ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal1b07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT017217.1| Zea mays clone EL01N0372E04.c mRNA sequence 107 3e-20
2gb|AY105451.1| Zea mays PCO122767 mRNA sequence 107 3e-20
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
4dbj|AP003526.3| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
5dbj|AK104375.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
6dbj|AK099815.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
7dbj|AK061385.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
8emb|AL354738.13| Human DNA sequence from clone RP11-628O6 on chr... 42 1.3
9gb|AC161286.2| Pan troglodytes BAC clone CH251-332L6 from chromo... 40 5.2
10gb|AC161005.4| Pan troglodytes BAC clone CH251-668M6 from chromo... 40 5.2
11gb|AC125160.3| Mus musculus BAC clone RP24-409P4 from chromosome... 40 5.2
12gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome 40 5.2
13gb|AC161386.4| Pan troglodytes BAC clone CH251-497P4 from chromo... 40 5.2
14dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 5.2 
>gb|BT017217.1| Zea mays clone EL01N0372E04.c mRNA sequence
          Length = 1252

 Score =  107 bits (54), Expect = 3e-20
 Identities = 72/78 (92%)
 Strand = Plus / Minus

                                                                       
Query: 310 gccctctttcttgatccgagaaggcctgacgatacggtcgatgatcccgtactccagggc 369
           ||||||||||||||||| ||| |||||||| ||||||||||||||||||||||| || ||
Sbjct: 880 gccctctttcttgatcctagacggcctgacaatacggtcgatgatcccgtactcgagagc 821

                             
Query: 370 tccttcggcgtcgaagcg 387
            |||||||||||||||||
Sbjct: 820 cccttcggcgtcgaagcg 803
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>gb|AY105451.1| Zea mays PCO122767 mRNA sequence
          Length = 709

 Score =  107 bits (54), Expect = 3e-20
 Identities = 72/78 (92%)
 Strand = Plus / Minus

                                                                       
Query: 310 gccctctttcttgatccgagaaggcctgacgatacggtcgatgatcccgtactccagggc 369
           ||||||||||||||||| ||| |||||||| ||||||||||||||||||||||| || ||
Sbjct: 493 gccctctttcttgatcctagacggcctgacaatacggtcgatgatcccgtactcgagagc 434

                             
Query: 370 tccttcggcgtcgaagcg 387
            |||||||||||||||||
Sbjct: 433 cccttcggcgtcgaagcg 416
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                           
Query: 311     ccctctttcttgatccgagaaggcctgacgatacggtcgatgatcccgtactccagggct 370
               |||||||||||||| ||||||||||| |  |||||||| || ||||| || ||||  |||
Sbjct: 1951928 ccctctttcttgatgcgagaaggcctaataatacggtcaataatcccatattccaaagct 1951869

                                
Query: 371     ccttcggcgtcgaagcg 387
               ||||| || ||||||||
Sbjct: 1951868 ccttcagcatcgaagcg 1951852



 Score = 46.1 bits (23), Expect = 0.084
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                      
Query: 253     catctactagccgagtcccagattccgcagttccttctt 291
               |||||||||||| ||||||||||| || || ||||||||
Sbjct: 1951980 catctactagccaagtcccagattacgtagatccttctt 1951942
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>dbj|AP003526.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0548D03
          Length = 156709

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                         
Query: 311   ccctctttcttgatccgagaaggcctgacgatacggtcgatgatcccgtactccagggct 370
             |||||||||||||| ||||||||||| |  |||||||| || ||||| || ||||  |||
Sbjct: 80708 ccctctttcttgatgcgagaaggcctaataatacggtcaataatcccatattccaaagct 80649

                              
Query: 371   ccttcggcgtcgaagcg 387
             ||||| || ||||||||
Sbjct: 80648 ccttcagcatcgaagcg 80632



 Score = 46.1 bits (23), Expect = 0.084
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                    
Query: 253   catctactagccgagtcccagattccgcagttccttctt 291
             |||||||||||| ||||||||||| || || ||||||||
Sbjct: 80760 catctactagccaagtcccagattacgtagatccttctt 80722
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>dbj|AK104375.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-G04, full
           insert sequence
          Length = 1133

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                       
Query: 311 ccctctttcttgatccgagaaggcctgacgatacggtcgatgatcccgtactccagggct 370
           |||||||||||||| ||||||||||| |  |||||||| || ||||| || ||||  |||
Sbjct: 876 ccctctttcttgatgcgagaaggcctaataatacggtcaataatcccatattccaaagct 817

                            
Query: 371 ccttcggcgtcgaagcg 387
           ||||| || ||||||||
Sbjct: 816 ccttcagcatcgaagcg 800



 Score = 46.1 bits (23), Expect = 0.084
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 253 catctactagccgagtcccagattccgcagttccttctt 291
           |||||||||||| ||||||||||| || || ||||||||
Sbjct: 928 catctactagccaagtcccagattacgtagatccttctt 890
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>dbj|AK099815.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099L17, full
           insert sequence
          Length = 1243

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                       
Query: 311 ccctctttcttgatccgagaaggcctgacgatacggtcgatgatcccgtactccagggct 370
           |||||||||||||| ||||||||||| |  |||||||| || ||||| || ||||  |||
Sbjct: 894 ccctctttcttgatgcgagaaggcctaataatacggtcaataatcccatattccaaagct 835

                            
Query: 371 ccttcggcgtcgaagcg 387
           ||||| || ||||||||
Sbjct: 834 ccttcagcatcgaagcg 818



 Score = 46.1 bits (23), Expect = 0.084
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 253 catctactagccgagtcccagattccgcagttccttctt 291
           |||||||||||| ||||||||||| || || ||||||||
Sbjct: 946 catctactagccaagtcccagattacgtagatccttctt 908
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>dbj|AK061385.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-A01, full
           insert sequence
          Length = 1133

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                       
Query: 311 ccctctttcttgatccgagaaggcctgacgatacggtcgatgatcccgtactccagggct 370
           |||||||||||||| ||||||||||| |  |||||||| || ||||| || ||||  |||
Sbjct: 876 ccctctttcttgatgcgagaaggcctaataatacggtcaataatcccatattccaaagct 817

                            
Query: 371 ccttcggcgtcgaagcg 387
           ||||| || ||||||||
Sbjct: 816 ccttcagcatcgaagcg 800



 Score = 46.1 bits (23), Expect = 0.084
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 253 catctactagccgagtcccagattccgcagttccttctt 291
           |||||||||||| ||||||||||| || || ||||||||
Sbjct: 928 catctactagccaagtcccagattacgtagatccttctt 890
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>emb|AL354738.13| Human DNA sequence from clone RP11-628O6 on chromosome 9 Contains part
             of a novel gene (FLJ20276), complete sequence
          Length = 64981

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 137   caacagattaaatgacatacatcca 161
             |||||||||||||||||| ||||||
Sbjct: 28635 caacagattaaatgacatccatcca 28659
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>gb|AC161286.2| Pan troglodytes BAC clone CH251-332L6 from chromosome 7, complete
              sequence
          Length = 172473

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 51     gtacatatgaaagaacagag 70
              ||||||||||||||||||||
Sbjct: 153229 gtacatatgaaagaacagag 153248
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>gb|AC161005.4| Pan troglodytes BAC clone CH251-668M6 from chromosome 7, complete
             sequence
          Length = 217746

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 51    gtacatatgaaagaacagag 70
             ||||||||||||||||||||
Sbjct: 16612 gtacatatgaaagaacagag 16631
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>gb|AC125160.3| Mus musculus BAC clone RP24-409P4 from chromosome 7, complete sequence
          Length = 178643

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 51    gtacatatgaaagaacagagaaga 74
             ||||| ||||||||||||||||||
Sbjct: 66718 gtacaaatgaaagaacagagaaga 66695
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>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 347     tcgatgatcccgtactccagggct 370
               |||| |||||||||||||||||||
Sbjct: 2015193 tcgaggatcccgtactccagggct 2015170
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>gb|AC161386.4| Pan troglodytes BAC clone CH251-497P4 from chromosome 7, complete
             sequence
          Length = 193048

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 51    gtacatatgaaagaacagag 70
             ||||||||||||||||||||
Sbjct: 83471 gtacatatgaaagaacagag 83490
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 294     ggccggtggtcgagccgccc 313
               ||||||||||||||||||||
Sbjct: 5922373 ggccggtggtcgagccgccc 5922392


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,520,247
Number of Sequences: 3902068
Number of extensions: 2520247
Number of successful extensions: 46430
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46349
Number of HSP's gapped (non-prelim): 81
length of query: 387
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 365
effective length of database: 17,147,199,772
effective search space: 6258727916780
effective search space used: 6258727916780
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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