgtacaacatacatatg 94374
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>gb|AC123034.5| Mus musculus BAC clone RP24-484E17 from chromosome 13, complete sequence
          Length = 177675

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 433    ttctatcccccaacccttctgcata 457
              ||||||||| |||||||||||||||
Sbjct: 167187 ttctatcccacaacccttctgcata 167163
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>gb|AC138285.8| Mus musculus chromosome 1, clone RP24-383G22, complete sequence
          Length = 216104

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 36     acatacatatgtatactatta 56
              |||||||||||||||||||||
Sbjct: 189165 acatacatatgtatactatta 189145
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>gb|AE003694.4| Drosophila melanogaster chromosome 3R, section 32 of 118 of the complete
              sequence
          Length = 226075

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 26     ctcatgtacaacatacatatg 46
              |||||||||||||||||||||
Sbjct: 103315 ctcatgtacaacatacatatg 103335
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>gb|AC133188.4| Mus musculus BAC clone RP23-330F6 from 13, complete sequence
          Length = 201730

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 433   ttctatcccccaacccttctgcata 457
             ||||||||| |||||||||||||||
Sbjct: 45311 ttctatcccacaacccttctgcata 45287
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>ref|XM_466297.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1673

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 555 cttgcaaagttctttgtatg 574
           ||||||||||||||||||||
Sbjct: 679 cttgcaaagttctttgtatg 660
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>ref|XM_506834.1| PREDICTED Oryza sativa (japonica cultivar-group), P0020C11.43 mRNA
          Length = 1775

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 555 cttgcaaagttctttgtatg 574
           ||||||||||||||||||||
Sbjct: 684 cttgcaaagttctttgtatg 665
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>gb|AC079632.4| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0046L02,
              complete sequence
          Length = 142381

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 269    gccctcacttccaggcaaccaagc 292
              ||||||||||| ||||||||||||
Sbjct: 104610 gccctcacttctaggcaaccaagc 104633
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>gb|AC147062.4| Pan troglodytes BAC clone RP43-157A2 from 7, complete sequence
          Length = 189940

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 444    aacccttctgcatagggaacctca 467
              |||| |||||||||||||||||||
Sbjct: 158925 aacctttctgcatagggaacctca 158948
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>gb|BT013550.1| Lycopersicon esculentum clone 132277F, mRNA sequence
          Length = 2049

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 464  ctcacctactacaacaattgcataggaaaagt 495
            |||||| || |||||||| |||||||||||||
Sbjct: 1588 ctcacccacaacaacaatggcataggaaaagt 1557
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>gb|AC073109.2| Homo sapiens BAC clone RP11-502P9 from 7, complete sequence
          Length = 158340

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 106   tcttcattgcttctgaatatttga 129
             ||||||| ||||||||||||||||
Sbjct: 76687 tcttcatggcttctgaatatttga 76664
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>gb|AC006972.2| Homo sapiens PAC clone RP4-799O8 from 7, complete sequence
          Length = 171537

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 480   attgcataggaaaagttttcttct 503
             |||||||||| |||||||||||||
Sbjct: 74220 attgcataggcaaagttttcttct 74243
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>emb|AL354933.8| Human DNA sequence from clone RP11-263F15 on chromosome 6 Contains a
             keratin 19 (KRT19) pseudogene and a CpG island, complete
             sequence
          Length = 61697

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 485   ataggaaaagttttcttctt 504
             ||||||||||||||||||||
Sbjct: 36248 ataggaaaagttttcttctt 36229
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>emb|AL133335.29| Human DNA sequence from clone RP5-1162C3 on chromosome 20 Contains the
             PFDN4 gene for prefoldin 4 and two CpG islands, complete
             sequence
          Length = 101961

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    acatatgtatactattattt 59
             ||||||||||||||||||||
Sbjct: 20221 acatatgtatactattattt 20202
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>emb|AL049735.4|HSJ735P11 Human DNA sequence from clone RP4-735P11 on chromosome Xp11.3-11.4
             Contains STSs and GSSs, complete sequence
          Length = 68959

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 244   caaagaggcaatcagtcact 263
             ||||||||||||||||||||
Sbjct: 57413 caaagaggcaatcagtcact 57394
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>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
              Pseudo10p0.0-10p4.4, complete sequence
          Length = 2331000

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 269    gccctcacttccaggcaaccaagc 292
              ||||||||||| ||||||||||||
Sbjct: 118716 gccctcacttctaggcaaccaagc 118739
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>emb|AL732587.8| Mouse DNA sequence from clone RP23-268K22 on chromosome 11 Contains the
             3' end of the Galnt9 gene for
             UDP-N-acetyl-alpha-D-galactosamine: polypeptide
             N-acetylgalactosaminyltransferase 9, a novel gene, a novel
             gene (2310079P12Rik), the  Hand1 gene for heart and neural
             crest derivatives expressed transcript 1 (eHAND, Thing1),
             a mitochondrial ribosomal protein S16 pseudogene (Mrps16)
             and two CpG islands, complete sequence
          Length = 132671

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    tacaacatacatatgtatac 51
             ||||||||||||||||||||
Sbjct: 92506 tacaacatacatatgtatac 92525
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>gb|AE014175.1| Mus musculus piebald deletion region section 3 of 11 of the complete
              sequence
          Length = 404829

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 45     tgtatactattatttcaatt 64
              ||||||||||||||||||||
Sbjct: 262415 tgtatactattatttcaatt 262396
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>gb|AC106712.5| Homo sapiens 3 BAC RP11-221J22 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 160742

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 289    aagcaacaactagagcatct 308
              ||||||||||||||||||||
Sbjct: 106283 aagcaacaactagagcatct 106302
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>gb|AC158525.2| Mus musculus BAC clone RP23-367E3 from chromosome 14, complete sequence
          Length = 179650

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 39     tacatatgtatactattatt 58
              ||||||||||||||||||||
Sbjct: 138911 tacatatgtatactattatt 138930
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>gb|AC000099.1|HSAC000099 Homo sapiens chromosome 7 map 7q31.3 cosmid g0771a003, complete
           sequence
          Length = 40677

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 444 aacccttctgcatagggaacctca 467
           |||| |||||||||||||||||||
Sbjct: 61  aacctttctgcatagggaacctca 38
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10,
              complete sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 269    gccctcacttccaggcaaccaagc 292
              ||||||||||| ||||||||||||
Sbjct: 118716 gccctcacttctaggcaaccaagc 118739
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 555      cttgcaaagttctttgtatg 574
                ||||||||||||||||||||
Sbjct: 21550086 cttgcaaagttctttgtatg 21550105
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>gb|AC105452.3| Homo sapiens BAC clone RP11-122J10 from 4, complete sequence
          Length = 154634

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 553   cacttgcaaagttctttgta 572
             ||||||||||||||||||||
Sbjct: 61026 cacttgcaaagttctttgta 61045
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>dbj|AP006068.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0020D05
          Length = 158760

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 555   cttgcaaagttctttgtatg 574
             ||||||||||||||||||||
Sbjct: 39036 cttgcaaagttctttgtatg 39055
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>dbj|AP004865.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0020C11
          Length = 163328

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 555    cttgcaaagttctttgtatg 574
              ||||||||||||||||||||
Sbjct: 145013 cttgcaaagttctttgtatg 145032
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>dbj|AK120966.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023040F07, full
           insert sequence
          Length = 1675

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 555 cttgcaaagttctttgtatg 574
           ||||||||||||||||||||
Sbjct: 681 cttgcaaagttctttgtatg 662
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>gb|AC006384.2|AC006384 Homo sapiens BAC clone RP11-557I6 from 7q11.23-q21.1, complete sequence
          Length = 128959

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 480   attgcataggaaaagttttcttct 503
             |||||||||| |||||||||||||
Sbjct: 59649 attgcataggcaaagttttcttct 59626
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>dbj|AK071355.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023091H20, full
           insert sequence
          Length = 1775

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 555 cttgcaaagttctttgtatg 574
           ||||||||||||||||||||
Sbjct: 684 cttgcaaagttctttgtatg 665
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>emb|CR786562.6| Zebrafish DNA sequence from clone CH211-244H7 in linkage group 18,
              complete sequence
          Length = 144824

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 55     tatttcaattcaaatgtatg 74
              ||||||||||||||||||||
Sbjct: 102135 tatttcaattcaaatgtatg 102154
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>emb|BX465210.7| Zebrafish DNA sequence from clone CH211-266A5 in linkage group 4,
              complete sequence
          Length = 171708

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 28     catgtacaacatacatatgt 47
              ||||||||||||||||||||
Sbjct: 112069 catgtacaacatacatatgt 112050
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>gb|AC114410.9| Mus musculus chromosome 14, clone RP23-151K8, complete sequence
          Length = 201783

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 45     tgtatactattatttcaatt 64
              ||||||||||||||||||||
Sbjct: 134173 tgtatactattatttcaatt 134154
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 269    gccctcacttccaggcaaccaagc 292
              ||||||||||| ||||||||||||
Sbjct: 118714 gccctcacttctaggcaaccaagc 118737
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>gb|AC002424.1|AC002424 Human cosmid fragment g1613g164 from 7q31.3, complete sequence
          Length = 8382

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 444  aacccttctgcatagggaacctca 467
            |||| |||||||||||||||||||
Sbjct: 4155 aacctttctgcatagggaacctca 4178
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>gb|AC167966.4| Culex pipiens quinquefasciatus, clone Culex pipiens
             quinquefasciatus-3940126D9, complete sequence
          Length = 125236

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 324   tgtggctcaataaccaaggg 343
             ||||||||||||||||||||
Sbjct: 16702 tgtggctcaataaccaaggg 16721


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,143,582
Number of Sequences: 3902068
Number of extensions: 6143582
Number of successful extensions: 134815
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 134606
Number of HSP's gapped (non-prelim): 209
length of query: 612
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 589
effective length of database: 17,143,297,704
effective search space: 10097402347656
effective search space used: 10097402347656
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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