>PRM2_ALOSE (P35312) Protamine-2 (Protamine-P2) (Sperm histone P2)|
          Length = 100

 Score = 31.6 bits (70), Expect = 0.48
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -3

Query: 373 RSPGVRDHRPYRQAFSDQERGRLDHRPEEGTAESG 269
           RSP  R HR YRQ  + QE+GR   + E+G +  G
Sbjct: 7   RSPSERPHREYRQLVNGQEQGR-HGQEEQGMSAEG 40

>PRM2_CALJA (Q28337) Protamine-2 (Protamine-P2) (Sperm histone P2)|
          Length = 104

 Score = 30.8 bits (68), Expect = 0.82
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -3

Query: 379 RRRSPGVRDHRPYRQAFSDQERGRLDHRPEEGTAESG 269
           R RSP  R H  YRQ  + QE+GR     +  +AE G
Sbjct: 5   RVRSPSERPHEEYRQLVNWQEQGRNGQEEQGLSAEGG 41

>HUG1_HUMAN (O75698) Protein HUG-1 (HOX11 upstream gene 1 protein)|
          Length = 362

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 28/99 (28%), Positives = 39/99 (39%), Gaps = 12/99 (12%)
 Frame = +3

Query: 51  VHMKEQRRSPPPTTSSRYRAVLKSKDNGHNRLNDIHPHG------------LTKGSVNAS 194
           +H +   R+P PT SS+    L+   N  N      PH             + KG  NA 
Sbjct: 112 LHSRAHGRTPRPTRSSQTHTTLRKAPNWSNSQQWPSPHPPLAPPRSSFPTFVGKGHRNAG 171

Query: 195 KQDRTWKIVARSNTSSGALTSTSRVPDSAVPSSGRWSSR 311
           +  RT +   R  T    ++  + VP   VP S  W SR
Sbjct: 172 QLRRTGQ---RRATGPPGVSFLAAVPLITVPQSS-WGSR 206

>PPIL4_ASPOR (Q2U256) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)|
           (PPIase) (Rotamase)
          Length = 461

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -3

Query: 376 RRSPGVRDHR--PYRQAFSDQERGRLDHR 296
           RR PG R H   P R  + D++RGR +HR
Sbjct: 418 RRRPGDRSHSRSPARGEYRDKDRGRYNHR 446

>DPOLQ_HUMAN (O75417) DNA polymerase theta (EC 2.7.7.7) (DNA polymerase eta)|
          Length = 1762

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 10/22 (45%), Positives = 18/22 (81%)
 Frame = -3

Query: 382  RRRRSPGVRDHRPYRQAFSDQE 317
            RRR  PG++D+ PYR+A ++++
Sbjct: 1618 RRRYLPGIKDNNPYRKAHAERQ 1639

>IPAA_SHIFL (P18010) Invasin ipaA (70 kDa antigen)|
          Length = 633

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
 Frame = +3

Query: 87  TTSSRYRAVLKSKDNGHNRLN--------DIHPHGLTKGSVNASKQDRTWKIVARSNTSS 242
           TTSS+ R+   S   GH  LN         +HP G+T  + N+S  D T    + S+  +
Sbjct: 402 TTSSQERSANNSLSRGHRPLNIQNSSTTPPLHPEGVTSSNDNSS--DTTKSSASLSHRVA 459

Query: 243 GALTSTSRVPDSAV 284
             +   +   DS V
Sbjct: 460 SQINKFNSNTDSKV 473

>ASGX_SYNY3 (P74383) Putative L-asparaginase (EC 3.5.1.1) (L-asparagine|
           amidohydrolase)
          Length = 329

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +3

Query: 174 KGSVNASKQDRTWKIVARSNTSSGALTSTSRVPDSAVPSSGRWSSR 311
           KG++     D   KI A ++T    L    RV DSA+P +G +++R
Sbjct: 171 KGTIGVVALDANGKIAAGTSTGGKGLERIGRVSDSAMP-AGNYATR 215

>Y32K_MCMV (P11641) Hypothetical 32.7 kDa protein [Contains: Hypothetical 9|
           kDa protein]
          Length = 290

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +3

Query: 27  NNCAGRFSVHMKEQRRSPPPTTSSRYRA--VLKSKDNGHNRLNDIHPHGLTKGSVNASKQ 200
           N   GR S     Q +SPP   + R +    ++S+DN  N+L +I    LTK     ++Q
Sbjct: 4   NGYFGRNSRMSSSQTQSPPTDVARRQQTGTAVRSEDNHRNQLENIAVGKLTKSEGAPAQQ 63

Query: 201 D 203
           +
Sbjct: 64  N 64

>NPR1_YEAST (P22211) Nitrogen permease reactivator protein (EC 2.7.11.1)|
          Length = 790

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = +3

Query: 90  TSSRYRAVLKSKDNGHNRLNDIHPHGLTKGSVNASKQDR-TWKIVARSNTSSGALTSTSR 266
           T+S Y    +S+D   + +ND    GL+    + + Q+R T ++   S+TS  A+ S S 
Sbjct: 109 TASFYGTSAQSRDRFGSLINDQGTAGLSSHGGSFAAQNRITSRLSTTSHTSGRAIPSLSS 168

Query: 267 VPDSAVPSSGR 299
               +VP+S +
Sbjct: 169 SIPYSVPNSNK 179

>ROM2_YEAST (P51862) RHO1 GDP-GTP exchange protein 2|
          Length = 1356

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 20/64 (31%), Positives = 32/64 (50%)
 Frame = +3

Query: 129 NGHNRLNDIHPHGLTKGSVNASKQDRTWKIVARSNTSSGALTSTSRVPDSAVPSSGRWSS 308
           N H+ LN++H  G    SV  S  +    +  R +++S AL   + V  +++ S  R S 
Sbjct: 339 NSHSSLNNVHGSG-NSSSVMGSSSNIGLGLKTRVSSTSLALKRYTSVSGTSLSSPRRSSM 397

Query: 309 RPLS 320
            PLS
Sbjct: 398 TPLS 401

>RNF12_HUMAN (Q9NVW2) RING finger protein 12 (LIM domain-interacting RING finger|
           protein) (RING finger LIM domain-binding protein)
           (R-LIM) (NY-REN-43 antigen)
          Length = 624

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
 Frame = +3

Query: 57  MKEQRRSPPPTTSSRYRAVLKSKD--NGHNR---LNDIHPHGLTKGSVNASKQDRTWKIV 221
           +++ +  PPP  S   R    S D  NG +    LN +   G T  S    + +++W+ V
Sbjct: 68  LQQIKEGPPPQNSDENRGGDSSDDVSNGDSIIDWLNSVRQTGNTTRS--GQRGNQSWRAV 125

Query: 222 ARSNTSSG 245
           +R+N +SG
Sbjct: 126 SRTNPNSG 133

>ZN157_HUMAN (P51786) Zinc finger protein 157 (HZF22)|
          Length = 506

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 95  FPISSCLKV*GQRTQQIK*HTSTWTDKRKRQCVEAGSNVENRRTV 229
           F  + C K  G+++Q I  HT T T +R  +C E G     + T+
Sbjct: 218 FECNECGKSFGRKSQLIL-HTRTHTGERPYECTECGKTFSEKATL 261

>MLL3_MOUSE (Q8BRH4) Myeloid/lymphoid or mixed-lineage leukemia protein 3|
           homolog (Histone-lysine N-methyltransferase, H3 lysine-4
           specific MLL3) (EC 2.1.1.43)
          Length = 4903

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 13/66 (19%)
 Frame = -3

Query: 208 VRSCFDALTLPFVSPCGCMS--------FNLLCPLSLDFKTARYREDV-----VGGGDLL 68
           ++ C +  T  +  PC   +        F LLCP  +D    R +ED         GDLL
Sbjct: 294 IKCCEEKCTQMYHYPCAAGAGTFQDFSHFFLLCPEHIDQAPERSKEDANCAVCDSPGDLL 353

Query: 67  CSFICT 50
             F CT
Sbjct: 354 DQFFCT 359

>RNF12_MOUSE (Q9WTV7) RING finger protein 12 (LIM domain-interacting RING finger|
           protein) (RING finger LIM domain-binding protein)
           (R-LIM)
          Length = 600

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
 Frame = +3

Query: 57  MKEQRRSPPPTTSSRYRAVLKSKDNGHNR-----LNDIHPHGLTKGSVNASKQDRTWKIV 221
           +++ +  PPP +    RA   S D  ++      LN +   G T  S     Q  +W+ V
Sbjct: 67  LQQIKEGPPPQSPDENRAGESSDDVTNSDSIIDWLNSVRQTGNTTRSRQRGNQ--SWRAV 124

Query: 222 ARSNTSSG 245
           +R+N +SG
Sbjct: 125 SRTNPNSG 132

>GP112_HUMAN (Q8IZF6) Probable G-protein coupled receptor 112|
          Length = 2799

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +3

Query: 156  HPHGLTKGSVNASKQDRTWKIVARSNTSSGALTSTSRVPDSAVPSS 293
            HP   ++ +++ S  D T  + A    SS   +S +R+P ++ PS+
Sbjct: 2058 HPSSFSRKTMSPSTTDHTLSVGAMPLPSSTITSSWNRIPTASSPST 2103

>CUL7_MOUSE (Q8VE73) Cullin-7 (CUL-7) (p185) (p193) (Fragment)|
          Length = 913

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +3

Query: 150 DIHPHGLTKGSVNASKQDRTWKIVARSNTSSGALTSTSRVPDSAVPSSGRWSS 308
           D+    L +GS    K++R W+ V  S+    A   T R P +   SSGR  S
Sbjct: 24  DVFLRYLCQGSSEEMKKNRYWEKVEVSSNPQRASRLTDRNPKTYWESSGRAGS 76

>ASP_DROME (Q9VC45) Protein abnormal spindle|
          Length = 1954

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 57   MKEQRRSPPPTTSSRYRA 110
            MK+  R PPP TS RY++
Sbjct: 1891 MKQNARKPPPMTSGRYKS 1908

>GALR3_HUMAN (O60755) Galanin receptor type 3 (GAL3-R) (GALR3)|
          Length = 368

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -1

Query: 204 DPASTH*RFLLSVHV-DVCHLICCVRCP*TLRQLD 103
           +P ST   F+L++ V D+C ++CCV    T+  LD
Sbjct: 52  EPGSTTDLFILNLAVADLCFILCCVPFQATIYTLD 86

>PRM2_GORGO (P35313) Protamine-2 (Protamine-P2) (Sperm histone P2)|
          Length = 102

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = -3

Query: 379 RRRSPGVRDHRPYRQAFSDQERGRLDHRPEE 287
           R RSP  R H  YRQ    QE+G   H  EE
Sbjct: 5   RVRSPSERSHEVYRQQLHGQEQGH--HGQEE 33

>RIMM_NITEU (Q82U37) Probable 16S rRNA-processing protein rimM|
          Length = 169

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 293 WPVVEPPSFLIREGLTIRSMIPYSRAPSASK 385
           W +V P +F I + L I ++  YS   SAS+
Sbjct: 44  WQIVRPATFFIHDNLLIVTLTGYSDRTSASE 74

>FCAR_HUMAN (P24071) Immunoglobulin alpha Fc receptor precursor (IgA Fc|
           receptor) (CD89 antigen)
          Length = 287

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 14  PSWSQQLCGPFLGTYERTEKI 76
           PSWSQQ+C P L T+ RT  +
Sbjct: 266 PSWSQQMCQPGL-TFARTPSV 285

>NHL1_CAEEL (Q03601) RING finger protein nhl-1|
          Length = 974

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
 Frame = +3

Query: 69  RRSPPPTTSSRYRAVLKSKDNGHNRL-NDIHPHGLTKGSVNASKQDRT--WKI--VARSN 233
           R   P  +S RYR   + +D   NRL N      L   SV A    RT  W    V RS 
Sbjct: 383 RNPEPDESSIRYRRRQQLEDEAWNRLRNSSAAPSLLTTSVTADSSSRTSPWAADRVTRSV 442

Query: 234 TSSGALTSTSRVPDSAVPSSGRWSSRP 314
             + +  ++  VP++  P +   +S+P
Sbjct: 443 EPTKSRPTSLIVPNTETPRTVSPASKP 469

>GIT1_MOUSE (Q68FF6) ARF GTPase-activating protein GIT1 (G protein-coupled|
           receptor kinase-interactor 1) (GRK-interacting protein
           1)
          Length = 770

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 9/74 (12%)
 Frame = -3

Query: 367 PGVRDHRPYRQAFSDQERGRLDHRPEEGTA--ESGTRLVDVSAPELVLDR-------ATI 215
           PG   HR  RQAFS  E G    +P  GT   E  TRL    + EL  D        A +
Sbjct: 504 PGGSTHRRDRQAFSMYEPGSA-LKPFGGTPGDELATRLQPFHSTELEDDAIYSVHVPAGL 562

Query: 214 FHVRSCFDALTLPF 173
           + +R    A ++PF
Sbjct: 563 YRIRKGVSASSVPF 576

>REPS_STRAM (P36891) Replication initiator protein|
          Length = 459

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -3

Query: 379 RRRSPG-VRDHRPYRQAFSDQERGRLDHRPEEGTAESGTRLVDVSAPEL 236
           RR  P  VRDH       +    G + +RP+ GT   GTR     APEL
Sbjct: 106 RRDIPATVRDHPRVFATLTAPSFGPVHNRPDHGTCRCGTRHAP-DAPEL 153

>CLPP1_COREF (Q8FN37) ATP-dependent Clp protease proteolytic subunit 1 (EC|
           3.4.21.92) (Endopeptidase Clp 1)
          Length = 208

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/13 (84%), Positives = 13/13 (100%)
 Frame = -1

Query: 378 AEGALEYGIIDRI 340
           AEGALEYGIID++
Sbjct: 188 AEGALEYGIIDQV 200


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,838,237
Number of Sequences: 219361
Number of extensions: 993062
Number of successful extensions: 3249
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 3186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3247
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 1386249648
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)