ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags23g09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK105342.1| Oryza sativa (japonica cultivar-group) cDNA clon... 337 3e-89
2gb|AY109381.1| Zea mays CL3204_1 mRNA sequence 311 2e-81
3gb|BT018673.1| Zea mays clone EL01N0510E07.d mRNA sequence 295 1e-76
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 109 1e-20
5gb|AC118674.3| Genomic sequence for Oryza sativa, Nipponbare str... 109 1e-20
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 109 1e-20
7gb|AF051231.1|AF051231 Picea mariana ISP42-like protein (Sb41) m... 68 4e-08
8ref|NM_112890.3| Arabidopsis thaliana TOM40; voltage-gated ion-s... 44 0.59
9gb|AY117216.1| Arabidopsis thaliana putative membrane import pro... 44 0.59
10gb|AY050925.1| Arabidopsis thaliana putative membrane import pro... 44 0.59
11emb|BX824823.1|CNS0A5JY Arabidopsis thaliana Full-length cDNA Co... 44 0.59
12emb|BX824118.1|CNS0A5LF Arabidopsis thaliana Full-length cDNA Co... 44 0.59
13emb|BX822251.1|CNS0A5UN Arabidopsis thaliana Full-length cDNA Co... 44 0.59
14emb|BX824709.1|CNS0A5IA Arabidopsis thaliana Full-length cDNA Co... 44 0.59
15ref|NM_103923.1| Arabidopsis thaliana voltage-gated ion-selectiv... 42 2.3
16gb|AC144931.29| Medicago truncatula clone mth2-22b18, complete s... 42 2.3
17gb|AC142094.12| Medicago truncatula clone mth2-34h6, complete se... 42 2.3
18gb|AC154857.2| Mus musculus BAC clone RP23-16K21 from chromosome... 42 2.3
19gb|AC102763.10| Mus musculus chromosome 8, clone RP24-500B21, co... 42 2.3
20emb|AL691437.7| Mouse DNA sequence from clone RP23-248J10 on chr... 42 2.3
21gb|CP000025.1| Campylobacter jejuni RM1221, complete genome 40 9.2
22gb|AF069442.1| Arabidopsis thaliana BAC T4I9, chromosome IV, nea... 40 9.2
23gb|AC135228.5| Oryza sativa chromosome 3 BAC OSJNBb0122C16 genom... 40 9.2
24ref|XM_727688.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 9.2
25ref|XM_739719.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 9.2
26emb|BX321882.7| Zebrafish DNA sequence from clone DKEYP-30F1 in ... 40 9.2
27gb|AC124918.5| Rattus norvegicus 4 BAC CH230-4H1 (Children's Hos... 40 9.2
28emb|BX294135.1| Pirellula sp. strain 1 complete genome; segment ... 40 9.2
29emb|AL139076.2|CJ11168X3 Campylobacter jejuni subsp. jejuni NCTC... 40 9.2
30emb|AL161495.2|ATCHRIV7 Arabidopsis thaliana DNA chromosome 4, c... 40 9.2
31emb|BX649633.13| Zebrafish DNA sequence from clone CH211-127A20 ... 40 9.2
32dbj|AB124586.1| Pan troglodytes RBP4 gene for retinol binding pr... 40 9.2
33dbj|AB021267.1| Arabidopsis thaliana copia-like retrotransposon ... 40 9.2
34dbj|AB021266.1| Arabidopsis thaliana copia-like retrotransposon ... 40 9.2
35dbj|AB021264.1| Arabidopsis thaliana copia-like retrotransposon ... 40 9.2
36emb|AL691444.9| Mouse DNA sequence from clone RP23-224E21 on chr... 40 9.2 
>dbj|AK105342.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-G11, full
            insert sequence
          Length = 1638

 Score =  337 bits (170), Expect = 3e-89
 Identities = 290/330 (87%)
 Strand = Plus / Minus

                                                                        
Query: 331  tactctcctacagtcattccaaaaccaaacttgtagttcttctttggatggtcaatctct 390
            ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1066 tactctcctacggtcattccaaaaccaaacttgtagttcttctttgaatggtcaatctct 1007

                                                                        
Query: 391  gcagatagaagaaagttgacacccatgttcagtctctcctccaagtatgcagcaacgaca 450
            ||||| |||||||| || || |||||||||| |||||| ||||| ||||||||||| |||
Sbjct: 1006 gcagaaagaagaaaattaactcccatgttcaatctctcttccaaatatgcagcaacaaca 947

                                                                        
Query: 451  ccatttgagtcaattttgccccttagacggcactgtctaaggatataatcataaccaaca 510
            ||||||||||||| ||| |||||||| |||||||| ||||| ||||| ||||||||||  
Sbjct: 946  ccatttgagtcaaattttccccttagtcggcactgcctaagcatatagtcataaccaaag 887

                                                                        
Query: 511  ctggaagtcacatctctggacatgtggttatacataaagtcagtagcaagagacaccttt 570
            |||||||| || || || |||||||| |||||||| |||||||  ||||| || ||||| 
Sbjct: 886  ctggaagtaacgtcccttgacatgtgattatacatgaagtcagacgcaagggaaaccttc 827

                                                                        
Query: 571  tcagaaactttttggacataacttaacgcaacaataccagtgctagcaacctgtagagta 630
            || |||||||| |||||||| || || ||||| |||||||| || |||||||||||||||
Sbjct: 826  tcggaaactttctggacatagctcaaggcaactataccagtactggcaacctgtagagta 767

                                          
Query: 631  cccaccattttatctgtattgtagcgagaa 660
            |||||||||||||||| ||| || ||||||
Sbjct: 766  cccaccattttatctgaattatatcgagaa 737
to top
>gb|AY109381.1| Zea mays CL3204_1 mRNA sequence
          Length = 1476

 Score =  311 bits (157), Expect = 2e-81
 Identities = 286/329 (86%)
 Strand = Plus / Plus

                                                                       
Query: 331 tactctcctacagtcattccaaaaccaaacttgtagttcttctttggatggtcaatctct 390
           ||||||||||| ||||||||||||||||||||||||||||||||   |||||||||||| 
Sbjct: 412 tactctcctacggtcattccaaaaccaaacttgtagttcttcttacaatggtcaatctca 471

                                                                       
Query: 391 gcagatagaagaaagttgacacccatgttcagtctctcctccaagtatgcagcaacgaca 450
           ||||||||||| |||||||||||||||||||  ||||| ||||||||||| ||||| |||
Sbjct: 472 gcagatagaaggaagttgacacccatgttcaacctctcttccaagtatgcggcaacaaca 531

                                                                       
Query: 451 ccatttgagtcaattttgccccttagacggcactgtctaaggatataatcataaccaaca 510
           ||||| ||||| |||||||| ||||| |||||||| ||||| |  |||||||||||||  
Sbjct: 532 ccattcgagtctattttgcctcttaggcggcactgcctaagcaagtaatcataaccaaag 591

                                                                       
Query: 511 ctggaagtcacatctctggacatgtggttatacataaagtcagtagcaagagacaccttt 570
           |||| ||| |||||||| ||||| ||||||||||| |||||||  ||||| || ||||| 
Sbjct: 592 ctggcagttacatctcttgacatatggttatacatgaagtcagacgcaagggaaaccttc 651

                                                                       
Query: 571 tcagaaactttttggacataacttaacgcaacaataccagtgctagcaacctgtagagta 630
           || ||||  || |||||||||||||| ||||| || |||||||| || ||||||||||| 
Sbjct: 652 tcggaaatcttctggacataacttaaggcaactattccagtgcttgcgacctgtagagtg 711

                                        
Query: 631 cccaccattttatctgtattgtagcgaga 659
           ||||||||||| ||||| |||||||||||
Sbjct: 712 cccaccattttgtctgtgttgtagcgaga 740
to top
>gb|BT018673.1| Zea mays clone EL01N0510E07.d mRNA sequence
          Length = 1429

 Score =  295 bits (149), Expect = 1e-76
 Identities = 284/329 (86%)
 Strand = Plus / Minus

                                                                        
Query: 331  tactctcctacagtcattccaaaaccaaacttgtagttcttctttggatggtcaatctct 390
            ||||||||||| ||||||||||||||||||||||||||||||||   |||||||||||| 
Sbjct: 1047 tactctcctacggtcattccaaaaccaaacttgtagttcttcttacaatggtcaatctca 988

                                                                        
Query: 391  gcagatagaagaaagttgacacccatgttcagtctctcctccaagtatgcagcaacgaca 450
            ||||||||||| |||||||||||||||||||  ||||| ||||||||||| |||||  ||
Sbjct: 987  gcagatagaaggaagttgacacccatgttcaacctctcttccaagtatgcggcaacacca 928

                                                                        
Query: 451  ccatttgagtcaattttgccccttagacggcactgtctaaggatataatcataaccaaca 510
            ||||| ||||| |||||||| ||||| |||||||| ||||| |  |||||||||||||  
Sbjct: 927  ccattcgagtctattttgcctcttaggcggcactgcctaagcaagtaatcataaccaaag 868

                                                                        
Query: 511  ctggaagtcacatctctggacatgtggttatacataaagtcagtagcaagagacaccttt 570
            |||| ||| |||||||| ||||| ||||||||||| |||||||  ||||| || ||||| 
Sbjct: 867  ctggcagttacatctcttgacatatggttatacatgaagtcagacgcaagggaaaccttc 808

                                                                        
Query: 571  tcagaaactttttggacataacttaacgcaacaataccagtgctagcaacctgtagagta 630
            || ||||  || |||||||||| ||| ||||| || |||||||| || ||||||||||| 
Sbjct: 807  tcggaaatcttctggacataacgtaaggcaactattccagtgcttgcgacctgtagagtg 748

                                         
Query: 631  cccaccattttatctgtattgtagcgaga 659
            ||||||||||| ||||| |||||||||||
Sbjct: 747  cccaccattttgtctgtgttgtagcgaga 719
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  109 bits (55), Expect = 1e-20
 Identities = 88/99 (88%)
 Strand = Plus / Minus

                                                                            
Query: 387      ctctgcagatagaagaaagttgacacccatgttcagtctctcctccaagtatgcagcaac 446
                ||||||||| |||||||| || || |||||||||| |||||| ||||| |||||||||||
Sbjct: 11719863 ctctgcagaaagaagaaaattaactcccatgttcaatctctcttccaaatatgcagcaac 11719804

                                                       
Query: 447      gacaccatttgagtcaattttgccccttagacggcactg 485
                 |||||||||||||||| ||| |||||||| ||||||||
Sbjct: 11719803 aacaccatttgagtcaaattttccccttagtcggcactg 11719765



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 56/58 (96%)
 Strand = Plus / Minus

                                                                          
Query: 331      tactctcctacagtcattccaaaaccaaacttgtagttcttctttggatggtcaatct 388
                ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 11720508 tactctcctacggtcattccaaaaccaaacttgtagttcttctttgaatggtcaatct 11720451



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 63/72 (87%)
 Strand = Plus / Minus

                                                                            
Query: 565      accttttcagaaactttttggacataacttaacgcaacaataccagtgctagcaacctgt 624
                ||||| || |||||||| |||||||| || || ||||| |||||||| || |||||||||
Sbjct: 11719406 accttctcggaaactttctggacatagctcaaggcaactataccagtactggcaacctgt 11719347

                            
Query: 625      agagtacccacc 636
                ||||||||||||
Sbjct: 11719346 agagtacccacc 11719335



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 535      tggttatacataaagtcagt 554
                ||||||||||||||||||||
Sbjct: 29200841 tggttatacataaagtcagt 29200822
to top
>gb|AC118674.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBb0093J20, from chromosome 3, complete sequence
          Length = 148635

 Score =  109 bits (55), Expect = 1e-20
 Identities = 88/99 (88%)
 Strand = Plus / Minus

                                                                          
Query: 387    ctctgcagatagaagaaagttgacacccatgttcagtctctcctccaagtatgcagcaac 446
              ||||||||| |||||||| || || |||||||||| |||||| ||||| |||||||||||
Sbjct: 108958 ctctgcagaaagaagaaaattaactcccatgttcaatctctcttccaaatatgcagcaac 108899

                                                     
Query: 447    gacaccatttgagtcaattttgccccttagacggcactg 485
               |||||||||||||||| ||| |||||||| ||||||||
Sbjct: 108898 aacaccatttgagtcaaattttccccttagtcggcactg 108860



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 56/58 (96%)
 Strand = Plus / Minus

                                                                        
Query: 331    tactctcctacagtcattccaaaaccaaacttgtagttcttctttggatggtcaatct 388
              ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 109603 tactctcctacggtcattccaaaaccaaacttgtagttcttctttgaatggtcaatct 109546



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 63/72 (87%)
 Strand = Plus / Minus

                                                                          
Query: 565    accttttcagaaactttttggacataacttaacgcaacaataccagtgctagcaacctgt 624
              ||||| || |||||||| |||||||| || || ||||| |||||||| || |||||||||
Sbjct: 108501 accttctcggaaactttctggacatagctcaaggcaactataccagtactggcaacctgt 108442

                          
Query: 625    agagtacccacc 636
              ||||||||||||
Sbjct: 108441 agagtacccacc 108430
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  109 bits (55), Expect = 1e-20
 Identities = 88/99 (88%)
 Strand = Plus / Minus

                                                                            
Query: 387      ctctgcagatagaagaaagttgacacccatgttcagtctctcctccaagtatgcagcaac 446
                ||||||||| |||||||| || || |||||||||| |||||| ||||| |||||||||||
Sbjct: 11716626 ctctgcagaaagaagaaaattaactcccatgttcaatctctcttccaaatatgcagcaac 11716567

                                                       
Query: 447      gacaccatttgagtcaattttgccccttagacggcactg 485
                 |||||||||||||||| ||| |||||||| ||||||||
Sbjct: 11716566 aacaccatttgagtcaaattttccccttagtcggcactg 11716528



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 56/58 (96%)
 Strand = Plus / Minus

                                                                          
Query: 331      tactctcctacagtcattccaaaaccaaacttgtagttcttctttggatggtcaatct 388
                ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 11717271 tactctcctacggtcattccaaaaccaaacttgtagttcttctttgaatggtcaatct 11717214



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 63/72 (87%)
 Strand = Plus / Minus

                                                                            
Query: 565      accttttcagaaactttttggacataacttaacgcaacaataccagtgctagcaacctgt 624
                ||||| || |||||||| |||||||| || || ||||| |||||||| || |||||||||
Sbjct: 11716169 accttctcggaaactttctggacatagctcaaggcaactataccagtactggcaacctgt 11716110

                            
Query: 625      agagtacccacc 636
                ||||||||||||
Sbjct: 11716109 agagtacccacc 11716098



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 535      tggttatacataaagtcagt 554
                ||||||||||||||||||||
Sbjct: 29292263 tggttatacataaagtcagt 29292244
to top
>gb|AF051231.1|AF051231 Picea mariana ISP42-like protein (Sb41) mRNA, partial cds
          Length = 651

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 207/262 (79%), Gaps = 2/262 (0%)
 Strand = Plus / Minus

                                                                       
Query: 333 ctctcctacagtcattccaaaaccaaacttgtagttcttctttggatggtcaatctctgc 392
           |||||| |||||||| ||||||||||||||||| |  |||||   ||| |||||||||||
Sbjct: 280 ctctccaacagtcatcccaaaaccaaacttgtaatctttcttccaatgatcaatctctgc 221

                                                                       
Query: 393 agatagaagaaagttgacacccatgttcagtctctcctccaagtatgcagcaacgaca-c 451
           ||| |||| ||| || || ||||| |||| ||| || ||||  || ||||| || ||| |
Sbjct: 220 agaaagaacaaaattcactcccatattcaatctttcttccagataagcagctac-acacc 162

                                                                       
Query: 452 catttgagtcaattttgccccttagacggcactgtctaaggatataatcataaccaacac 511
           ||||||  |||||  | ||||| || |||||||| | ||| |  ||||||||||||||||
Sbjct: 161 catttgtatcaatccttcccctcagccggcactgccgaagtaggtaatcataaccaacac 102

                                                                       
Query: 512 tggaagtcacatctctggacatgtggttatacataaagtcagtagcaagagacacctttt 571
           | |  ||   |||||| |||||||| || ||||| || ||||  || || ||||||||||
Sbjct: 101 tagctgttgaatctcttgacatgtgattgtacatgaaatcagatgccagtgacacctttt 42

                                 
Query: 572 cagaaactttttggacataact 593
           | || ||||| || ||||||||
Sbjct: 41  cggagactttctgcacataact 20
to top
>ref|NM_112890.3| Arabidopsis thaliana TOM40; voltage-gated ion-selective channel
            AT3G20000 (TOM40) mRNA, complete cds
          Length = 1343

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                      
Query: 352  aaaccaaacttgtagttcttctttggatggtcaatctctgcagatagaagaaagttga 409
            |||||||||||||||| ||||||   ||| || | ||||||||| |||||||| ||||
Sbjct: 1006 aaaccaaacttgtagtccttcttcttatgatccagctctgcagaaagaagaaaattga 949
to top
>gb|AY117216.1| Arabidopsis thaliana putative membrane import protein (At3g20000)
           mRNA, complete cds
          Length = 961

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                     
Query: 352 aaaccaaacttgtagttcttctttggatggtcaatctctgcagatagaagaaagttga 409
           |||||||||||||||| ||||||   ||| || | ||||||||| |||||||| ||||
Sbjct: 911 aaaccaaacttgtagtccttcttcttatgatccagctctgcagaaagaagaaaattga 854
to top
>gb|AY050925.1| Arabidopsis thaliana putative membrane import protein (At3g20000)
           mRNA, complete cds
          Length = 1329

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                     
Query: 352 aaaccaaacttgtagttcttctttggatggtcaatctctgcagatagaagaaagttga 409
           |||||||||||||||| ||||||   ||| || | ||||||||| |||||||| ||||
Sbjct: 976 aaaccaaacttgtagtccttcttcttatgatccagctctgcagaaagaagaaaattga 919
to top
>emb|BX824823.1|CNS0A5JY Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH75ZE08 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1290

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                      
Query: 352  aaaccaaacttgtagttcttctttggatggtcaatctctgcagatagaagaaagttga 409
            |||||||||||||||| ||||||   ||| || | ||||||||| |||||||| ||||
Sbjct: 1001 aaaccaaacttgtagtccttcttcttatgatccagctctgcagaaagaagaaaattga 944
to top
>emb|BX824118.1|CNS0A5LF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH23ZF07 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1026

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                     
Query: 352 aaaccaaacttgtagttcttctttggatggtcaatctctgcagatagaagaaagttga 409
           |||||||||||||||| ||||||   ||| || | ||||||||| |||||||| ||||
Sbjct: 704 aaaccaaacttgtagtccttcttcttatgatccagctctgcagaaagaagaaaattga 647
to top
>emb|BX822251.1|CNS0A5UN Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB23ZB11 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1301

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                      
Query: 352  aaaccaaacttgtagttcttctttggatggtcaatctctgcagatagaagaaagttga 409
            |||||||||||||||| ||||||   ||| || | ||||||||| |||||||| ||||
Sbjct: 1006 aaaccaaacttgtagtccttcttcttatgatccagctctgcagaaagaagaaaattga 949
to top
>emb|BX824709.1|CNS0A5IA Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH66ZG09 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1287

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                      
Query: 352  aaaccaaacttgtagttcttctttggatggtcaatctctgcagatagaagaaagttga 409
            |||||||||||||||| ||||||   ||| || | ||||||||| |||||||| ||||
Sbjct: 1004 aaaccaaacttgtagtccttcttcttatgatccagctctgcagaaagaagaaaattga 947
to top
>ref|NM_103923.1| Arabidopsis thaliana voltage-gated ion-selective channel AT1G50400
           mRNA, complete cds
          Length = 933

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                
Query: 352 aaaccaaacttgtagttcttctttggatggtcaatctctgcagatagaagaaa 404
           |||||||||||||| | ||||||   ||| || | ||||||||||||||||||
Sbjct: 914 aaaccaaacttgtaatccttcttcacatgatccacctctgcagatagaagaaa 862
to top
>gb|AC144931.29| Medicago truncatula clone mth2-22b18, complete sequence
          Length = 122819

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 564    caccttttcagaaactttttggacataacttaa 596
              ||||||||||||||| ||||| ||||| |||||
Sbjct: 103943 caccttttcagaaaccttttgaacatagcttaa 103911
to top
>gb|AC142094.12| Medicago truncatula clone mth2-34h6, complete sequence
          Length = 151594

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 564   caccttttcagaaactttttggacataacttaa 596
             ||||||||||||||| ||||| ||||| |||||
Sbjct: 47653 caccttttcagaaaccttttgaacatagcttaa 47685
to top
>gb|AC154857.2| Mus musculus BAC clone RP23-16K21 from chromosome 13, complete sequence
          Length = 214859

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 114   tcagcttgttcaacaaaaaatcatg 138
             |||||||| ||||||||||||||||
Sbjct: 68524 tcagcttggtcaacaaaaaatcatg 68548
to top
>gb|AC102763.10| Mus musculus chromosome 8, clone RP24-500B21, complete sequence
          Length = 161528

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 123   tcaacaaaaaatcatggacgcccaaatgcccat 155
             ||||||||||||||||||| || ||||| ||||
Sbjct: 36591 tcaacaaaaaatcatggacaccaaaatgaccat 36559
to top
>emb|AL691437.7| Mouse DNA sequence from clone RP23-248J10 on chromosome 2, complete
             sequence
          Length = 115517

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 361   ttgtagttcttctttggatgg 381
             |||||||||||||||||||||
Sbjct: 82192 ttgtagttcttctttggatgg 82172
to top
>gb|CP000025.1| Campylobacter jejuni RM1221, complete genome
          Length = 1777831

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 115    cagcttgttcaacaaaaaat 134
              ||||||||||||||||||||
Sbjct: 964398 cagcttgttcaacaaaaaat 964417
to top
>gb|AF069442.1| Arabidopsis thaliana BAC T4I9, chromosome IV, near 17 cM, complete
             sequence
          Length = 98913

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 569   tttcagaaactttttggaca 588
             ||||||||||||||||||||
Sbjct: 68383 tttcagaaactttttggaca 68402
to top
>gb|AC135228.5| Oryza sativa chromosome 3 BAC OSJNBb0122C16 genomic sequence, complete
             sequence
          Length = 129440

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 535   tggttatacataaagtcagt 554
             ||||||||||||||||||||
Sbjct: 32702 tggttatacataaagtcagt 32683
to top
>ref|XM_727688.1| Plasmodium chabaudi chabaudi hypothetical protein (PC301980.00.0)
           partial mRNA
          Length = 348

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 563 acaccttttcagaaactttt 582
           ||||||||||||||||||||
Sbjct: 209 acaccttttcagaaactttt 228
to top
>ref|XM_739719.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000618.02.0)
           partial mRNA
          Length = 618

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 563 acaccttttcagaaactttt 582
           ||||||||||||||||||||
Sbjct: 479 acaccttttcagaaactttt 498
to top
>emb|BX321882.7| Zebrafish DNA sequence from clone DKEYP-30F1 in linkage group 12,
             complete sequence
          Length = 187475

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 78    tccaacagccaaagagaaca 97
             ||||||||||||||||||||
Sbjct: 58462 tccaacagccaaagagaaca 58443
to top
>gb|AC124918.5| Rattus norvegicus 4 BAC CH230-4H1 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 228052

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 147    aatgcccatgctatctaaag 166
              ||||||||||||||||||||
Sbjct: 136595 aatgcccatgctatctaaag 136576
to top
>emb|BX294135.1| Pirellula sp. strain 1 complete genome; segment 3/24
          Length = 340750

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 442    gcaacgacaccatttgagtcaatt 465
              |||||||||||||||| |||||||
Sbjct: 146366 gcaacgacaccatttgggtcaatt 146343
to top
>emb|AL139076.2|CJ11168X3 Campylobacter jejuni subsp. jejuni NCTC 11168 complete genome; segment
              3/6
          Length = 317511

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 115    cagcttgttcaacaaaaaat 134
              ||||||||||||||||||||
Sbjct: 263562 cagcttgttcaacaaaaaat 263581
to top
>emb|AL161495.2|ATCHRIV7 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 7
          Length = 199615

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 569    tttcagaaactttttggaca 588
              ||||||||||||||||||||
Sbjct: 160719 tttcagaaactttttggaca 160700
to top
>emb|BX649633.13| Zebrafish DNA sequence from clone CH211-127A20 in linkage group 18,
             complete sequence
          Length = 164724

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 78    tccaacagccaaagagaaca 97
             ||||||||||||||||||||
Sbjct: 96436 tccaacagccaaagagaaca 96455
to top
>dbj|AB124586.1| Pan troglodytes RBP4 gene for retinol binding protein4, complete cds
          Length = 173042

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 33    catttcacagaagcctattg 52
             ||||||||||||||||||||
Sbjct: 58366 catttcacagaagcctattg 58385
to top
>dbj|AB021267.1| Arabidopsis thaliana copia-like retrotransposon AtRE2-2 gene for
            polyprotein, complete cds
          Length = 7342

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 569  tttcagaaactttttggaca 588
            ||||||||||||||||||||
Sbjct: 3109 tttcagaaactttttggaca 3128
to top
>dbj|AB021266.1| Arabidopsis thaliana copia-like retrotransposon AtRE2-1 gene for
            polyprotein, complete cds
          Length = 7281

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 569  tttcagaaactttttggaca 588
            ||||||||||||||||||||
Sbjct: 4099 tttcagaaactttttggaca 4118
to top
>dbj|AB021264.1| Arabidopsis thaliana copia-like retrotransposon AtRE2 gene for
            polyprotein, complete cds
          Length = 7989

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 569  tttcagaaactttttggaca 588
            ||||||||||||||||||||
Sbjct: 4116 tttcagaaactttttggaca 4135
to top
>emb|AL691444.9| Mouse DNA sequence from clone RP23-224E21 on chromosome 2, complete
              sequence
          Length = 182726

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 82     acagccaaagagaacattat 101
              ||||||||||||||||||||
Sbjct: 132145 acagccaaagagaacattat 132164


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,788,641
Number of Sequences: 3902068
Number of extensions: 5788641
Number of successful extensions: 106130
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 105930
Number of HSP's gapped (non-prelim): 205
length of query: 670
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 647
effective length of database: 17,143,297,704
effective search space: 11091713614488
effective search space used: 11091713614488
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top