ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags23g03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_483851.1| Oryza sativa (japonica cultivar-group), mRNA 450 e-123
2dbj|AK100851.1| Oryza sativa (japonica cultivar-group) cDNA clon... 450 e-123
3gb|AY105269.1| Zea mays PCO145555 mRNA sequence 363 5e-97
4dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 101 3e-18
5dbj|AP005411.3| Oryza sativa (japonica cultivar-group) genomic D... 101 3e-18
6emb|AL591791.1|SME591791 Sinorhizobium meliloti 1021 complete ch... 44 0.55
7gb|AF365879.1| Vitis vinifera clone GLP1-12 resistance protein g... 44 0.55
8dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.55
9dbj|AP005510.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.55
10dbj|AP004018.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.55
11gb|AC104881.9| Mus musculus chromosome 18, clone RP23-244A24, co... 42 2.2
12emb|Z36948.1|CED2089 Caenorhabditis elegans Cosmid D2089, comple... 42 2.2
13emb|AL583808.6| Human DNA sequence from clone RP11-262K1 on chro... 42 2.2
14gb|AC092931.8| Homo sapiens 3 BAC RP11-131O20 (Roswell Park Canc... 42 2.2
15dbj|AB183488.1| Oryzias latipes DNA, MHC class I region 42 2.2
16gb|AC093795.3| Homo sapiens BAC clone RP11-299P3 from 4, complet... 42 2.2
17gb|AC113451.11| Mus musculus chromosome 18, clone RP24-402J9, co... 40 8.6
18gb|AF111103.1|MMHC322F16 Mouse major histocompatibility complex ... 40 8.6
19gb|AC166570.2| Mus musculus chromosome 18, clone RP24-74O22, com... 40 8.6
20gb|AC025794.9| Mus musculus chromosome 19, clone RP23-62O7, comp... 40 8.6
21gb|AC128672.4| Mus musculus BAC clone RP23-136O15 from chromosom... 40 8.6
22gb|AC084390.1| Mus musculus BAC clone RP23-285H9 from 1, complet... 40 8.6
23gb|AY346108.1|AH010782S01 Cricetulus griseus adaptor protein co... 40 8.6
24gb|AC116458.9| Mus musculus chromosome 16, clone RP23-11L14, com... 40 8.6
25emb|AL138708.17| Human DNA sequence from clone RP11-432E15 on ch... 40 8.6
26emb|AL137140.12| Human DNA sequence from clone RP11-137M6 on chr... 40 8.6
27emb|AL606993.2|OSJN00121 Oryza sativa genomic DNA, chromosome 4,... 40 8.6
28gb|AC025182.4| Homo sapiens chromosome 5 clone CTD-2192A1, compl... 40 8.6
29gb|AF111102.2|MMHC214O16 Mus musculus strain 129/SvJ chromosome ... 40 8.6
30dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
31dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
32gb|AC104052.9| Homo sapiens chromosome 8, clone CTD-2358M3, comp... 40 8.6
33gb|AC087216.1|AC087216 Mus musculus strain 129svj chromosome 17 ... 40 8.6
34gb|AC124944.8| Homo sapiens 3 BAC RP11-352G9 (Roswell Park Cance... 40 8.6
35gb|AC016562.7| Homo sapiens chromosome 5 clone CTC-484A9, comple... 40 8.6
36dbj|AK024904.1| Homo sapiens cDNA: FLJ21251 fis, clone COL01259 40 8.6
37dbj|AK059672.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.6
38gb|U40485.1|PSU40485 Pseudomonas sp. KFCC10818 alkaline-resistan... 40 8.6
39dbj|AP001000.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 8.6
40gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.6
41emb|AL731741.5|CNS08C7Q Oryza sativa chromosome 12, . BAC OJ1298... 40 8.6
42emb|CR974473.23| Mouse DNA sequence from clone RP23-38P5 on chro... 40 8.6
43gb|AC002525.1|AC002525 Human PAC clone 257C22A from 13q12-q13, c... 40 8.6
44emb|CR974466.14| Mouse DNA sequence from clone RP23-331E12 on ch... 40 8.6
45emb|CT025573.9| Mouse DNA sequence from clone RP24-274P18 on chr... 40 8.6
46dbj|AB209338.1| Homo sapiens mRNA for Hypothetical protein FLJ16... 40 8.6
47emb|AL928638.7| Mouse DNA sequence from clone RP23-377E1 on chro... 40 8.6
48emb|AL591882.12| Mouse DNA sequence from clone RP23-53L16 on chr... 40 8.6
49gb|DQ062814.1| Hippoglossus hippoglossus growth hormone receptor... 40 8.6 
>ref|XM_483851.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 830

 Score =  450 bits (227), Expect = e-123
 Identities = 401/457 (87%), Gaps = 4/457 (0%)
 Strand = Plus / Minus

                                                                       
Query: 169 ggcaatggatcttgctgctttcaggttcagaaacactgcccagcatgatgcaacggagct 228
           ||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||  ||||
Sbjct: 631 ggcaatggaccttgctgctttcaggttcagaaatactgcccagcacgatgcaacaaagct 572

                                                                       
Query: 229 gccgaaaagaactcggagctggagtggcatgtactcgtagttgatccagctaactattgg 288
           |  ||||||||||||||||||||| |||||||| || ||||| ||||| ||||| |||||
Sbjct: 571 gtggaaaagaactcggagctggagcggcatgtattcatagtttatccaactaacaattgg 512

                                                                       
Query: 289 ccagaacttccaagctgtcaattggatgtttgcaaagtccttcttgaccttgctctttac 348
           ||||||||||||||||||||| ||||    |||  |||| ||||||| ||||||||| ||
Sbjct: 511 ccagaacttccaagctgtcaactggacagatgcgtagtctttcttgagcttgctcttcac 452

                                                                       
Query: 349 ttgcccaaatggcctcccttcaactatcagaccatagtacatcatgaacatcatattgtt 408
           ||| | ||| || ||||||||||| | |||||||||||||||||| ||||||||||||||
Sbjct: 451 ttgactaaaaggtctcccttcaaccaccagaccatagtacatcataaacatcatattgtt 392

                                                                       
Query: 409 ccatggtgatacagttagctgctccactatgaccttcttggctgtagtctcttttccttt 468
           |||||||||  ||||||| |||||||||| |||||||||||||||||| |||||||||||
Sbjct: 391 ccatggtgacgcagttagttgctccactaagaccttcttggctgtagtttcttttccttt 332

                                                                       
Query: 469 cttctgtcccttgaaaatcttgtccataagcttgtggaaaaaatgaccgaatggtccctg 528
           |||   ||||||||||| | ||||||| |||||||||| |||||| || || |||||| |
Sbjct: 331 ctt---tcccttgaaaaacctgtccatcagcttgtggagaaaatggccaaacggtccc-g 276

                                                                       
Query: 529 cgtatgcaaatccatagaacattatgaggaggagcctcctgagctggagcttcttgacgc 588
           | || ||||||||||||| ||| |||||||||||||||||| ||||||| ||   |||||
Sbjct: 275 cataagcaaatccatagagcatgatgaggaggagcctcctgcgctggaggttggggacgc 216

                                                
Query: 589 cggagatcttctgggcgacggcgtcgctgcagccggc 625
           |||||||||||||||||| ||||||||||||||||||
Sbjct: 215 cggagatcttctgggcgatggcgtcgctgcagccggc 179
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>dbj|AK100851.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023123J02, full
           insert sequence
          Length = 830

 Score =  450 bits (227), Expect = e-123
 Identities = 401/457 (87%), Gaps = 4/457 (0%)
 Strand = Plus / Minus

                                                                       
Query: 169 ggcaatggatcttgctgctttcaggttcagaaacactgcccagcatgatgcaacggagct 228
           ||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||  ||||
Sbjct: 631 ggcaatggaccttgctgctttcaggttcagaaatactgcccagcacgatgcaacaaagct 572

                                                                       
Query: 229 gccgaaaagaactcggagctggagtggcatgtactcgtagttgatccagctaactattgg 288
           |  ||||||||||||||||||||| |||||||| || ||||| ||||| ||||| |||||
Sbjct: 571 gtggaaaagaactcggagctggagcggcatgtattcatagtttatccaactaacaattgg 512

                                                                       
Query: 289 ccagaacttccaagctgtcaattggatgtttgcaaagtccttcttgaccttgctctttac 348
           ||||||||||||||||||||| ||||    |||  |||| ||||||| ||||||||| ||
Sbjct: 511 ccagaacttccaagctgtcaactggacagatgcgtagtctttcttgagcttgctcttcac 452

                                                                       
Query: 349 ttgcccaaatggcctcccttcaactatcagaccatagtacatcatgaacatcatattgtt 408
           ||| | ||| || ||||||||||| | |||||||||||||||||| ||||||||||||||
Sbjct: 451 ttgactaaaaggtctcccttcaaccaccagaccatagtacatcataaacatcatattgtt 392

                                                                       
Query: 409 ccatggtgatacagttagctgctccactatgaccttcttggctgtagtctcttttccttt 468
           |||||||||  ||||||| |||||||||| |||||||||||||||||| |||||||||||
Sbjct: 391 ccatggtgacgcagttagttgctccactaagaccttcttggctgtagtttcttttccttt 332

                                                                       
Query: 469 cttctgtcccttgaaaatcttgtccataagcttgtggaaaaaatgaccgaatggtccctg 528
           |||   ||||||||||| | ||||||| |||||||||| |||||| || || |||||| |
Sbjct: 331 ctt---tcccttgaaaaacctgtccatcagcttgtggagaaaatggccaaacggtccc-g 276

                                                                       
Query: 529 cgtatgcaaatccatagaacattatgaggaggagcctcctgagctggagcttcttgacgc 588
           | || ||||||||||||| ||| |||||||||||||||||| ||||||| ||   |||||
Sbjct: 275 cataagcaaatccatagagcatgatgaggaggagcctcctgcgctggaggttggggacgc 216

                                                
Query: 589 cggagatcttctgggcgacggcgtcgctgcagccggc 625
           |||||||||||||||||| ||||||||||||||||||
Sbjct: 215 cggagatcttctgggcgatggcgtcgctgcagccggc 179
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>gb|AY105269.1| Zea mays PCO145555 mRNA sequence
          Length = 1014

 Score =  363 bits (183), Expect = 5e-97
 Identities = 387/453 (85%), Gaps = 4/453 (0%)
 Strand = Plus / Minus

                                                                       
Query: 176 gatcttgctgctttcaggttcagaaacactgcccagcatgatgcaacggagctgccgaaa 235
           ||||||||||| || ||||||| |||||| |||||||| || || ||  |||||  ||||
Sbjct: 712 gatcttgctgccttgaggttcaaaaacaccgcccagcaggaggcgacaaagctgtggaaa 653

                                                                       
Query: 236 agaactcggagctggagtggcatgtactcgtagttgatccagctaactattggccagaac 295
           ||||||||||||||||||||||||||||| ||||||||||| || || ||||||||||||
Sbjct: 652 agaactcggagctggagtggcatgtactcatagttgatccaacttacaattggccagaac 593

                                                                       
Query: 296 ttccaagctgtcaattggatgtttgcaaagtccttcttgaccttgctctttacttgccca 355
            |||||||||| | |||||    |||| | |||||||| |||||| |||||||||| |||
Sbjct: 592 ctccaagctgtgagttggacagatgcataatccttcttcaccttgttctttacttgtcca 533

                                                                       
Query: 356 aatggcctcccttcaactatcagaccatagtacatcatgaacatcatattgttccatggt 415
           ||||| ||||||||||| | ||||||| | |||||||| |||||||| ||||||||||| 
Sbjct: 532 aatggtctcccttcaaccaccagaccaaaatacatcataaacatcatgttgttccatgga 473

                                                                       
Query: 416 gatacagttagctgctccactatgaccttcttggctgtagtctcttttcctttcttctgt 475
           ||| | || |||||||| |||| |||||||||||||||||| ||||||||||||||   |
Sbjct: 472 gatgcggtcagctgctctactaagaccttcttggctgtagtttcttttcctttctt---t 416

                                                                       
Query: 476 cccttgaaaatcttgtccataagcttgtggaaaaaatgaccgaatggtccctgcgtatgc 535
           |||||||||| | | ||||| ||||||||||  ||||| || || |||||| ||||||||
Sbjct: 415 cccttgaaaaacctatccatgagcttgtggaggaaatgtccaaacggtccc-gcgtatgc 357

                                                                       
Query: 536 aaatccatagaacattatgaggaggagcctcctgagctggagcttcttgacgccggagat 595
           ||||||||| | |   |||||||||||||||||||| ||||||||    || ||||||||
Sbjct: 356 aaatccatatagcgcgatgaggaggagcctcctgagttggagcttggaaacaccggagat 297

                                            
Query: 596 cttctgggcgacggcgtcgctgcagccggccag 628
           |||||| ||||||||||||||||||||||||||
Sbjct: 296 cttctgagcgacggcgtcgctgcagccggccag 264
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  101 bits (51), Expect = 3e-18
 Identities = 72/79 (91%)
 Strand = Plus / Minus

                                                                            
Query: 365      ccttcaactatcagaccatagtacatcatgaacatcatattgttccatggtgatacagtt 424
                |||||||| | |||||||||||||||||| |||||||||||||||||||||||  |||||
Sbjct: 28382145 ccttcaaccaccagaccatagtacatcataaacatcatattgttccatggtgacgcagtt 28382086

                                   
Query: 425      agctgctccactatgacct 443
                || |||||||||| |||||
Sbjct: 28382085 agttgctccactaagacct 28382067



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 68/74 (91%)
 Strand = Plus / Minus

                                                                            
Query: 552      atgaggaggagcctcctgagctggagcttcttgacgccggagatcttctgggcgacggcg 611
                |||||||||||||||||| ||||||| ||   ||||||||||||||||||||||| ||||
Sbjct: 28381414 atgaggaggagcctcctgcgctggaggttggggacgccggagatcttctgggcgatggcg 28381355

                              
Query: 612      tcgctgcagccggc 625
                ||||||||||||||
Sbjct: 28381354 tcgctgcagccggc 28381341



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 78/89 (87%)
 Strand = Plus / Minus

                                                                            
Query: 208      ccagcatgatgcaacggagctgccgaaaagaactcggagctggagtggcatgtactcgta 267
                |||||| ||||||||  |||||  ||||||||||||||||||||| |||||||| || ||
Sbjct: 28383461 ccagcacgatgcaacaaagctgtggaaaagaactcggagctggagcggcatgtattcata 28383402

                                             
Query: 268      gttgatccagctaactattggccagaact 296
                ||| ||||| ||||| |||||||||||||
Sbjct: 28383401 gtttatccaactaacaattggccagaact 28383373



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 92/106 (86%), Gaps = 4/106 (3%)
 Strand = Plus / Minus

                                                                            
Query: 441      ccttcttggctgtagtctcttttcctttcttctgtcccttgaaaatcttgtccataagct 500
                |||||||||||||||| ||||||||||||||   ||||||||||| | ||||||| ||||
Sbjct: 28381899 ccttcttggctgtagtttcttttcctttctt---tcccttgaaaaacctgtccatcagct 28381843

                                                              
Query: 501      tgtggaaaaaatgaccgaatggtccctgcgtatgcaaatccataga 546
                |||||| |||||| || || |||||| || || |||||||||||||
Sbjct: 28381842 tgtggagaaaatggccaaacggtccc-gcataagcaaatccataga 28381798



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 39/41 (95%)
 Strand = Plus / Minus

                                                         
Query: 169      ggcaatggatcttgctgctttcaggttcagaaacactgccc 209
                ||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 28383603 ggcaatggaccttgctgctttcaggttcagaaatactgccc 28383563
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>dbj|AP005411.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0044E16
          Length = 153296

 Score =  101 bits (51), Expect = 3e-18
 Identities = 72/79 (91%)
 Strand = Plus / Minus

                                                                          
Query: 365    ccttcaactatcagaccatagtacatcatgaacatcatattgttccatggtgatacagtt 424
              |||||||| | |||||||||||||||||| |||||||||||||||||||||||  |||||
Sbjct: 110951 ccttcaaccaccagaccatagtacatcataaacatcatattgttccatggtgacgcagtt 110892

                                 
Query: 425    agctgctccactatgacct 443
              || |||||||||| |||||
Sbjct: 110891 agttgctccactaagacct 110873



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 68/74 (91%)
 Strand = Plus / Minus

                                                                          
Query: 552    atgaggaggagcctcctgagctggagcttcttgacgccggagatcttctgggcgacggcg 611
              |||||||||||||||||| ||||||| ||   ||||||||||||||||||||||| ||||
Sbjct: 110220 atgaggaggagcctcctgcgctggaggttggggacgccggagatcttctgggcgatggcg 110161

                            
Query: 612    tcgctgcagccggc 625
              ||||||||||||||
Sbjct: 110160 tcgctgcagccggc 110147



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 78/89 (87%)
 Strand = Plus / Minus

                                                                          
Query: 208    ccagcatgatgcaacggagctgccgaaaagaactcggagctggagtggcatgtactcgta 267
              |||||| ||||||||  |||||  ||||||||||||||||||||| |||||||| || ||
Sbjct: 112267 ccagcacgatgcaacaaagctgtggaaaagaactcggagctggagcggcatgtattcata 112208

                                           
Query: 268    gttgatccagctaactattggccagaact 296
              ||| ||||| ||||| |||||||||||||
Sbjct: 112207 gtttatccaactaacaattggccagaact 112179



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 92/106 (86%), Gaps = 4/106 (3%)
 Strand = Plus / Minus

                                                                          
Query: 441    ccttcttggctgtagtctcttttcctttcttctgtcccttgaaaatcttgtccataagct 500
              |||||||||||||||| ||||||||||||||   ||||||||||| | ||||||| ||||
Sbjct: 110705 ccttcttggctgtagtttcttttcctttctt---tcccttgaaaaacctgtccatcagct 110649

                                                            
Query: 501    tgtggaaaaaatgaccgaatggtccctgcgtatgcaaatccataga 546
              |||||| |||||| || || |||||| || || |||||||||||||
Sbjct: 110648 tgtggagaaaatggccaaacggtccc-gcataagcaaatccataga 110604



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 39/41 (95%)
 Strand = Plus / Minus

                                                       
Query: 169    ggcaatggatcttgctgctttcaggttcagaaacactgccc 209
              ||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 112409 ggcaatggaccttgctgctttcaggttcagaaatactgccc 112369
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>emb|AL591791.1|SME591791 Sinorhizobium meliloti 1021 complete chromosome; segment 10/12
          Length = 340900

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 585    acgccggagatcttctgggcga 606
              ||||||||||||||||||||||
Sbjct: 242996 acgccggagatcttctgggcga 243017
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>gb|AF365879.1| Vitis vinifera clone GLP1-12 resistance protein gene, partial cds
          Length = 1356

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 48   aagacaaacataaatacaaact 69
            ||||||||||||||||||||||
Sbjct: 1029 aagacaaacataaatacaaact 1008
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 456     tctcttttcctttcttctgtcc 477
               ||||||||||||||||||||||
Sbjct: 8541863 tctcttttcctttcttctgtcc 8541884
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>dbj|AP005510.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0009N02
          Length = 121142

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 456   tctcttttcctttcttctgtcc 477
             ||||||||||||||||||||||
Sbjct: 11186 tctcttttcctttcttctgtcc 11207
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>dbj|AP004018.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1113_G05
          Length = 131445

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 456   tctcttttcctttcttctgtcc 477
             ||||||||||||||||||||||
Sbjct: 91133 tctcttttcctttcttctgtcc 91154
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>gb|AC104881.9| Mus musculus chromosome 18, clone RP23-244A24, complete sequence
          Length = 184796

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 554   gaggaggagcctcctgagctg 574
             |||||||||||||||||||||
Sbjct: 99082 gaggaggagcctcctgagctg 99062
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>emb|Z36948.1|CED2089 Caenorhabditis elegans Cosmid D2089, complete sequence
          Length = 34733

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 382   atagtacatcatgaacatcatattg 406
             ||||||||||||||| |||||||||
Sbjct: 23492 atagtacatcatgaaaatcatattg 23468
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>emb|AL583808.6| Human DNA sequence from clone RP11-262K1 on chromosome 1 Contains a
             novel gene, complete sequence
          Length = 174642

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 46    caaagacaaacataaatacaa 66
             |||||||||||||||||||||
Sbjct: 74208 caaagacaaacataaatacaa 74228
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>gb|AC092931.8| Homo sapiens 3 BAC RP11-131O20 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 152737

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 128    tccttccttccatgcttcttt 148
              |||||||||||||||||||||
Sbjct: 114783 tccttccttccatgcttcttt 114763
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>dbj|AB183488.1| Oryzias latipes DNA, MHC class I region
          Length = 540982

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 44     ttcaaagacaaacataaatac 64
              |||||||||||||||||||||
Sbjct: 360109 ttcaaagacaaacataaatac 360089
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>gb|AC093795.3| Homo sapiens BAC clone RP11-299P3 from 4, complete sequence
          Length = 183917

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 128   tccttccttccatgcttcttt 148
             |||||||||||||||||||||
Sbjct: 15165 tccttccttccatgcttcttt 15185
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>gb|AC113451.11| Mus musculus chromosome 18, clone RP24-402J9, complete sequence
          Length = 158854

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 462   ttcctttcttctgtcccttg 481
             ||||||||||||||||||||
Sbjct: 92341 ttcctttcttctgtcccttg 92322
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>gb|AF111103.1|MMHC322F16 Mouse major histocompatibility complex region containing the Q region
             of class I
          Length = 159179

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 456   tctcttttcctttcttctgt 475
             ||||||||||||||||||||
Sbjct: 29483 tctcttttcctttcttctgt 29502
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>gb|AC166570.2| Mus musculus chromosome 18, clone RP24-74O22, complete sequence
          Length = 163755

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 462    ttcctttcttctgtcccttg 481
              ||||||||||||||||||||
Sbjct: 153896 ttcctttcttctgtcccttg 153915
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>gb|AC025794.9| Mus musculus chromosome 19, clone RP23-62O7, complete sequence
          Length = 242418

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 349   ttgcccaaatggcctccctt 368
             ||||||||||||||||||||
Sbjct: 80600 ttgcccaaatggcctccctt 80619
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>gb|AC128672.4| Mus musculus BAC clone RP23-136O15 from chromosome 18, complete sequence
          Length = 215137

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 127    ctccttccttccatgcttct 146
              ||||||||||||||||||||
Sbjct: 146909 ctccttccttccatgcttct 146928
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>gb|AC084390.1| Mus musculus BAC clone RP23-285H9 from 1, complete sequence
          Length = 177050

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 121   cactcactccttccttccat 140
             ||||||||||||||||||||
Sbjct: 47244 cactcactccttccttccat 47225
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>gb|AY346108.1|AH010782S01 Cricetulus griseus  adaptor protein complex 3 Mu3A gene, exons 4
            through 9 and complete cds
          Length = 5679

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 186  ctttcaggttcagaaacact 205
            ||||||||||||||||||||
Sbjct: 2517 ctttcaggttcagaaacact 2536
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>gb|AC116458.9| Mus musculus chromosome 16, clone RP23-11L14, complete sequence
          Length = 219241

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 474    gtcccttgaaaatcttgtccataa 497
              |||||| |||||||||||||||||
Sbjct: 133238 gtccctggaaaatcttgtccataa 133215
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>emb|AL138708.17| Human DNA sequence from clone RP11-432E15 on chromosome 13 Contains the
              3' end of the gene similar to G protein coupled receptor
              affecting testicular descent (H. sapiens)(GREAT)and a CpG
              island, complete sequence
          Length = 170522

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 557    gaggagcctcctgagctggagctt 580
              |||||||||||||||||| |||||
Sbjct: 135606 gaggagcctcctgagctgcagctt 135583
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>emb|AL137140.12| Human DNA sequence from clone RP11-137M6 on chromosome 13q21.33-22.3
              Contains the SCEL gene for sciellin, a novel gene and a CpG
              island, complete sequence
          Length = 193098

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 44     ttcaaagacaaacataaata 63
              ||||||||||||||||||||
Sbjct: 130541 ttcaaagacaaacataaata 130522
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>emb|AL606993.2|OSJN00121 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0051N19,
             complete sequence
          Length = 49800

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 456   tctcttttcctttcttctgtccct 479
             |||||||| |||||||||||||||
Sbjct: 24171 tctcttttgctttcttctgtccct 24148
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>gb|AC025182.4| Homo sapiens chromosome 5 clone CTD-2192A1, complete sequence
          Length = 109069

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 302   gctgtcaattggatgtttgc 321
             ||||||||||||||||||||
Sbjct: 24973 gctgtcaattggatgtttgc 24992
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>gb|AF111102.2|MMHC214O16 Mus musculus strain 129/SvJ chromosome 17 clone BAC 214O16, complete
             sequence
          Length = 158443

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 456   tctcttttcctttcttctgt 475
             ||||||||||||||||||||
Sbjct: 89097 tctcttttcctttcttctgt 89116
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 456     tctcttttcctttcttctgtccct 479
               |||||||| |||||||||||||||
Sbjct: 5189766 tctcttttgctttcttctgtccct 5189743
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 456      tctcttttcctttcttctgtccct 479
                |||||||| |||||||||||||||
Sbjct: 22318284 tctcttttgctttcttctgtccct 22318261
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>gb|AC104052.9| Homo sapiens chromosome 8, clone CTD-2358M3, complete sequence
          Length = 90940

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 456   tctcttttcctttcttctgtccct 479
             |||||||||||||| |||||||||
Sbjct: 21604 tctcttttcctttcctctgtccct 21627
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>gb|AC087216.1|AC087216 Mus musculus strain 129svj chromosome 17 clone GS1-11M9, complete
             sequence
          Length = 226594

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 456   tctcttttcctttcttctgt 475
             ||||||||||||||||||||
Sbjct: 74738 tctcttttcctttcttctgt 74757



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 456   tctcttttcctttcttctgt 475
             ||||||||||||||||||||
Sbjct: 31485 tctcttttcctttcttctgt 31504
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>gb|AC124944.8| Homo sapiens 3 BAC RP11-352G9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 121914

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 463   tcctttcttctgtcccttga 482
             ||||||||||||||||||||
Sbjct: 61644 tcctttcttctgtcccttga 61663
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>gb|AC016562.7| Homo sapiens chromosome 5 clone CTC-484A9, complete sequence
          Length = 185774

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 270   tgatccagctaactattggc 289
             ||||||||||||||||||||
Sbjct: 50648 tgatccagctaactattggc 50629
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>dbj|AK024904.1| Homo sapiens cDNA: FLJ21251 fis, clone COL01259
          Length = 1822

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 463 tcctttcttctgtcccttga 482
           ||||||||||||||||||||
Sbjct: 326 tcctttcttctgtcccttga 345
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>dbj|AK059672.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-G01, full
           insert sequence
          Length = 1102

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 456 tctcttttcctttcttctgtccct 479
           |||||||| |||||||||||||||
Sbjct: 206 tctcttttgctttcttctgtccct 229
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>gb|U40485.1|PSU40485 Pseudomonas sp. KFCC10818 alkaline-resistant alpha-amylase precursor
            (amy1) gene, complete cds
          Length = 2546

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 487  cttgtccataagcttgtgga 506
            ||||||||||||||||||||
Sbjct: 1833 cttgtccataagcttgtgga 1814
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>dbj|AP001000.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-676M6, complete
              sequence
          Length = 204955

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 286    tggccagaacttccaagctg 305
              ||||||||||||||||||||
Sbjct: 148337 tggccagaacttccaagctg 148356
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 456      tctcttttcctttcttctgtccct 479
                |||||||| |||||||||||||||
Sbjct: 22246629 tctcttttgctttcttctgtccct 22246606
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>emb|AL731741.5|CNS08C7Q Oryza sativa chromosome 12, . BAC OJ1298_D03 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 109610

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 456   tctcttttcctttcttctgtccct 479
             |||||||| |||||||||||||||
Sbjct: 43470 tctcttttgctttcttctgtccct 43493
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>emb|CR974473.23| Mouse DNA sequence from clone RP23-38P5 on chromosome 17, complete
             sequence
          Length = 219471

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 456   tctcttttcctttcttctgt 475
             ||||||||||||||||||||
Sbjct: 28799 tctcttttcctttcttctgt 28818
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>gb|AC002525.1|AC002525 Human PAC clone 257C22A from 13q12-q13, complete sequence
          Length = 140942

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 557   gaggagcctcctgagctggagctt 580
             |||||||||||||||||| |||||
Sbjct: 19075 gaggagcctcctgagctgcagctt 19052
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>emb|CR974466.14| Mouse DNA sequence from clone RP23-331E12 on chromosome 17, complete
              sequence
          Length = 210806

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 456    tctcttttcctttcttctgt 475
              ||||||||||||||||||||
Sbjct: 166336 tctcttttcctttcttctgt 166355
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>emb|CT025573.9| Mouse DNA sequence from clone RP24-274P18 on chromosome 17, complete
             sequence
          Length = 210893

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 125   cactccttccttccatgcttcttt 148
             |||||||||||||||||| |||||
Sbjct: 66543 cactccttccttccatgcatcttt 66520
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>dbj|AB209338.1| Homo sapiens mRNA for Hypothetical protein FLJ16772 variant protein
          Length = 5833

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 463 tcctttcttctgtcccttga 482
           ||||||||||||||||||||
Sbjct: 408 tcctttcttctgtcccttga 427
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>emb|AL928638.7| Mouse DNA sequence from clone RP23-377E1 on chromosome 2, complete
              sequence
          Length = 128608

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 443    ttcttggctgtagtctcttt 462
              ||||||||||||||||||||
Sbjct: 120818 ttcttggctgtagtctcttt 120799
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>emb|AL591882.12| Mouse DNA sequence from clone RP23-53L16 on chromosome 2, complete
              sequence
          Length = 251814

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 457    ctcttttcctttcttctgtc 476
              ||||||||||||||||||||
Sbjct: 190579 ctcttttcctttcttctgtc 190560
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>gb|DQ062814.1| Hippoglossus hippoglossus growth hormone receptor mRNA, complete cds
          Length = 2022

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 456  tctcttttcctttcttctgt 475
            ||||||||||||||||||||
Sbjct: 1542 tctcttttcctttcttctgt 1523


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,016,750
Number of Sequences: 3902068
Number of extensions: 7016750
Number of successful extensions: 174304
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 173953
Number of HSP's gapped (non-prelim): 338
length of query: 630
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 607
effective length of database: 17,143,297,704
effective search space: 10405981706328
effective search space used: 10405981706328
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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