Clone Information

BLAST Search Result

Clone Name	rbags23g01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|U43498.1\|HVU43498 Hordeum vulgare 0-methyltransferase mRNA, p...	1269	0.0
2	gb\|U54767.1\|HVU54767 Hordeum vulgare caffeic acid O-methyltransf...	753	0.0
3	dbj\|AP008218.1\| Oryza sativa (japonica cultivar-group) genomic D...	105	2e-19
4	emb\|AL845348.4\|CNS08CBA Oryza sativa chromosome 12, . BAC OSJNBb...	105	2e-19
5	gb\|DP000011.1\| Oryza sativa (japonica cultivar-group) chromosome...	105	2e-19
6	emb\|BX664711.2\|CNS09SC1 Oryza sativa chromosome 12, . BAC B1001E...	105	2e-19
7	emb\|AL713947.3\|CNS07YPQ Oryza sativa chromosome 12, . BAC OJ1003...	66	2e-07
8	ref\|XM_470970.1\| Oryza sativa (japonica cultivar-group), predic...	64	7e-07
9	emb\|AL662935.3\|OSJN00146 Oryza sativa genomic DNA, chromosome 4,...	64	7e-07
10	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	64	7e-07
11	dbj\|AK069960.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	58	4e-05
12	ref\|XM_474640.1\| Oryza sativa (japonica cultivar-group), predic...	50	0.010
13	emb\|AL731589.3\|OSJN00239 Oryza sativa genomic DNA, chromosome 4,...	50	0.010
14	dbj\|AK098998.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	50	0.010
15	dbj\|AK072016.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	50	0.010
16	gb\|U63634.1\|MCU63634 Mesembryanthemum crystallinum inositol meth...	50	0.010
17	gb\|M87340.1\|CIPIMT1A Mesembryanthemum crystallinum methyl transf...	50	0.010
18	gb\|AF067968.1\|AF067968 Mesembryanthemum crystallinum caffeic aci...	46	0.16
19	emb\|AL646053.1\| Ralstonia solanacearum GMI1000 megaplasmid compl...	44	0.62
20	gb\|AC165365.3\| Mus musculus BAC clone RP23-28N13 from chromosome...	42	2.4
21	dbj\|AK134874.1\| Mus musculus adult male olfactory brain cDNA, RI...	42	2.4
22	gb\|AC169981.3\| Mus musculus BAC clone RP24-346E16 from chromosom...	42	2.4
23	gb\|AE017126.1\| Prochlorococcus marinus subsp. marinus str. CCMP1...	42	2.4
24	gb\|CP000010.1\| Burkholderia mallei ATCC 23344 chromosome 1, comp...	40	9.7
25	ref\|XM_960728.1\| Neurospora crassa OR74A hypothetical protein (N...	40	9.7
26	ref\|XM_954671.1\| Neurospora crassa OR74A hypothetical protein (N...	40	9.7
27	ref\|XM_324860.1\| Neurospora crassa OR74A hypothetical protein (N...	40	9.7
28	ref\|XM_331113.1\| Neurospora crassa OR74A hypothetical protein (N...	40	9.7
29	gb\|CP000124.1\| Burkholderia pseudomallei 1710b chromosome I, com...	40	9.7
30	gb\|AC093477.6\| Mus musculus chromosome 1, clone RP23-58B6, compl...	40	9.7
31	emb\|Z67990.1\|CEF02D10 Caenorhabditis elegans Cosmid F02D10, comp...	40	9.7
32	emb\|BX572095.1\| Prochlorococcus marinus MIT9313 complete genome;...	40	9.7
33	emb\|BX571965.1\| Burkholderia pseudomallei strain K96243, chromos...	40	9.7
34	gb\|AC123904.5\| Homo sapiens 12 BAC RP11-361A23 (Roswell Park Can...	40	9.7
35	gb\|AC125482.9\| Medicago truncatula clone mth2-15h11, complete se...	40	9.7
36	dbj\|AB057033.1\| Helicobacter pylori cagA gene for cytotoxin asso...	40	9.7
37	dbj\|AB057031.1\| Helicobacter pylori cagA gene for cytotoxin asso...	40	9.7
38	dbj\|AB057016.1\| Helicobacter pylori cagA gene for cytotoxin asso...	40	9.7
39	dbj\|AB057015.1\| Helicobacter pylori cagA gene for cytotoxin asso...	40	9.7
40	dbj\|AP007255.1\| Magnetospirillum magneticum AMB-1 DNA, complete ...	40	9.7
41	gb\|AF269342.1\|AF269342 Staphylococcus epidermidis strain SR1 clo...	40	9.7
42	gb\|AF269321.1\|AF269321 Staphylococcus epidermidis strain SR1 clo...	40	9.7
43	gb\|AE006470.1\| Chlorobium tepidum TLS, complete genome	40	9.7
44	dbj\|AB183825.1\| Iris hollandica IhCOMT mRNA for Caffeic acid O-m...	40	9.7
45	gb\|AF270232.1\|AF270232 Staphylococcus epidermidis strain SR1 clo...	40	9.7
46	gb\|AC067918.1\|AC067918 Neurospora crassa chromosome 7, clone G23...	40	9.7
47	emb\|BX908788.1\| Neurospora crassa DNA linkage group VII BAC clon...	40	9.7
48	gb\|CP000029.1\| Staphylococcus epidermidis RP62A, complete genome	40	9.7
49	emb\|BX470164.10\| Zebrafish DNA sequence from clone DKEY-24L11 in...	40	9.7
50	gb\|CP000086.1\| Burkholderia thailandensis E264 chromosome I, com...	40	9.7
51	gb\|AC002352.1\|AC002352 Homo sapiens 12q24 PAC P256D10 complete s...	40	9.7
52	gb\|AE015929.1\| Staphylococcus epidermidis ATCC 12228, complete g...	40	9.7
53	dbj\|AP005671.2\| Homo sapiens genomic DNA, chromosome 18 clone:CT...	40	9.7
54	gb\|AC131584.7\| Mus musculus chromosome 1, clone RP23-215C21, com...	40	9.7
55	emb\|CR385047.19\| Zebrafish DNA sequence from clone DKEY-221N16 i...	40	9.7

>gb|U43498.1|HVU43498 Hordeum vulgare 0-methyltransferase mRNA, partial cds
          Length = 983

 Score = 1269 bits (640), Expect = 0.0
 Identities = 682/693 (98%), Gaps = 4/693 (0%)
 Strand = Plus / Minus

                                                                       
Query: 14  taaatgagcacgtgagctagcagctcttattcgggacattattcgcnnnnnnngaagtgc 73
           ||||||||||||||||||||||||||||||||||||||||||||||       |||||||
Sbjct: 923 taaatgagcacgtgagctagcagctcttattcgggacattattcgcaaaaaaagaagtgc 864

                                                                       
Query: 74  tcctattcgggactataccactctggtacgtggatgctacttggtgaactcaagagcgta 133
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 tcctattcgggactataccactctggtacgtggatgctacttggtgaactcaagagcgta 804

                                                                       
Query: 134 aaagttgaagaatatgtaggttttcttgatgccaccggtaaatccagcttgtttggctag 193
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 aaagttgaagaatatgtaggttttcttgatgccaccggtaaatccagcttgtttggctag 744

                                                                       
Query: 194 cctggcaaactccttctccgtcctctgctttgctcccttgaagagcacaaacatgatgat 253
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 cctggcaaactccttctccgtcctctgctttgctcccttgaagagcacaaacatgatgat 684

                                                                       
Query: 254 atccaaggtgaatgcatcccgcgctgtgagagacgagtctgggttctccgggaggatacc 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 atccaaggtgaatgcatcccgcgctgtgagagacgagtctgggttctccgggaggatacc 624

                                                                       
Query: 314 atccacgacgatcaccttcccgtcttttgggagagcgttgtggcagttgcttagtatttt 373
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 atccacgacgatcaccttcccgtcttttgggagagcgttgtggcagttgcttagtatttt 564

                                                                       
Query: 374 gacgaactcgtcgtcgttaagcataagcgtgatccactgcaagagaaccgcatctccagt 433
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gacgaactcgtcgtcgttaagcataagcgtgatccactgcaagagaaccgcatctccagt 504

                                                                       
Query: 434 gggtatactctcatacatatctccagccacatgttcgactcctggaagagggaggccttg 493
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gggtatactctcatacatatctccagccacatgttcgactcctggaagagggaggccttg 444

                                                                       
Query: 494 ggcgatgacatgaggcaggtcatagttgatgccggtcatgtgcttgtacttagaggtgat 553
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ggcgatgacatgaggcaggtcatagttgatgccggtcatgtgcttgtacttagaggtgat 384

                                                                       
Query: 554 catccctagggtggagccggtgccaccacccgacgtccacaagccgctgcacaccatcga 613
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 383 catccctagggtggagccggtgccacca-ccgacgtccacaagccgctgcacaccatcga 325

                                                                       
Query: 614 atcccttgaagcgctcgagcattcttggtgaccaggatcacagagtgctgagccatggca 673
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atcccttgaagcgctcgagca-tcttggtgaccaggatcacagagtgctgagccatggca 266

                                            
Query: 674 ttgtcgaaacagtgttcccaacccgctggttct 706
           |||||| |||||||||||||| |||||||||||
Sbjct: 265 ttgtcg-aacagtgttcccaa-ccgctggttct 235

to top

>gb|U54767.1|HVU54767 Hordeum vulgare caffeic acid O-methyltransferase (HvCOMT) gene,
            complete cds
          Length = 5238

 Score =  753 bits (380), Expect = 0.0
 Identities = 394/401 (98%)
 Strand = Plus / Minus

                                                                        
Query: 14   taaatgagcacgtgagctagcagctcttattcgggacattattcgcnnnnnnngaagtgc 73
            ||||||||||||||||||||||||||||||||||||||||||||||       |||||||
Sbjct: 4826 taaatgagcacgtgagctagcagctcttattcgggacattattcgcaaaaaaagaagtgc 4767

                                                                        
Query: 74   tcctattcgggactataccactctggtacgtggatgctacttggtgaactcaagagcgta 133
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4766 tcctattcgggactataccactctggtacgtggatgctacttggtgaactcaagagcgta 4707

                                                                        
Query: 134  aaagttgaagaatatgtaggttttcttgatgccaccggtaaatccagcttgtttggctag 193
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4706 aaagttgaagaatatgtaggttttcttgatgccaccggtaaatccagcttgtttggctag 4647

                                                                        
Query: 194  cctggcaaactccttctccgtcctctgctttgctcccttgaagagcacaaacatgatgat 253
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4646 cctggcaaactccttctccgtcctctgctttgctcccttgaagagcacaaacatgatgat 4587

                                                                        
Query: 254  atccaaggtgaatgcatcccgcgctgtgagagacgagtctgggttctccgggaggatacc 313
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4586 atccaaggtgaatgcatcccgcgctgtgagagacgagtctgggttctccgggaggatacc 4527

                                                                        
Query: 314  atccacgacgatcaccttcccgtcttttgggagagcgttgtggcagttgcttagtatttt 373
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4526 atccacgacgatcaccttcccgtcttttgggagagcgttgtggcagttgcttagtatttt 4467

                                                     
Query: 374  gacgaactcgtcgtcgttaagcataagcgtgatccactgca 414
            |||||||||||||||||||||||||||||||||||||||||
Sbjct: 4466 gacgaactcgtcgtcgttaagcataagcgtgatccactgca 4426



 Score =  398 bits (201), Expect = e-108
 Identities = 229/233 (98%), Gaps = 4/233 (1%)
 Strand = Plus / Minus

                                                                        
Query: 474  cctggaagagggaggccttgggcgatgacatgaggcaggtcatagttgatgccggtcatg 533
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3650 cctggaagagggaggccttgggcgatgacatgaggcaggtcatagttgatgccggtcatg 3591

                                                                        
Query: 534  tgcttgtacttagaggtgatcatccctagggtggagccggtgccaccacccgacgtccac 593
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 3590 tgcttgtacttagaggtgatcatccctagggtggagccggtgccacca-ccgacgtccac 3532

                                                                        
Query: 594  aagccgctgcacaccatcgaatcccttgaagcgctcgagcattcttggtgaccaggatca 653
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 3531 aagccgctgcacaccatcgaatcccttgaagcgctcgagca-tcttggtgaccaggatca 3473

                                                                 
Query: 654  cagagtgctgagccatggcattgtcgaaacagtgttcccaacccgctggttct 706
            |||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 3472 cagagtgctgagccatggcattgtcg-aacagtgttcccaa-ccgctggttct 3422



 Score =  135 bits (68), Expect = 2e-28
 Identities = 68/68 (100%)
 Strand = Plus / Minus

                                                                        
Query: 410  ctgcaagagaaccgcatctccagtgggtatactctcatacatatctccagccacatgttc 469
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3910 ctgcaagagaaccgcatctccagtgggtatactctcatacatatctccagccacatgttc 3851

                    
Query: 470  gactcctg 477
            ||||||||
Sbjct: 3850 gactcctg 3843

to top

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score =  105 bits (53), Expect = 2e-19
 Identities = 154/185 (83%), Gaps = 2/185 (1%)
 Strand = Plus / Minus

                                                                           
Query: 497     gatgacatgaggcaggtcatagttgatgccggtcatgtgcttgtacttagaggtgatcat 556
               ||||||||||||||||||||||||||||||  | ||||||||||||   |||||||||||
Sbjct: 5364332 gatgacatgaggcaggtcatagttgatgcccctaatgtgcttgtaccgcgaggtgatcat 5364273

                                                                           
Query: 557     ccctagggtggagccggtgccaccacccgacgtccacaagccgctgcacaccatcgaatc 616
               ||| |||||||| |||   || ||| ||||| || || ||| |||| || || |||||||
Sbjct: 5364272 ccccagggtggatccgtcaccccca-ccgacatcgacgagctgctggacgccgtcgaatc 5364214

                                                                           
Query: 617     ccttgaagcgctcgagcattcttggtgaccaggatcacagagtgctgagccatggcattg 676
               | | |||||| ||||||| ||||| ||||||| ||||| || ||||| |||||||| | |
Sbjct: 5364213 cttggaagcgttcgagca-tcttgctgaccagaatcactgaatgctgcgccatggcgtgg 5364155

                    
Query: 677     tcgaa 681
               |||||
Sbjct: 5364154 tcgaa 5364150



 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 130/157 (82%)
 Strand = Plus / Minus

                                                                           
Query: 118     tgaactcaagagcgtaaaagttgaagaatatgtaggttttcttgatgccaccggtaaatc 177
               ||||||||||||| || ||||| ||||||||||||||   |   | |  ||||||||| |
Sbjct: 5374724 tgaactcaagagcatagaagttcaagaatatgtaggtcgaccgaaaggtaccggtaaagc 5374665

                                                                           
Query: 178     cagcttgtttggctagcctggcaaactccttctccgtcctctgctttgctcccttgaaga 237
               ||||||  ||||| ||| | |||||||| | |||||||||||| ||| || |||||||||
Sbjct: 5374664 cagcttccttggcaagctttgcaaactcttgctccgtcctctgttttcctaccttgaaga 5374605

                                                    
Query: 238     gcacaaacatgatgatatccaaggtgaatgcatcccg 274
               | ||||||||||| ||||||| |||||||| ||||||
Sbjct: 5374604 ggacaaacatgatcatatccatggtgaatgaatcccg 5374568



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 135/169 (79%)
 Strand = Plus / Minus

                                                                           
Query: 109     gctacttggtgaactcaagagcgtaaaagttgaagaatatgtaggttttcttgatgccac 168
               |||||||  |||||||||| ||||| ||||| ||||||||||||||   |  || |  ||
Sbjct: 5173415 gctacttattgaactcaagggcgtagaagttcaagaatatgtaggtcgaccggaaggtac 5173356

                                                                           
Query: 169     cggtaaatccagcttgtttggctagcctggcaaactccttctccgtcctctgctttgctc 228
               ||||||| ||||  |  ||||| ||| | |||||||| | ||| ||||| |||||  || 
Sbjct: 5173355 cggtaaagccagactccttggcaagctttgcaaactcttgctctgtcctgtgcttcccta 5173296

                                                                
Query: 229     ccttgaagagcacaaacatgatgatatccaaggtgaatgcatcccgcgc 277
               |||||||||| ||||||| ||| ||||||| |||||||| |||| ||||
Sbjct: 5173295 ccttgaagaggacaaacaagatcatatccatggtgaatgaatcctgcgc 5173247



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 148/185 (80%), Gaps = 2/185 (1%)
 Strand = Plus / Minus

                                                                           
Query: 497     gatgacatgaggcaggtcatagttgatgccggtcatgtgcttgtacttagaggtgatcat 556
               |||||| |||||||||||||||||||||||  | || ||||| |||    ||||||||||
Sbjct: 5172160 gatgacgtgaggcaggtcatagttgatgcccctaatatgcttataccgctaggtgatcat 5172101

                                                                           
Query: 557     ccctagggtggagccggtgccaccacccgacgtccacaagccgctgcacaccatcgaatc 616
               ||| |||||||| |||  ||| ||| ||| | || || |||||||| |  |||||||| |
Sbjct: 5172100 ccccagggtggatccgtcgcctcca-ccggcatcgacgagccgctggatgccatcgaaac 5172042

                                                                           
Query: 617     ccttgaagcgctcgagcattcttggtgaccaggatcacagagtgctgagccatggcattg 676
               | | |||||| ||||||| |||||  | || ||||| | |||||||| |||||||| | |
Sbjct: 5172041 cttcgaagcgttcgagca-tcttgcgggcccggatcgccgagtgctgcgccatggcgtgg 5171983

                    
Query: 677     tcgaa 681
               |||||
Sbjct: 5171982 tcgaa 5171978



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                           
Query: 410     ctgcaagagaaccgcatctccagtgggtatactctcatacatatctccagccacatgttc 469
               |||||| ||||  ||||||||| |||| | ||||||||||||||||||||| | ||||||
Sbjct: 5172597 ctgcaaaagaattgcatctccattgggcacactctcatacatatctccagctatatgttc 5172538

to top

>emb|AL845348.4|CNS08CBA Oryza sativa chromosome 12, . BAC OSJNBb0070A23 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 105645

 Score =  105 bits (53), Expect = 2e-19
 Identities = 154/185 (83%), Gaps = 2/185 (1%)
 Strand = Plus / Minus

                                                                         
Query: 497   gatgacatgaggcaggtcatagttgatgccggtcatgtgcttgtacttagaggtgatcat 556
             ||||||||||||||||||||||||||||||  | ||||||||||||   |||||||||||
Sbjct: 36399 gatgacatgaggcaggtcatagttgatgcccctaatgtgcttgtaccgcgaggtgatcat 36340

                                                                         
Query: 557   ccctagggtggagccggtgccaccacccgacgtccacaagccgctgcacaccatcgaatc 616
             ||| |||||||| |||   || ||| ||||| || || ||| |||| || || |||||||
Sbjct: 36339 ccccagggtggatccgtcaccccca-ccgacatcgacgagctgctggacgccgtcgaatc 36281

                                                                         
Query: 617   ccttgaagcgctcgagcattcttggtgaccaggatcacagagtgctgagccatggcattg 676
             | | |||||| ||||||| ||||| ||||||| ||||| || ||||| |||||||| | |
Sbjct: 36280 cttggaagcgttcgagca-tcttgctgaccagaatcactgaatgctgcgccatggcgtgg 36222

                  
Query: 677   tcgaa 681
             |||||
Sbjct: 36221 tcgaa 36217



 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 130/157 (82%)
 Strand = Plus / Minus

                                                                         
Query: 118   tgaactcaagagcgtaaaagttgaagaatatgtaggttttcttgatgccaccggtaaatc 177
             ||||||||||||| || ||||| ||||||||||||||   |   | |  ||||||||| |
Sbjct: 46791 tgaactcaagagcatagaagttcaagaatatgtaggtcgaccgaaaggtaccggtaaagc 46732

                                                                         
Query: 178   cagcttgtttggctagcctggcaaactccttctccgtcctctgctttgctcccttgaaga 237
             ||||||  ||||| ||| | |||||||| | |||||||||||| ||| || |||||||||
Sbjct: 46731 cagcttccttggcaagctttgcaaactcttgctccgtcctctgttttcctaccttgaaga 46672

                                                  
Query: 238   gcacaaacatgatgatatccaaggtgaatgcatcccg 274
             | ||||||||||| ||||||| |||||||| ||||||
Sbjct: 46671 ggacaaacatgatcatatccatggtgaatgaatcccg 46635

to top

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  105 bits (53), Expect = 2e-19
 Identities = 154/185 (83%), Gaps = 2/185 (1%)
 Strand = Plus / Minus

                                                                           
Query: 497     gatgacatgaggcaggtcatagttgatgccggtcatgtgcttgtacttagaggtgatcat 556
               ||||||||||||||||||||||||||||||  | ||||||||||||   |||||||||||
Sbjct: 5364321 gatgacatgaggcaggtcatagttgatgcccctaatgtgcttgtaccgcgaggtgatcat 5364262

                                                                           
Query: 557     ccctagggtggagccggtgccaccacccgacgtccacaagccgctgcacaccatcgaatc 616
               ||| |||||||| |||   || ||| ||||| || || ||| |||| || || |||||||
Sbjct: 5364261 ccccagggtggatccgtcaccccca-ccgacatcgacgagctgctggacgccgtcgaatc 5364203

                                                                           
Query: 617     ccttgaagcgctcgagcattcttggtgaccaggatcacagagtgctgagccatggcattg 676
               | | |||||| ||||||| ||||| ||||||| ||||| || ||||| |||||||| | |
Sbjct: 5364202 cttggaagcgttcgagca-tcttgctgaccagaatcactgaatgctgcgccatggcgtgg 5364144

                    
Query: 677     tcgaa 681
               |||||
Sbjct: 5364143 tcgaa 5364139



 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 130/157 (82%)
 Strand = Plus / Minus

                                                                           
Query: 118     tgaactcaagagcgtaaaagttgaagaatatgtaggttttcttgatgccaccggtaaatc 177
               ||||||||||||| || ||||| ||||||||||||||   |   | |  ||||||||| |
Sbjct: 5374713 tgaactcaagagcatagaagttcaagaatatgtaggtcgaccgaaaggtaccggtaaagc 5374654

                                                                           
Query: 178     cagcttgtttggctagcctggcaaactccttctccgtcctctgctttgctcccttgaaga 237
               ||||||  ||||| ||| | |||||||| | |||||||||||| ||| || |||||||||
Sbjct: 5374653 cagcttccttggcaagctttgcaaactcttgctccgtcctctgttttcctaccttgaaga 5374594

                                                    
Query: 238     gcacaaacatgatgatatccaaggtgaatgcatcccg 274
               | ||||||||||| ||||||| |||||||| ||||||
Sbjct: 5374593 ggacaaacatgatcatatccatggtgaatgaatcccg 5374557



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 135/169 (79%)
 Strand = Plus / Minus

                                                                           
Query: 109     gctacttggtgaactcaagagcgtaaaagttgaagaatatgtaggttttcttgatgccac 168
               |||||||  |||||||||| ||||| ||||| ||||||||||||||   |  || |  ||
Sbjct: 5173397 gctacttattgaactcaagggcgtagaagttcaagaatatgtaggtcgaccggaaggtac 5173338

                                                                           
Query: 169     cggtaaatccagcttgtttggctagcctggcaaactccttctccgtcctctgctttgctc 228
               ||||||| ||||  |  ||||| ||| | |||||||| | ||| ||||| |||||  || 
Sbjct: 5173337 cggtaaagccagactccttggcaagctttgcaaactcttgctctgtcctgtgcttcccta 5173278

                                                                
Query: 229     ccttgaagagcacaaacatgatgatatccaaggtgaatgcatcccgcgc 277
               |||||||||| ||||||| ||| ||||||| |||||||| |||| ||||
Sbjct: 5173277 ccttgaagaggacaaacaagatcatatccatggtgaatgaatcctgcgc 5173229



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 148/185 (80%), Gaps = 2/185 (1%)
 Strand = Plus / Minus

                                                                           
Query: 497     gatgacatgaggcaggtcatagttgatgccggtcatgtgcttgtacttagaggtgatcat 556
               |||||| |||||||||||||||||||||||  | || ||||| |||    ||||||||||
Sbjct: 5172142 gatgacgtgaggcaggtcatagttgatgcccctaatatgcttataccgctaggtgatcat 5172083

                                                                           
Query: 557     ccctagggtggagccggtgccaccacccgacgtccacaagccgctgcacaccatcgaatc 616
               ||| |||||||| |||  ||| ||| ||| | || || |||||||| |  |||||||| |
Sbjct: 5172082 ccccagggtggatccgtcgcctcca-ccggcatcgacgagccgctggatgccatcgaaac 5172024

                                                                           
Query: 617     ccttgaagcgctcgagcattcttggtgaccaggatcacagagtgctgagccatggcattg 676
               | | |||||| ||||||| |||||  | || ||||| | |||||||| |||||||| | |
Sbjct: 5172023 cttcgaagcgttcgagca-tcttgcgggcccggatcgccgagtgctgcgccatggcgtgg 5171965

                    
Query: 677     tcgaa 681
               |||||
Sbjct: 5171964 tcgaa 5171960



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                           
Query: 410     ctgcaagagaaccgcatctccagtgggtatactctcatacatatctccagccacatgttc 469
               |||||| ||||  ||||||||| |||| | ||||||||||||||||||||| | ||||||
Sbjct: 5172579 ctgcaaaagaattgcatctccattgggcacactctcatacatatctccagctatatgttc 5172520

to top

>emb|BX664711.2|CNS09SC1 Oryza sativa chromosome 12, . BAC B1001E08 of chromosome 12 of cultivar
              Nipponbare of ssp. japonica of Oryza sativa (rice),
              complete sequence
          Length = 141841

 Score =  105 bits (53), Expect = 2e-19
 Identities = 154/185 (83%), Gaps = 2/185 (1%)
 Strand = Plus / Plus

                                                                          
Query: 497    gatgacatgaggcaggtcatagttgatgccggtcatgtgcttgtacttagaggtgatcat 556
              ||||||||||||||||||||||||||||||  | ||||||||||||   |||||||||||
Sbjct: 101476 gatgacatgaggcaggtcatagttgatgcccctaatgtgcttgtaccgcgaggtgatcat 101535

                                                                          
Query: 557    ccctagggtggagccggtgccaccacccgacgtccacaagccgctgcacaccatcgaatc 616
              ||| |||||||| |||   || ||| ||||| || || ||| |||| || || |||||||
Sbjct: 101536 ccccagggtggatccgtcaccccca-ccgacatcgacgagctgctggacgccgtcgaatc 101594

                                                                          
Query: 617    ccttgaagcgctcgagcattcttggtgaccaggatcacagagtgctgagccatggcattg 676
              | | |||||| ||||||| ||||| ||||||| ||||| || ||||| |||||||| | |
Sbjct: 101595 cttggaagcgttcgagca-tcttgctgaccagaatcactgaatgctgcgccatggcgtgg 101653

                   
Query: 677    tcgaa 681
              |||||
Sbjct: 101654 tcgaa 101658



 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 130/157 (82%)
 Strand = Plus / Plus

                                                                         
Query: 118   tgaactcaagagcgtaaaagttgaagaatatgtaggttttcttgatgccaccggtaaatc 177
             ||||||||||||| || ||||| ||||||||||||||   |   | |  ||||||||| |
Sbjct: 91084 tgaactcaagagcatagaagttcaagaatatgtaggtcgaccgaaaggtaccggtaaagc 91143

                                                                         
Query: 178   cagcttgtttggctagcctggcaaactccttctccgtcctctgctttgctcccttgaaga 237
             ||||||  ||||| ||| | |||||||| | |||||||||||| ||| || |||||||||
Sbjct: 91144 cagcttccttggcaagctttgcaaactcttgctccgtcctctgttttcctaccttgaaga 91203

                                                  
Query: 238   gcacaaacatgatgatatccaaggtgaatgcatcccg 274
             | ||||||||||| ||||||| |||||||| ||||||
Sbjct: 91204 ggacaaacatgatcatatccatggtgaatgaatcccg 91240

to top

>emb|AL713947.3|CNS07YPQ Oryza sativa chromosome 12, . BAC OJ1003_A04 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 124959

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 135/169 (79%)
 Strand = Plus / Plus

                                                                         
Query: 109   gctacttggtgaactcaagagcgtaaaagttgaagaatatgtaggttttcttgatgccac 168
             |||||||  |||||||||| ||||| ||||| ||||||||||||||   |  || |  ||
Sbjct: 90184 gctacttattgaactcaagggcgtagaagttcaagaatatgtaggtcgaccggaaggtac 90243

                                                                         
Query: 169   cggtaaatccagcttgtttggctagcctggcaaactccttctccgtcctctgctttgctc 228
             ||||||| ||||  |  ||||| ||| | |||||||| | ||| ||||| |||||  || 
Sbjct: 90244 cggtaaagccagactccttggcaagctttgcaaactcttgctctgtcctgtgcttcccta 90303

                                                              
Query: 229   ccttgaagagcacaaacatgatgatatccaaggtgaatgcatcccgcgc 277
             |||||||||| ||||||| ||| ||||||| |||||||| |||| ||||
Sbjct: 90304 ccttgaagaggacaaacaagatcatatccatggtgaatgaatcctgcgc 90352



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 148/185 (80%), Gaps = 2/185 (1%)
 Strand = Plus / Plus

                                                                         
Query: 497   gatgacatgaggcaggtcatagttgatgccggtcatgtgcttgtacttagaggtgatcat 556
             |||||| |||||||||||||||||||||||  | || ||||| |||    ||||||||||
Sbjct: 91439 gatgacgtgaggcaggtcatagttgatgcccctaatatgcttataccgctaggtgatcat 91498

                                                                         
Query: 557   ccctagggtggagccggtgccaccacccgacgtccacaagccgctgcacaccatcgaatc 616
             ||| |||||||| |||  ||| ||| ||| | || || |||||||| |  |||||||| |
Sbjct: 91499 ccccagggtggatccgtcgcctcca-ccggcatcgacgagccgctggatgccatcgaaac 91557

                                                                         
Query: 617   ccttgaagcgctcgagcattcttggtgaccaggatcacagagtgctgagccatggcattg 676
             | | |||||| ||||||| |||||  | || ||||| | |||||||| |||||||| | |
Sbjct: 91558 cttcgaagcgttcgagca-tcttgcgggcccggatcgccgagtgctgcgccatggcgtgg 91616

                  
Query: 677   tcgaa 681
             |||||
Sbjct: 91617 tcgaa 91621



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 52/60 (86%)
 Strand = Plus / Plus

                                                                         
Query: 410   ctgcaagagaaccgcatctccagtgggtatactctcatacatatctccagccacatgttc 469
             |||||| ||||  ||||||||| |||| | ||||||||||||||||||||| | ||||||
Sbjct: 91002 ctgcaaaagaattgcatctccattgggcacactctcatacatatctccagctatatgttc 91061

to top

>ref|XM_470970.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1065

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 68/80 (85%)
 Strand = Plus / Minus

                                                                       
Query: 498 atgacatgaggcaggtcatagttgatgccggtcatgtgcttgtacttagaggtgatcatc 557
           |||||||||||||||||  |||| | |||||| |||| ||||||| | || |||||||||
Sbjct: 677 atgacatgaggcaggtcgaagttaacgccggtgatgttcttgtacctcgaagtgatcatc 618

                               
Query: 558 cctagggtggagccggtgcc 577
            | ||||||| |||||||||
Sbjct: 617 tccagggtggcgccggtgcc 598

to top

>emb|AL662935.3|OSJN00146 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0094O15,
              complete sequence
          Length = 144778

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 68/80 (85%)
 Strand = Plus / Minus

                                                                          
Query: 498    atgacatgaggcaggtcatagttgatgccggtcatgtgcttgtacttagaggtgatcatc 557
              |||||||||||||||||  |||| | |||||| |||| ||||||| | || |||||||||
Sbjct: 103606 atgacatgaggcaggtcgaagttaacgccggtgatgttcttgtacctcgaagtgatcatc 103547

                                  
Query: 558    cctagggtggagccggtgcc 577
               | ||||||| |||||||||
Sbjct: 103546 tccagggtggcgccggtgcc 103527

to top

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4,
              complete sequence
          Length = 35498469

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 68/80 (85%)
 Strand = Plus / Minus

                                                                          
Query: 498    atgacatgaggcaggtcatagttgatgccggtcatgtgcttgtacttagaggtgatcatc 557
              |||||||||||||||||  |||| | |||||| |||| ||||||| | || |||||||||
Sbjct: 307786 atgacatgaggcaggtcgaagttaacgccggtgatgttcttgtacctcgaagtgatcatc 307727

                                  
Query: 558    cctagggtggagccggtgcc 577
               | ||||||| |||||||||
Sbjct: 307726 tccagggtggcgccggtgcc 307707



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 67/81 (82%)
 Strand = Plus / Minus

                                                                           
Query: 497     gatgacatgaggcaggtcatagttgatgccggtcatgtgcttgtacttagaggtgatcat 556
               ||||||||| || |||||  |||| | |||||| || |||||||||   |||||||||||
Sbjct: 5127584 gatgacatggggtaggtcgaagttaacgccggtgatatgcttgtaccgggaggtgatcat 5127525

                                    
Query: 557     ccctagggtggagccggtgcc 577
               | | ||||||| |||||||||
Sbjct: 5127524 ctccagggtggcgccggtgcc 5127504

to top

>dbj|AK069960.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023037K22, full
           insert sequence
          Length = 1233

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                       
Query: 501 acatgaggcaggtcatagttgatgccggtcatgtgcttgtacttagaggtgatcatccct 560
           ||||||||||||||  |||| | |||||| |||| ||||||| | || ||||||||| | 
Sbjct: 684 acatgaggcaggtcgaagttaacgccggtgatgttcttgtacctcgaagtgatcatctcc 625

                            
Query: 561 agggtggagccggtgcc 577
           ||||||| |||||||||
Sbjct: 624 agggtggcgccggtgcc 608

to top

>ref|XM_474640.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1137

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 67/81 (82%)
 Strand = Plus / Minus

                                                                       
Query: 497 gatgacatgaggcaggtcatagttgatgccggtcatgtgcttgtacttagaggtgatcat 556
           ||||||||| || |||||  |||| | |||||| || |||||||||   |||||||||||
Sbjct: 747 gatgacatggggtaggtcgaagttaacgccggtgatatgcttgtaccgggaggtgatcat 688

                                
Query: 557 ccctagggtggagccggtgcc 577
           | | ||||||| |||||||||
Sbjct: 687 ctccagggtggcgccggtgcc 667

to top

>emb|AL731589.3|OSJN00239 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039G19,
              complete sequence
          Length = 144144

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 67/81 (82%)
 Strand = Plus / Minus

                                                                          
Query: 497    gatgacatgaggcaggtcatagttgatgccggtcatgtgcttgtacttagaggtgatcat 556
              ||||||||| || |||||  |||| | |||||| || |||||||||   |||||||||||
Sbjct: 103857 gatgacatggggtaggtcgaagttaacgccggtgatatgcttgtaccgggaggtgatcat 103798

                                   
Query: 557    ccctagggtggagccggtgcc 577
              | | ||||||| |||||||||
Sbjct: 103797 ctccagggtggcgccggtgcc 103777

to top

>dbj|AK098998.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013104D16, full
           insert sequence
          Length = 1308

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 67/81 (82%)
 Strand = Plus / Minus

                                                                       
Query: 497 gatgacatgaggcaggtcatagttgatgccggtcatgtgcttgtacttagaggtgatcat 556
           ||||||||| || |||||  |||| | |||||| || |||||||||   |||||||||||
Sbjct: 773 gatgacatggggtaggtcgaagttaacgccggtgatatgcttgtaccgggaggtgatcat 714

                                
Query: 557 ccctagggtggagccggtgcc 577
           | | ||||||| |||||||||
Sbjct: 713 ctccagggtggcgccggtgcc 693

to top

>dbj|AK072016.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013102F20, full
           insert sequence
          Length = 1365

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 67/81 (82%)
 Strand = Plus / Minus

                                                                       
Query: 497 gatgacatgaggcaggtcatagttgatgccggtcatgtgcttgtacttagaggtgatcat 556
           ||||||||| || |||||  |||| | |||||| || |||||||||   |||||||||||
Sbjct: 760 gatgacatggggtaggtcgaagttaacgccggtgatatgcttgtaccgggaggtgatcat 701

                                
Query: 557 ccctagggtggagccggtgcc 577
           | | ||||||| |||||||||
Sbjct: 700 ctccagggtggcgccggtgcc 680

to top

>gb|U63634.1|MCU63634 Mesembryanthemum crystallinum inositol methyltransferase (Imt1) gene,
            complete cds
          Length = 3929

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 498  atgacatgaggcaggtcatagttgatgcc 526
            ||||||||||||| |||||||||||||||
Sbjct: 2808 atgacatgaggcaagtcatagttgatgcc 2780

to top

>gb|M87340.1|CIPIMT1A Mesembryanthemum crystallinum methyl transferase (Imt1) mRNA,
           complete cds
          Length = 1494

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 498 atgacatgaggcaggtcatagttgatgcc 526
           ||||||||||||| |||||||||||||||
Sbjct: 756 atgacatgaggcaagtcatagttgatgcc 728

to top

>gb|AF067968.1|AF067968 Mesembryanthemum crystallinum caffeic acid 3-O-methyltransferase
           mRNA, partial cds
          Length = 1205

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 496 cgatgacatgaggcaggtcatagttgatgcc 526
           |||||||||||||||| ||| ||||||||||
Sbjct: 666 cgatgacatgaggcagatcaaagttgatgcc 636

to top

>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 587     cgtccacaagccgctgcacacc 608
               ||||||||||||||||||||||
Sbjct: 1987800 cgtccacaagccgctgcacacc 1987779

to top

>gb|AC165365.3| Mus musculus BAC clone RP23-28N13 from chromosome 6, complete sequence
          Length = 238262

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 444    tcatacatatctccagccacatgtt 468
              |||||||||| ||||||||||||||
Sbjct: 237760 tcatacatatatccagccacatgtt 237784

to top

>dbj|AK134874.1| Mus musculus adult male olfactory brain cDNA, RIKEN full-length
            enriched library, clone:6430501C11
            product:unclassifiable, full insert sequence
          Length = 1789

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 444  tcatacatatctccagccacatgtt 468
            |||||||||| ||||||||||||||
Sbjct: 1024 tcatacatatatccagccacatgtt 1048

to top

>gb|AC169981.3| Mus musculus BAC clone RP24-346E16 from chromosome 6, complete sequence
          Length = 150872

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 444   tcatacatatctccagccacatgtt 468
             |||||||||| ||||||||||||||
Sbjct: 45951 tcatacatatatccagccacatgtt 45975

to top

>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome
          Length = 1751080

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 136    agttgaagaatatgtaggttttctt 160
              |||||||||| ||||||||||||||
Sbjct: 313473 agttgaagaaaatgtaggttttctt 313449

to top

>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 616    cccttgaagcgctcgagcat 635
              ||||||||||||||||||||
Sbjct: 406715 cccttgaagcgctcgagcat 406734

to top

>ref|XM_960728.1| Neurospora crassa OR74A hypothetical protein (NCU00681.1) partial
           mRNA
          Length = 3549

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 475 ctggaagagggaggccttgg 494
           ||||||||||||||||||||
Sbjct: 111 ctggaagagggaggccttgg 92

to top

>ref|XM_954671.1| Neurospora crassa OR74A hypothetical protein (NCU02338.1) partial
           mRNA
          Length = 843

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 481 gagggaggccttgggcgatg 500
           ||||||||||||||||||||
Sbjct: 265 gagggaggccttgggcgatg 246

to top

>ref|XM_324860.1| Neurospora crassa OR74A hypothetical protein (NCU00681.1) partial
           mRNA
          Length = 3549

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 475 ctggaagagggaggccttgg 494
           ||||||||||||||||||||
Sbjct: 111 ctggaagagggaggccttgg 92

to top

>ref|XM_331113.1| Neurospora crassa OR74A hypothetical protein (NCU02338.1) partial
           mRNA
          Length = 843

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 481 gagggaggccttgggcgatg 500
           ||||||||||||||||||||
Sbjct: 265 gagggaggccttgggcgatg 246

to top

>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 616     cccttgaagcgctcgagcat 635
               ||||||||||||||||||||
Sbjct: 3254199 cccttgaagcgctcgagcat 3254218

to top

>gb|AC093477.6| Mus musculus chromosome 1, clone RP23-58B6, complete sequence
          Length = 225321

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 231    ttgaagagcacaaacatgat 250
              ||||||||||||||||||||
Sbjct: 180691 ttgaagagcacaaacatgat 180672

to top

>emb|Z67990.1|CEF02D10 Caenorhabditis elegans Cosmid F02D10, complete sequence
          Length = 25359

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 377   gaactcgtcgtcgttaagca 396
             ||||||||||||||||||||
Sbjct: 23437 gaactcgtcgtcgttaagca 23418

to top

>emb|BX572095.1| Prochlorococcus marinus MIT9313 complete genome; segment 1/7
          Length = 349391

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 196    tggcaaactccttctccgtc 215
              ||||||||||||||||||||
Sbjct: 340353 tggcaaactccttctccgtc 340372

to top

>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 616     cccttgaagcgctcgagcat 635
               ||||||||||||||||||||
Sbjct: 2984071 cccttgaagcgctcgagcat 2984090

to top

>gb|AC123904.5| Homo sapiens 12 BAC RP11-361A23 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 125400

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 242    aaacatgatgatatccaagg 261
              ||||||||||||||||||||
Sbjct: 120643 aaacatgatgatatccaagg 120624

to top

>gb|AC125482.9| Medicago truncatula clone mth2-15h11, complete sequence
          Length = 129658

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 240    acaaacatgatgatatccaa 259
              ||||||||||||||||||||
Sbjct: 111959 acaaacatgatgatatccaa 111978

to top

>dbj|AB057033.1| Helicobacter pylori cagA gene for cytotoxin associated protein
           CagA, partial cds, 3' region, strain:JapanK101
          Length = 734

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 338 ttttgggagagcgttgtggc 357
           ||||||||||||||||||||
Sbjct: 137 ttttgggagagcgttgtggc 118

to top

>dbj|AB057031.1| Helicobacter pylori cagA gene for cytotoxin associated protein
           CagA, partial cds, 3' region, strain:JapanK89
          Length = 734

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 338 ttttgggagagcgttgtggc 357
           ||||||||||||||||||||
Sbjct: 137 ttttgggagagcgttgtggc 118

to top

>dbj|AB057016.1| Helicobacter pylori cagA gene for cytotoxin associated protein
           CagA, partial cds, 3' region, strain:JapanK41
          Length = 728

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 338 ttttgggagagcgttgtggc 357
           ||||||||||||||||||||
Sbjct: 137 ttttgggagagcgttgtggc 118

to top

>dbj|AB057015.1| Helicobacter pylori cagA gene for cytotoxin associated protein
           CagA, partial cds, 3' region, strain:JapanK35
          Length = 734

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 338 ttttgggagagcgttgtggc 357
           ||||||||||||||||||||
Sbjct: 137 ttttgggagagcgttgtggc 118

to top

>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 635     ttcttggtgaccaggatcac 654
               ||||||||||||||||||||
Sbjct: 4841153 ttcttggtgaccaggatcac 4841172

to top

>gb|AF269342.1|AF269342 Staphylococcus epidermidis strain SR1 clone step.1002d03 genomic
           sequence
          Length = 3734

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 133 aaaagttgaagaatatgtag 152
           ||||||||||||||||||||
Sbjct: 177 aaaagttgaagaatatgtag 158

to top

>gb|AF269321.1|AF269321 Staphylococcus epidermidis strain SR1 clone step.1002a08 genomic
            sequence
          Length = 3383

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 133  aaaagttgaagaatatgtag 152
            ||||||||||||||||||||
Sbjct: 2238 aaaagttgaagaatatgtag 2257

to top

>gb|AE006470.1| Chlorobium tepidum TLS, complete genome
          Length = 2154946

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 608    catcgaatcccttgaagcgc 627
              ||||||||||||||||||||
Sbjct: 833397 catcgaatcccttgaagcgc 833378

to top

>dbj|AB183825.1| Iris hollandica IhCOMT mRNA for Caffeic acid O-methyltransferase,
           complete cds
          Length = 1303

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 423 gcatctccagtgggtatactctcatacatatctcca 458
           ||||||||| |||| | ||||||| |||||||||||
Sbjct: 788 gcatctccactgggaacactctcaaacatatctcca 753

to top

>gb|AF270232.1|AF270232 Staphylococcus epidermidis strain SR1 clone step.1055e11 genomic
            sequence
          Length = 2995

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 133  aaaagttgaagaatatgtag 152
            ||||||||||||||||||||
Sbjct: 1549 aaaagttgaagaatatgtag 1530

to top

>gb|AC067918.1|AC067918 Neurospora crassa chromosome 7, clone G23-F12, complete sequence
          Length = 42412

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 481  gagggaggccttgggcgatg 500
            ||||||||||||||||||||
Sbjct: 5744 gagggaggccttgggcgatg 5763

to top

>emb|BX908788.1| Neurospora crassa DNA linkage group VII BAC clone B23N11
          Length = 46353

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 481   gagggaggccttgggcgatg 500
             ||||||||||||||||||||
Sbjct: 39948 gagggaggccttgggcgatg 39967

to top

>gb|CP000029.1| Staphylococcus epidermidis RP62A, complete genome
          Length = 2616530

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 133    aaaagttgaagaatatgtag 152
              ||||||||||||||||||||
Sbjct: 226670 aaaagttgaagaatatgtag 226689

to top

>emb|BX470164.10| Zebrafish DNA sequence from clone DKEY-24L11 in linkage group 18,
              complete sequence
          Length = 248419

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 169    cggtaaatccagcttgtttg 188
              ||||||||||||||||||||
Sbjct: 147510 cggtaaatccagcttgtttg 147491

to top

>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 616     cccttgaagcgctcgagcat 635
               ||||||||||||||||||||
Sbjct: 1888851 cccttgaagcgctcgagcat 1888832

to top

>gb|AC002352.1|AC002352 Homo sapiens 12q24 PAC P256D10 complete sequence
          Length = 162405

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 188   ggctagcctggcaaactcct 207
             ||||||||||||||||||||
Sbjct: 87830 ggctagcctggcaaactcct 87811

to top

>gb|AE015929.1| Staphylococcus epidermidis ATCC 12228, complete genome
          Length = 2499279

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 133    aaaagttgaagaatatgtag 152
              ||||||||||||||||||||
Sbjct: 342005 aaaagttgaagaatatgtag 342024

to top

>dbj|AP005671.2| Homo sapiens genomic DNA, chromosome 18 clone:CTD-3096M3, complete
             sequence
          Length = 86000

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 227   tcccttgaagagcacaaaca 246
             ||||||||||||||||||||
Sbjct: 62557 tcccttgaagagcacaaaca 62538

to top

>gb|AC131584.7| Mus musculus chromosome 1, clone RP23-215C21, complete sequence
          Length = 197346

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 231   ttgaagagcacaaacatgat 250
             ||||||||||||||||||||
Sbjct: 79901 ttgaagagcacaaacatgat 79882

to top

>emb|CR385047.19| Zebrafish DNA sequence from clone DKEY-221N16 in linkage group 18,
              complete sequence
          Length = 193827

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 169    cggtaaatccagcttgtttg 188
              ||||||||||||||||||||
Sbjct: 173244 cggtaaatccagcttgtttg 173225


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,448,128
Number of Sequences: 3902068
Number of extensions: 4448128
Number of successful extensions: 78099
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77738
Number of HSP's gapped (non-prelim): 353
length of query: 706
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 683
effective length of database: 17,143,297,704
effective search space: 11708872331832
effective search space used: 11708872331832
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result