ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags23g07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009604.1| Triticum aestivum clone wre1n.pk0082.c6:fis, full... 777 0.0
2gb|AY011123.1| Dactylis glomerata mitochondrial processing pepti... 414 e-112
3dbj|AK101856.1| Oryza sativa (japonica cultivar-group) cDNA clon... 297 3e-77
4dbj|AK071930.1| Oryza sativa (japonica cultivar-group) cDNA clon... 297 3e-77
5ref|NM_189667.1| Oryza sativa (japonica cultivar-group), predic... 278 2e-71
6gb|AY108609.1| Zea mays PCO088346 mRNA sequence 139 1e-29
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 86 2e-13
8dbj|AP002743.1| Oryza sativa (japonica cultivar-group) genomic D... 86 2e-13
9gb|AC131455.5| Medicago truncatula clone mth1-42h9, complete seq... 46 0.16
10emb|AL049820.23|HSDJ137K2 Human DNA sequence from clone RP1-137K... 46 0.16
11gb|AC102910.13| Mus musculus chromosome 15, clone RP24-280E23, c... 42 2.5
12gb|AC110209.11| Mus musculus chromosome 12, clone RP23-279O18, c... 42 2.5
13ref|XM_844275.1| PREDICTED: Canis familiaris hypothetical protei... 42 2.5
14gb|AC127553.3| Mus musculus BAC clone RP24-553F11 from chromosom... 42 2.5
15ref|XM_758790.1| Theileria parva strain Muguga chromosome 4 hypo... 42 2.5
16gb|AC080073.6| Homo sapiens BAC clone RP11-321C7 from 7, complet... 42 2.5
17emb|AL645617.9| Human DNA sequence from clone RP11-796C22 on chr... 42 2.5
18emb|AL022144.1|HS35C21 Human DNA sequence from clone RP1-35C21 o... 42 2.5
19gb|AC104109.3| Homo sapiens chromosome 5 clone CTD-2410N18, comp... 42 2.5
20ref|NM_065960.2| Caenorhabditis elegans T12A2.8 (T12A2.8) mRNA, ... 42 2.5
21gb|AC114763.6| Homo sapiens BAC clone RP11-369K2 from 2, complet... 42 2.5
22emb|BX469897.6| Zebrafish DNA sequence from clone CH211-39F22 in... 42 2.5
23emb|CT009504.11| Mouse DNA sequence from clone RP23-149M9 on chr... 42 2.5
24gb|AC110037.13| Mus musculus chromosome 5, clone RP23-257E17, co... 42 2.5
25gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome 42 2.5
26gb|AC131190.3| Mus musculus BAC clone RP24-332E15 from chromosom... 40 9.7
27gb|AC165293.2| Mus musculus BAC clone RP23-268A5 from chromosome... 40 9.7
28gb|AC183773.2| Pan troglodytes BAC clone CH251-2N7 from chromoso... 40 9.7
29emb|Z81503.1|CEF14F7 Caenorhabditis elegans Cosmid F14F7, comple... 40 9.7
30gb|AC122496.2| Mus musculus BAC clone RP24-400K16 from 5, comple... 40 9.7
31gb|AE004284.1| Vibrio cholerae O1 biovar eltor str. N16961 chrom... 40 9.7
32gb|AF101305.2| Caenorhabditis elegans cosmid C04F5, complete seq... 40 9.7
33gb|AE014830.1| Plasmodium falciparum 3D7 chromosome 10 section 2... 40 9.7
34emb|AL121908.16|HSDJ719C8 Human DNA sequence from clone RP4-719C... 40 9.7
35emb|CR392344.7| Zebrafish DNA sequence from clone CH211-239D11 i... 40 9.7
36gb|AC165442.1| Mus musculus BAC clone RP23-164P21 from chromosom... 40 9.7
37gb|AF498420.1| Pseudomonas aeruginosa serotype 09 putative O-ant... 40 9.7
38gb|AF498400.1| Pseudomonas aeruginosa serotype 01 putative O-ant... 40 9.7
39dbj|AK095305.1| Homo sapiens cDNA FLJ37986 fis, clone CTONG20111... 40 9.7
40gb|AC090479.6| Mus Musculus Chromosome 18 RP23-363E23, complete ... 40 9.7
41gb|AC092361.3| Homo sapiens chromosome 5 clone RP11-356O21, comp... 40 9.7
42emb|BX323090.7| Zebrafish DNA sequence from clone CH211-274B7 in... 40 9.7
43gb|AC138828.2| Homo sapiens chromosome 5 clone RP11-1156J4, comp... 40 9.7
44gb|AF540990.1| Pseudomonas aeruginosa isolate 1-60 O-antigen bio... 40 9.7
45gb|AC073244.13| Homo sapiens 3 BAC RP11-207J1 (Roswell Park Canc... 40 9.7
46gb|AC138854.2| Homo sapiens chromosome 5 clone RP11-1330D14, com... 40 9.7
47emb|CT009662.23| Mouse DNA sequence from clone CH29-511O15 on ch... 40 9.7
48gb|AC115894.6| Mus musculus chromosome 18, clone RP24-443A14, co... 40 9.7
49gb|AC171197.1| Mus musculus BAC clone RP23-216J7 from chromosome... 40 9.7 
>gb|BT009604.1| Triticum aestivum clone wre1n.pk0082.c6:fis, full insert mRNA
            sequence
          Length = 1676

 Score =  777 bits (392), Expect = 0.0
 Identities = 484/514 (94%), Gaps = 8/514 (1%)
 Strand = Plus / Minus

                                                                        
Query: 199  taagatcccaaagttgtcccagtgtagaggagttaatgaccaaaattgtatgcatcttat 258
            ||||||||||||||| |||||  |||||||||||||| ||||||||||||||||||||||
Sbjct: 1441 taagatcccaaagttatcccacagtagaggagttaataaccaaaattgtatgcatcttat 1382

                                                                        
Query: 259  ttttcttgtgaaaaatgtgaccacagatgatcttgaagaaaaa---atatgaacagttaa 315
            |||||||||||||||||||||||     | ||||| |||||||   ||||||||||||||
Sbjct: 1381 ttttcttgtgaaaaatgtgacca-----ggtcttggagaaaaataaatatgaacagttaa 1327

                                                                        
Query: 316  cttgttcagaagcctcctcatttcgagctgaacttgccacgcactgtctcataggctggt 375
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1326 cttgttcagaagcctcctcatttcgagctgaacttgccacgcactgtctcgtaggctggt 1267

                                                                        
Query: 376  acgctgagaacgtttccatgagatgccattgtcaatggtgatgagatgatcttcgcagca 435
            ||  ||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 1266 acattgagaacatttccatgagatgccattgtcaatggtgacgagatgatcttctcagca 1207

                                                                        
Query: 436  acagttgatacatctgccagagttatagcatcaacagcctttagaagctgctccacaggt 495
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1206 acagttgatacatctgccagagttatagcatcaacagccttaagaagctgctccacaggt 1147

                                                                        
Query: 496  ttcctttcaccaaatgccaatgcttggcgccccatgtcttcagttgttgatgcctttgat 555
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1146 ttcctttcaccaaatgccaatgcttggcgccccatgtcttcagttgttgatgcctttgat 1087

                                                                        
Query: 556  tccaggttcctcaagataactgattttgcagatgctttagcacggtccagttgggtttgg 615
            ||||||||| |||||||| ||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 1086 tccaggttcttcaagatagctgattttgcaaatgctttagcacgttccagttgggtttgg 1027

                                                                        
Query: 616  tcaacttgaccaggggtcgcgagggaagtgagttctctggctgccaagtcaataacttta 675
            |||||||||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct: 1026 tcaacttgaccaggagtagcaagggaagtgagttctctggctgccaagtcaataacttta 967

                                              
Query: 676  ggaacaaatgctgcatcagtcgatgcatgaattc 709
            |||||||||||||| |||||||||| ||||||||
Sbjct: 966  ggaacaaatgctgcttcagtcgatgtatgaattc 933



 Score =  190 bits (96), Expect = 4e-45
 Identities = 167/188 (88%), Gaps = 6/188 (3%)
 Strand = Plus / Minus

                                                                        
Query: 1    attgaatctttattntttcct-tgccccagcactagtttcaacgactttaacc--aaaaa 57
            ||||||||||||||  || || ||||||  |||| |||||| |||||||||||  |||||
Sbjct: 1647 attgaatctttattcatttctgtgccccgacactggtttcatcgactttaacccaaaaaa 1588

                                                                        
Query: 58   gtggaggaacattttgtacacccttccggactgccaccgaaagagggccacccatgcatg 117
            ||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||
Sbjct: 1587 gtggaggaacattttgtacacccttccggactgccactgaaagagggccacccatatatg 1528

                                                                        
Query: 118  atttcactgaatttacagtaacatatctcaagagaacaacatcacaccaccaaactcagg 177
            |||||||||||||||||| ||||||||||  |||   |||||||||||| |||| |||||
Sbjct: 1527 atttcactgaatttacaggaacatatctcttgag---aacatcacaccaacaaattcagg 1471

                    
Query: 178  tggataca 185
            ||||||||
Sbjct: 1470 tggataca 1463
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>gb|AY011123.1| Dactylis glomerata mitochondrial processing peptidase alpha-chain
            precursor (DGMPP) mRNA, complete cds
          Length = 1799

 Score =  414 bits (209), Expect = e-112
 Identities = 384/441 (87%), Gaps = 1/441 (0%)
 Strand = Plus / Minus

                                                                        
Query: 270  aaaatgtgaccacagatgatcttgaa-gaaaaaatatgaacagttaacttgttcagaagc 328
            |||||||||||| | ||||||||| | ||||| |||| |||||||| ||||| |||| ||
Sbjct: 1659 aaaatgtgaccagaaatgatcttggatgaaaatatatcaacagttatcttgtccagacgc 1600

                                                                        
Query: 329  ctcctcatttcgagctgaacttgccacgcactgtctcataggctggtacgctgagaacgt 388
            || |||||||||||||||||||||| ||||||||||| || ||||||||| |||||||||
Sbjct: 1599 ctactcatttcgagctgaacttgccgcgcactgtctcgtaagctggtacgttgagaacgt 1540

                                                                        
Query: 389  ttccatgagatgccattgtcaatggtgatgagatgatcttcgcagcaacagttgatacat 448
             |||||| ||||||||||||||||||||||||||||| ||| |||| | || ||||||||
Sbjct: 1539 ctccatgggatgccattgtcaatggtgatgagatgattttctcagcgagagctgatacat 1480

                                                                        
Query: 449  ctgccagagttatagcatcaacagcctttagaagctgctccacaggtttcctttcaccaa 508
            ||  |||||  | | |||| |||  ||| ||||| ||||| |||||||||||||||||||
Sbjct: 1479 ctttcagagaaacaccatcgacaatcttaagaagttgctcaacaggtttcctttcaccaa 1420

                                                                        
Query: 509  atgccaatgcttggcgccccatgtcttcagttgttgatgcctttgattccaggttcctca 568
            |||||||  ||||||||||||| |||||||||| ||||||||||||||||||| |   ||
Sbjct: 1419 atgccaaaacttggcgccccatatcttcagttgctgatgcctttgattccaggcttgcca 1360

                                                                        
Query: 569  agataactgattttgcagatgctttagcacggtccagttgggtttggtcaacttgaccag 628
            ||||  ||||||| ||  ||||||||||||| || |||||||| ||||||||||||||||
Sbjct: 1359 agattgctgatttagctaatgctttagcacgatctagttgggtctggtcaacttgaccag 1300

                                                                        
Query: 629  gggtcgcgagggaagtgagttctctggctgccaagtcaataactttaggaacaaatgctg 688
            | || ||||| |||||||||||||||||||| ||||||||| |||||||| |||||||||
Sbjct: 1299 gagttgcgagtgaagtgagttctctggctgctaagtcaatagctttaggagcaaatgctg 1240

                                 
Query: 689  catcagtcgatgcatgaattc 709
            ||||||| |||| ||||||||
Sbjct: 1239 catcagtagatgtatgaattc 1219
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>dbj|AK101856.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069O10, full
            insert sequence
          Length = 2012

 Score =  297 bits (150), Expect = 3e-77
 Identities = 321/378 (84%)
 Strand = Plus / Minus

                                                                        
Query: 332  ctcatttcgagctgaacttgccacgcactgtctcataggctggtacgctgagaacgtttc 391
            ||||||||||||  ||||||||||  ||||  ||||| | ||| ||| | ||||||||||
Sbjct: 1650 ctcatttcgagcgaaacttgccactgactgaatcataagttggcacgttcagaacgtttc 1591

                                                                        
Query: 392  catgagatgccattgtcaatggtgatgagatgatcttcgcagcaacagttgatacatctg 451
            |||||||||||||||||||||||||||| ||||| ||| ||||||  | ||  |  ||| 
Sbjct: 1590 catgagatgccattgtcaatggtgatgatatgattttctcagcaagggctgtaatgtctt 1531

                                                                        
Query: 452  ccagagttatagcatcaacagcctttagaagctgctccacaggtttcctttcaccaaatg 511
             |||||| | | ||||||||||||| ||||| ||||| |||||||||||||||||||| |
Sbjct: 1530 tcagagtaacaccatcaacagccttgagaaggtgctcaacaggtttcctttcaccaaagg 1471

                                                                        
Query: 512  ccaatgcttggcgccccatgtcttcagttgttgatgcctttgattccaggttcctcaaga 571
            |||||  ||| || |||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 1470 ccaatatttgccgtcccatgtcttcagttgctgatgcctttgattccaggttcatcaaga 1411

                                                                        
Query: 572  taactgattttgcagatgctttagcacggtccagttgggtttggtcaacttgaccagggg 631
            |  ||||||| || |  |||||||||||||| ||||| |||||||||||||  ||||| |
Sbjct: 1410 ttgctgatttagctgtcgctttagcacggtcaagttgagtttggtcaacttttccaggag 1351

                                                                        
Query: 632  tcgcgagggaagtgagttctctggctgccaagtcaataactttaggaacaaatgctgcat 691
            | || || |||||||| ||||||| ||||||||||||| | |||||||| ||||||||||
Sbjct: 1350 tggcaagagaagtgagctctctggttgccaagtcaatagccttaggaacgaatgctgcat 1291

                              
Query: 692  cagtcgatgcatgaattc 709
            |||| |||| ||||||||
Sbjct: 1290 cagtagatgtatgaattc 1273
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>dbj|AK071930.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073N24, full
            insert sequence
          Length = 1991

 Score =  297 bits (150), Expect = 3e-77
 Identities = 321/378 (84%)
 Strand = Plus / Minus

                                                                        
Query: 332  ctcatttcgagctgaacttgccacgcactgtctcataggctggtacgctgagaacgtttc 391
            ||||||||||||  ||||||||||  ||||  ||||| | ||| ||| | ||||||||||
Sbjct: 1644 ctcatttcgagcgaaacttgccactgactgaatcataagttggcacgttcagaacgtttc 1585

                                                                        
Query: 392  catgagatgccattgtcaatggtgatgagatgatcttcgcagcaacagttgatacatctg 451
            |||||||||||||||||||||||||||| ||||| ||| ||||||  | ||  |  ||| 
Sbjct: 1584 catgagatgccattgtcaatggtgatgatatgattttctcagcaagggctgtaatgtctt 1525

                                                                        
Query: 452  ccagagttatagcatcaacagcctttagaagctgctccacaggtttcctttcaccaaatg 511
             |||||| | | ||||||||||||| ||||| ||||| |||||||||||||||||||| |
Sbjct: 1524 tcagagtaacaccatcaacagccttgagaaggtgctcaacaggtttcctttcaccaaagg 1465

                                                                        
Query: 512  ccaatgcttggcgccccatgtcttcagttgttgatgcctttgattccaggttcctcaaga 571
            |||||  ||| || |||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 1464 ccaatatttgccgtcccatgtcttcagttgctgatgcctttgattccaggttcatcaaga 1405

                                                                        
Query: 572  taactgattttgcagatgctttagcacggtccagttgggtttggtcaacttgaccagggg 631
            |  ||||||| || |  |||||||||||||| ||||| |||||||||||||  ||||| |
Sbjct: 1404 ttgctgatttagctgtcgctttagcacggtcaagttgagtttggtcaacttttccaggag 1345

                                                                        
Query: 632  tcgcgagggaagtgagttctctggctgccaagtcaataactttaggaacaaatgctgcat 691
            | || || |||||||| ||||||| ||||||||||||| | |||||||| ||||||||||
Sbjct: 1344 tggcaagagaagtgagctctctggttgccaagtcaatagccttaggaacgaatgctgcat 1285

                              
Query: 692  cagtcgatgcatgaattc 709
            |||| |||| ||||||||
Sbjct: 1284 cagtagatgtatgaattc 1267
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>ref|NM_189667.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2478

 Score =  278 bits (140), Expect = 2e-71
 Identities = 278/324 (85%)
 Strand = Plus / Minus

                                                                        
Query: 386  cgtttccatgagatgccattgtcaatggtgatgagatgatcttcgcagcaacagttgata 445
            |||||||||||||||||||||||||||||||||| ||||| ||| ||||||  | ||  |
Sbjct: 2143 cgtttccatgagatgccattgtcaatggtgatgatatgattttctcagcaagggctgtaa 2084

                                                                        
Query: 446  catctgccagagttatagcatcaacagcctttagaagctgctccacaggtttcctttcac 505
              |||  |||||| | | ||||||||||||| ||||| ||||| ||||||||||||||||
Sbjct: 2083 tgtctttcagagtaacaccatcaacagccttgagaaggtgctcaacaggtttcctttcac 2024

                                                                        
Query: 506  caaatgccaatgcttggcgccccatgtcttcagttgttgatgcctttgattccaggttcc 565
            |||| ||||||  ||| || |||||||||||||||| |||||||||||||||||||||| 
Sbjct: 2023 caaaggccaatatttgccgtcccatgtcttcagttgctgatgcctttgattccaggttca 1964

                                                                        
Query: 566  tcaagataactgattttgcagatgctttagcacggtccagttgggtttggtcaacttgac 625
            |||||||  ||||||| || |  |||||||||||||| ||||| |||||||||||||  |
Sbjct: 1963 tcaagattgctgatttagctgtcgctttagcacggtcaagttgagtttggtcaacttttc 1904

                                                                        
Query: 626  caggggtcgcgagggaagtgagttctctggctgccaagtcaataactttaggaacaaatg 685
            |||| || || || |||||||| ||||||| ||||||||||||| | |||||||| ||||
Sbjct: 1903 caggagtggcaagagaagtgagctctctggttgccaagtcaatagccttaggaacgaatg 1844

                                    
Query: 686  ctgcatcagtcgatgcatgaattc 709
            |||||||||| |||| ||||||||
Sbjct: 1843 ctgcatcagtagatgtatgaattc 1820
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>gb|AY108609.1| Zea mays PCO088346 mRNA sequence
          Length = 2030

 Score =  139 bits (70), Expect = 1e-29
 Identities = 151/178 (84%)
 Strand = Plus / Minus

                                                                        
Query: 382  agaacgtttccatgagatgccattgtcaatggtgatgagatgatcttcgcagcaacagtt 441
            |||||||||||||||||||||||||||||||| ||||| ||||||||  |||||||||  
Sbjct: 1616 agaacgtttccatgagatgccattgtcaatggggatgaaatgatcttttcagcaacagac 1557

                                                                        
Query: 442  gatacatctgccagagttatagcatcaacagcctttagaagctgctccacaggtttcctt 501
            | || ||||  || ||| | | |||| |||||||| ||||| |||||  |||||||||||
Sbjct: 1556 gttatatctttcatagtaacaccatctacagccttgagaaggtgctcagcaggtttcctt 1497

                                                                      
Query: 502  tcaccaaatgccaatgcttggcgccccatgtcttcagttgttgatgcctttgattcca 559
            ||||||||||||||  |||||||||||||||| || |||   ||||||| ||||||||
Sbjct: 1496 tcaccaaatgccaaaacttggcgccccatgtcctctgttagcgatgcctgtgattcca 1439



 Score =  129 bits (65), Expect = 1e-26
 Identities = 107/121 (88%)
 Strand = Plus / Minus

                                                                        
Query: 589  gctttagcacggtccagttgggtttggtcaacttgaccaggggtcgcgagggaagtgagt 648
            |||||||| |||||||||||| ||||||||||||| ||||| || || ||||||||||| 
Sbjct: 1409 gctttagcgcggtccagttggctttggtcaacttgtccaggagttgcaagggaagtgagc 1350

                                                                        
Query: 649  tctctggctgccaagtcaataactttaggaacaaatgctgcatcagtcgatgcatgaatt 708
            ||||||||||| | ||||||| ||||||||||||||| ||||||||| |||| ||| |||
Sbjct: 1349 tctctggctgctaggtcaatagctttaggaacaaatgatgcatcagtagatgtatggatt 1290

             
Query: 709  c 709
            |
Sbjct: 1289 c 1289
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 97/115 (84%)
 Strand = Plus / Minus

                                                                           
Query: 386     cgtttccatgagatgccattgtcaatggtgatgagatgatcttcgcagcaacagttgata 445
               |||||||||||||||||||||||||||||||||| ||||| ||| ||||||  | ||  |
Sbjct: 4895375 cgtttccatgagatgccattgtcaatggtgatgatatgattttctcagcaagggctgtaa 4895316

                                                                      
Query: 446     catctgccagagttatagcatcaacagcctttagaagctgctccacaggtttcct 500
                 |||  |||||| | | ||||||||||||| ||||| ||||| |||||||||||
Sbjct: 4895315 tgtctttcagagtaacaccatcaacagccttgagaaggtgctcaacaggtttcct 4895261



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 65/74 (87%)
 Strand = Plus / Minus

                                                                           
Query: 548     cctttgattccaggttcctcaagataactgattttgcagatgctttagcacggtccagtt 607
               ||||||||||||||||| |||||||  ||||||| || |  |||||||||||||| ||||
Sbjct: 4894248 cctttgattccaggttcatcaagattgctgatttagctgtcgctttagcacggtcaagtt 4894189

                             
Query: 608     gggtttggtcaact 621
               | ||||||||||||
Sbjct: 4894188 gagtttggtcaact 4894175



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                    
Query: 640     gaagtgagttctctggctgccaagtcaataactttaggaacaaatgctgcatc 692
               |||||||| ||||||| ||||||||||||| | |||||||| |||||||||||
Sbjct: 4894079 gaagtgagctctctggttgccaagtcaatagccttaggaacgaatgctgcatc 4894027



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                    
Query: 498     cctttcaccaaatgccaatgcttggcgccccatgtcttcagttgttgatgcct 550
               |||||||||||| ||||||  ||| || |||||||||||||||| ||||||||
Sbjct: 4894375 cctttcaccaaaggccaatatttgccgtcccatgtcttcagttgctgatgcct 4894323
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>dbj|AP002743.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0710E05
          Length = 179714

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 97/115 (84%)
 Strand = Plus / Minus

                                                                          
Query: 386    cgtttccatgagatgccattgtcaatggtgatgagatgatcttcgcagcaacagttgata 445
              |||||||||||||||||||||||||||||||||| ||||| ||| ||||||  | ||  |
Sbjct: 140024 cgtttccatgagatgccattgtcaatggtgatgatatgattttctcagcaagggctgtaa 139965

                                                                     
Query: 446    catctgccagagttatagcatcaacagcctttagaagctgctccacaggtttcct 500
                |||  |||||| | | ||||||||||||| ||||| ||||| |||||||||||
Sbjct: 139964 tgtctttcagagtaacaccatcaacagccttgagaaggtgctcaacaggtttcct 139910



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 65/74 (87%)
 Strand = Plus / Minus

                                                                          
Query: 548    cctttgattccaggttcctcaagataactgattttgcagatgctttagcacggtccagtt 607
              ||||||||||||||||| |||||||  ||||||| || |  |||||||||||||| ||||
Sbjct: 138897 cctttgattccaggttcatcaagattgctgatttagctgtcgctttagcacggtcaagtt 138838

                            
Query: 608    gggtttggtcaact 621
              | ||||||||||||
Sbjct: 138837 gagtttggtcaact 138824



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                   
Query: 640    gaagtgagttctctggctgccaagtcaataactttaggaacaaatgctgcatc 692
              |||||||| ||||||| ||||||||||||| | |||||||| |||||||||||
Sbjct: 138728 gaagtgagctctctggttgccaagtcaatagccttaggaacgaatgctgcatc 138676



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                   
Query: 498    cctttcaccaaatgccaatgcttggcgccccatgtcttcagttgttgatgcct 550
              |||||||||||| ||||||  ||| || |||||||||||||||| ||||||||
Sbjct: 139024 cctttcaccaaaggccaatatttgccgtcccatgtcttcagttgctgatgcct 138972
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>gb|AC131455.5| Medicago truncatula clone mth1-42h9, complete sequence
          Length = 96063

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 550  tttgattccaggttcctcaagat 572
            |||||||||||||||||||||||
Sbjct: 9711 tttgattccaggttcctcaagat 9689
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>emb|AL049820.23|HSDJ137K2 Human DNA sequence from clone RP1-137K2 on chromosome 6q25.1-25.3
              Contains part of the gene for BRG1-binding protein ELD/OSA1
              (p250R KIAA1235) (FLJ00253 FLJ22292), a novel gene and two
              CpG islands, complete sequence
          Length = 187507

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 113    gcatgatttcactgaatttacag 135
              |||||||||||||||||||||||
Sbjct: 161069 gcatgatttcactgaatttacag 161091
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>gb|AC102910.13| Mus musculus chromosome 15, clone RP24-280E23, complete sequence
          Length = 179719

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 229   agttaatgaccaaaattgtat 249
             |||||||||||||||||||||
Sbjct: 61917 agttaatgaccaaaattgtat 61937
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>gb|AC110209.11| Mus musculus chromosome 12, clone RP23-279O18, complete sequence
          Length = 177587

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 449   ctgccagagttatagcatcaa 469
             |||||||||||||||||||||
Sbjct: 20594 ctgccagagttatagcatcaa 20614
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>ref|XM_844275.1| PREDICTED: Canis familiaris hypothetical protein LOC607552
           (LOC607552), mRNA
          Length = 879

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 552 tgattccaggttcctcaagat 572
           |||||||||||||||||||||
Sbjct: 243 tgattccaggttcctcaagat 223
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>gb|AC127553.3| Mus musculus BAC clone RP24-553F11 from chromosome 5, complete sequence
          Length = 159693

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 639   ggaagtgagttctctggctgccaag 663
             ||||||||| |||||||||||||||
Sbjct: 48264 ggaagtgagctctctggctgccaag 48240
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>ref|XM_758790.1| Theileria parva strain Muguga chromosome 4 hypothetical protein
           (TP04_0248) partial mRNA
          Length = 1698

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 152 aacaacatcacaccaccaaactcag 176
           |||||| ||||||||||||||||||
Sbjct: 809 aacaacttcacaccaccaaactcag 785
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>gb|AC080073.6| Homo sapiens BAC clone RP11-321C7 from 7, complete sequence
          Length = 57075

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 412   ggtgatgagatgatcttcgcagcaa 436
             ||||||||||||||||| |||||||
Sbjct: 35226 ggtgatgagatgatctttgcagcaa 35202
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>emb|AL645617.9| Human DNA sequence from clone RP11-796C22 on chromosome 10 Contains
             part of the UPF2 gene for UPF2 regulator of nonsense
             transcripts homolog (yeast) (FLJ38872), complete sequence
          Length = 76287

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 412   ggtgatgagatgatcttcgcagcaa 436
             |||||||||||||||| ||||||||
Sbjct: 58397 ggtgatgagatgatctgcgcagcaa 58421
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>emb|AL022144.1|HS35C21 Human DNA sequence from clone RP1-35C21 on chromosome 1q23-24, complete
             sequence
          Length = 91017

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 477   tagaagctgctccacaggttt 497
             |||||||||||||||||||||
Sbjct: 64202 tagaagctgctccacaggttt 64182
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>gb|AC104109.3| Homo sapiens chromosome 5 clone CTD-2410N18, complete sequence
          Length = 164072

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 653   tggctgccaagtcaataactt 673
             |||||||||||||||||||||
Sbjct: 47486 tggctgccaagtcaataactt 47506
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>ref|NM_065960.2| Caenorhabditis elegans T12A2.8 (T12A2.8) mRNA, complete cds
          Length = 2544

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 261 ttcttgtgaaaaatgtgacca 281
           |||||||||||||||||||||
Sbjct: 268 ttcttgtgaaaaatgtgacca 248
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>gb|AC114763.6| Homo sapiens BAC clone RP11-369K2 from 2, complete sequence
          Length = 87248

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 258   tttttcttgtgaaaaatgtga 278
             |||||||||||||||||||||
Sbjct: 40734 tttttcttgtgaaaaatgtga 40714
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>emb|BX469897.6| Zebrafish DNA sequence from clone CH211-39F22 in linkage group 4,
             complete sequence
          Length = 186500

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 501   ttcaccaaatgccaatgcttg 521
             |||||||||||||||||||||
Sbjct: 35705 ttcaccaaatgccaatgcttg 35685
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>emb|CT009504.11| Mouse DNA sequence from clone RP23-149M9 on chromosome 12, complete
            sequence
          Length = 190345

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 449  ctgccagagttatagcatcaa 469
            |||||||||||||||||||||
Sbjct: 2934 ctgccagagttatagcatcaa 2914
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>gb|AC110037.13| Mus musculus chromosome 5, clone RP23-257E17, complete sequence
          Length = 177428

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 639   ggaagtgagttctctggctgccaag 663
             ||||||||| |||||||||||||||
Sbjct: 40439 ggaagtgagctctctggctgccaag 40463
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>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome
          Length = 5224283

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 570     gataactgattttgcagatgcttta 594
               |||||||||||| ||||||||||||
Sbjct: 3318142 gataactgatttcgcagatgcttta 3318118
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>gb|AC131190.3| Mus musculus BAC clone RP24-332E15 from chromosome 5, complete sequence
          Length = 176925

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 249   tgcatcttatttttcttgtg 268
             ||||||||||||||||||||
Sbjct: 96818 tgcatcttatttttcttgtg 96799
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>gb|AC165293.2| Mus musculus BAC clone RP23-268A5 from chromosome 12, complete sequence
          Length = 179330

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 605   gttgggtttggtcaacttga 624
             ||||||||||||||||||||
Sbjct: 93770 gttgggtttggtcaacttga 93789
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>gb|AC183773.2| Pan troglodytes BAC clone CH251-2N7 from chromosome 7, complete sequence
          Length = 168126

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 412    ggtgatgagatgatcttcgcagca 435
              ||||||||||||||||| ||||||
Sbjct: 123750 ggtgatgagatgatctttgcagca 123773
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>emb|Z81503.1|CEF14F7 Caenorhabditis elegans Cosmid F14F7, complete sequence
          Length = 25468

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 239  caaaattgtatgcatcttat 258
            ||||||||||||||||||||
Sbjct: 8625 caaaattgtatgcatcttat 8606
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>gb|AC122496.2| Mus musculus BAC clone RP24-400K16 from 5, complete sequence
          Length = 180081

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 650   ctctggctgccaagtcaataactt 673
             |||||||||||||||| |||||||
Sbjct: 33190 ctctggctgccaagtctataactt 33167
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>gb|AE004284.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 192
            of 251 of the complete chromosome
          Length = 10039

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 649  tctctggctgccaagtcaat 668
            ||||||||||||||||||||
Sbjct: 8611 tctctggctgccaagtcaat 8592
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>gb|AF101305.2| Caenorhabditis elegans cosmid C04F5, complete sequence
          Length = 40766

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 233   aatgaccaaaattgtatgca 252
             ||||||||||||||||||||
Sbjct: 32199 aatgaccaaaattgtatgca 32218
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>gb|AE014830.1| Plasmodium falciparum 3D7 chromosome 10 section 2 of 7 of the complete
              sequence
          Length = 250029

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 230    gttaatgaccaaaattgtat 249
              ||||||||||||||||||||
Sbjct: 246428 gttaatgaccaaaattgtat 246409
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>emb|AL121908.16|HSDJ719C8 Human DNA sequence from clone RP4-719C8 on chromosome 20 Contains three
              different 5' ends of the C20orf101 gene and three CpG
              islands, complete sequence
          Length = 150985

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 283    agatgatcttgaagaaaaaa 302
              ||||||||||||||||||||
Sbjct: 139494 agatgatcttgaagaaaaaa 139475
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>emb|CR392344.7| Zebrafish DNA sequence from clone CH211-239D11 in linkage group 20
             Contains the 3' end of the gene for a novel protein
             similar to vertebrate X-ray repair complementing defective
             repair in Chinese hamster cells 5 (double-strand-break
             rejoining; Ku autoantigen, 80kDa) (XRCC5), the gene for a
             novel protein similar to vertebrate SWI/SNF related matrix
             associated actin dependent regulator of chromatin
             subfamily a-like 1 (SMARCAL1), two novel genes and three
             CpG islands, complete sequence
          Length = 150882

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 160   cacaccaccaaactcaggtg 179
             ||||||||||||||||||||
Sbjct: 20138 cacaccaccaaactcaggtg 20157
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>gb|AC165442.1| Mus musculus BAC clone RP23-164P21 from chromosome 10, complete sequence
          Length = 209583

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 606    ttgggtttggtcaacttgac 625
              ||||||||||||||||||||
Sbjct: 183380 ttgggtttggtcaacttgac 183361
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>gb|AF498420.1| Pseudomonas aeruginosa serotype 09 putative O-antigen biosynthesis gene
             cluster, partial sequence
          Length = 16349

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 397   gatgccattgtcaatggtga 416
             ||||||||||||||||||||
Sbjct: 13177 gatgccattgtcaatggtga 13196
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>gb|AF498400.1| Pseudomonas aeruginosa serotype 01 putative O-antigen biosynthesis gene
             cluster, partial sequence
          Length = 17453

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 397   gatgccattgtcaatggtga 416
             ||||||||||||||||||||
Sbjct: 14281 gatgccattgtcaatggtga 14300
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>dbj|AK095305.1| Homo sapiens cDNA FLJ37986 fis, clone CTONG2011188, highly similar
           to EPHRIN TYPE-B RECEPTOR 1 PRECURSOR (EC 2.7.1.112)
          Length = 2737

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 314 aacttgttcagaagcctcct 333
           ||||||||||||||||||||
Sbjct: 187 aacttgttcagaagcctcct 168
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>gb|AC090479.6| Mus Musculus Chromosome 18 RP23-363E23, complete sequence
          Length = 199409

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 118    atttcactgaatttacagta 137
              ||||||||||||||||||||
Sbjct: 177713 atttcactgaatttacagta 177694
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>gb|AC092361.3| Homo sapiens chromosome 5 clone RP11-356O21, complete sequence
          Length = 166133

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 293   gaagaaaaaatatgaacagt 312
             ||||||||||||||||||||
Sbjct: 45416 gaagaaaaaatatgaacagt 45435
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>emb|BX323090.7| Zebrafish DNA sequence from clone CH211-274B7 in linkage group 1,
              complete sequence
          Length = 166353

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 249    tgcatcttatttttcttgtgaaaa 272
              |||||||||||||| |||||||||
Sbjct: 150147 tgcatcttattttttttgtgaaaa 150124
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>gb|AC138828.2| Homo sapiens chromosome 5 clone RP11-1156J4, complete sequence
          Length = 184142

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 293   gaagaaaaaatatgaacagt 312
             ||||||||||||||||||||
Sbjct: 89621 gaagaaaaaatatgaacagt 89640
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>gb|AF540990.1| Pseudomonas aeruginosa isolate 1-60 O-antigen biosynthetic locus,
             partial sequence
          Length = 19104

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 397   gatgccattgtcaatggtga 416
             ||||||||||||||||||||
Sbjct: 15929 gatgccattgtcaatggtga 15948
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>gb|AC073244.13| Homo sapiens 3 BAC RP11-207J1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 109999

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 314   aacttgttcagaagcctcct 333
             ||||||||||||||||||||
Sbjct: 91747 aacttgttcagaagcctcct 91766
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>gb|AC138854.2| Homo sapiens chromosome 5 clone RP11-1330D14, complete sequence
          Length = 203368

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 293   gaagaaaaaatatgaacagt 312
             ||||||||||||||||||||
Sbjct: 80706 gaagaaaaaatatgaacagt 80725
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>emb|CT009662.23| Mouse DNA sequence from clone CH29-511O15 on chromosome 17, complete
              sequence
          Length = 231197

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 49     aaccaaaaagtggaggaaca 68
              ||||||||||||||||||||
Sbjct: 208673 aaccaaaaagtggaggaaca 208692
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>gb|AC115894.6| Mus musculus chromosome 18, clone RP24-443A14, complete sequence
          Length = 185242

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 118    atttcactgaatttacagta 137
              ||||||||||||||||||||
Sbjct: 128212 atttcactgaatttacagta 128231
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>gb|AC171197.1| Mus musculus BAC clone RP23-216J7 from chromosome 5, complete
            sequence
          Length = 211677

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 249  tgcatcttatttttcttgtg 268
            ||||||||||||||||||||
Sbjct: 9841 tgcatcttatttttcttgtg 9822


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,049,478
Number of Sequences: 3902068
Number of extensions: 7049478
Number of successful extensions: 140903
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 140677
Number of HSP's gapped (non-prelim): 221
length of query: 709
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 686
effective length of database: 17,143,297,704
effective search space: 11760302224944
effective search space used: 11760302224944
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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