ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags23f04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF139814.1|AF139814 Triticum aestivum plasma membrane intrins... 313 2e-82
2gb|AF062393.1|AF062393 Oryza sativa aquaporin (PIP2a) mRNA, comp... 96 7e-17
3ref|NM_187092.2| Oryza sativa (japonica cultivar-group), mRNA 88 2e-14
4ref|XM_507363.1| PREDICTED Oryza sativa (japonica cultivar-group... 88 2e-14
5ref|XM_506304.2| PREDICTED Oryza sativa (japonica cultivar-group... 88 2e-14
6gb|BT016583.1| Zea mays clone Contig416 mRNA sequence 88 2e-14
7gb|AY243801.1| Zea mays aquaporin (PIP2-1) mRNA, complete cds 88 2e-14
8dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 88 2e-14
9dbj|AB029446.1| Oryza sativa (indica cultivar-group) rwc-2 mRNA ... 88 2e-14
10dbj|AP003802.2| Oryza sativa (japonica cultivar-group) genomic D... 88 2e-14
11dbj|AK119656.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 2e-14
12dbj|AK105524.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 2e-14
13dbj|AK103970.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 2e-14
14dbj|AK072519.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 2e-14
15gb|AF326492.1|AF326492 Zea mays plasma membrane integral protein... 80 4e-12
16gb|AF326491.1|AF326491 Zea mays plasma membrane integral protein... 80 4e-12
17dbj|AK103938.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 4e-12
18gb|AY109332.1| Zea mays CL502_5 mRNA sequence 80 4e-12
19gb|AY903443.1| Astragalus membranaceus clone AM79 putative plasm... 42 0.96
20ref|XM_475029.1| Oryza sativa (japonica cultivar-group), predic... 40 3.8
21emb|AL731636.3|OSJN00281 Oryza sativa genomic DNA, chromosome 4,... 40 3.8
22emb|AL596209.13| Mouse DNA sequence from clone RP23-278F12 on ch... 40 3.8
23dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
24dbj|AK102155.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.8
25dbj|AK061491.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.8
26dbj|AK061312.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.8

>gb|AF139814.1|AF139814 Triticum aestivum plasma membrane intrinsic protein 1 (PIP1) mRNA,
            complete cds
          Length = 1283

 Score =  313 bits (158), Expect = 2e-82
 Identities = 263/295 (89%), Gaps = 9/295 (3%)
 Strand = Plus / Minus

                                                                        
Query: 3    aatgcggnctaattaagacangcgatcccatggaccgaattacaacacacggcacgcatg 62
            ||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 1180 aatgcgggctaattaagacaagcgatcccatggaccgaattacaagacacggcacgcatg 1121

                                                                        
Query: 63   actgggc-acatnc---gcatatgcagctgncgncacataaataacacgaccattgcagc 118
            || || | || | |   ||||||||||||| || ||||||| ||||||||||||||| ||
Sbjct: 1120 accggaccacgtactacgcatatgcagctgccgacacataa-taacacgaccattgcggc 1062

                                                                        
Query: 119  ggcc-aactgaactgncgagaagttgcaaaagcggctttctctttggatggatggacaca 177
            |||| |||||||||| ||||||||||||||||||  ||||||| ||||||||||||||||
Sbjct: 1061 ggccgaactgaactgtcgagaagttgcaaaagcgcatttctctctggatggatggacaca 1002

                                                                        
Query: 178  gcacaggtcgccattgcttcaatcttgcatgcacatcacatg---gataactcgttacgc 234
             ||| |||||||||||||||| |||||||| || || |||||   ||||||| |||||||
Sbjct: 1001 acacgggtcgccattgcttcagtcttgcatacagatgacatggatgataacttgttacgc 942

                                                                   
Query: 235  gttgctcctgaangagccgagggccttgatggcgccggccctgagtatgtactgg 289
            |||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 941  gttgctcctgaaggagccgagggccttgatggcgccggccctgaggatgtactgg 887



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>gb|AF062393.1|AF062393 Oryza sativa aquaporin (PIP2a) mRNA, complete cds
          Length = 1328

 Score = 95.6 bits (48), Expect = 7e-17
 Identities = 56/59 (94%)
 Strand = Plus / Minus

                                                                      
Query: 231 acgcgttgctcctgaangagccgagggccttgatggcgccggccctgagtatgtactgg 289
           |||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 968 acgcgttgctcctgaaggagccgagggccttgatggcgccggcccggaggatgtactgg 910



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>ref|NM_187092.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1242

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 55/59 (93%)
 Strand = Plus / Minus

                                                                      
Query: 231 acgcgttgctcctgaangagccgagggccttgatggcgccggccctgagtatgtactgg 289
           |||||||||||||||| ||||||||||| |||||||||||||||| ||| |||||||||
Sbjct: 978 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactgg 920



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>ref|XM_507363.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1047_A06.117
           mRNA
          Length = 1257

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 55/59 (93%)
 Strand = Plus / Minus

                                                                      
Query: 231 acgcgttgctcctgaangagccgagggccttgatggcgccggccctgagtatgtactgg 289
           |||||||||||||||| ||||||||||| |||||||||||||||| ||| |||||||||
Sbjct: 980 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactgg 922



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>ref|XM_506304.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1047_A06.117
           mRNA
          Length = 1298

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 55/59 (93%)
 Strand = Plus / Minus

                                                                      
Query: 231 acgcgttgctcctgaangagccgagggccttgatggcgccggccctgagtatgtactgg 289
           |||||||||||||||| ||||||||||| |||||||||||||||| ||| |||||||||
Sbjct: 981 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactgg 923



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>gb|BT016583.1| Zea mays clone Contig416 mRNA sequence
          Length = 1348

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 55/59 (93%)
 Strand = Plus / Minus

                                                                      
Query: 231 acgcgttgctcctgaangagccgagggccttgatggcgccggccctgagtatgtactgg 289
           |||||||||||||||| ||||||||||||||||||||||| |||| ||| |||||||||
Sbjct: 924 acgcgttgctcctgaaggagccgagggccttgatggcgccagcccggaggatgtactgg 866



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>gb|AY243801.1| Zea mays aquaporin (PIP2-1) mRNA, complete cds
          Length = 1133

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 55/59 (93%)
 Strand = Plus / Minus

                                                                      
Query: 231 acgcgttgctcctgaangagccgagggccttgatggcgccggccctgagtatgtactgg 289
           |||||||||||||||| ||||||||||||||||||||||| |||| ||| |||||||||
Sbjct: 872 acgcgttgctcctgaaggagccgagggccttgatggcgccagcccggaggatgtactgg 814



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 55/59 (93%)
 Strand = Plus / Minus

                                                                           
Query: 231      acgcgttgctcctgaangagccgagggccttgatggcgccggccctgagtatgtactgg 289
                |||||||||||||||| ||||||||||| |||||||||||||||| ||| |||||||||
Sbjct: 15355852 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactgg 15355794



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>dbj|AB029446.1| Oryza sativa (indica cultivar-group) rwc-2 mRNA for water channel
           protein, partial cds
          Length = 880

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 55/59 (93%)
 Strand = Plus / Minus

                                                                      
Query: 231 acgcgttgctcctgaangagccgagggccttgatggcgccggccctgagtatgtactgg 289
           |||||||||||||||| ||||||||||||||||||| |||||||| ||| |||||||||
Sbjct: 544 acgcgttgctcctgaaggagccgagggccttgatggggccggcccggaggatgtactgg 486



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>dbj|AP003802.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1047_A06
          Length = 111673

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 55/59 (93%)
 Strand = Plus / Minus

                                                                        
Query: 231   acgcgttgctcctgaangagccgagggccttgatggcgccggccctgagtatgtactgg 289
             |||||||||||||||| ||||||||||| |||||||||||||||| ||| |||||||||
Sbjct: 62851 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactgg 62793



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>dbj|AK119656.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-H04, full
           insert sequence
          Length = 1216

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 55/59 (93%)
 Strand = Plus / Minus

                                                                      
Query: 231 acgcgttgctcctgaangagccgagggccttgatggcgccggccctgagtatgtactgg 289
           |||||||||||||||| ||||||||||| |||||||||||||||| ||| |||||||||
Sbjct: 978 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactgg 920



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>dbj|AK105524.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-G02, full
           insert sequence
          Length = 1451

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 55/59 (93%)
 Strand = Plus / Minus

                                                                      
Query: 231 acgcgttgctcctgaangagccgagggccttgatggcgccggccctgagtatgtactgg 289
           |||||||||||||||| ||||||||||| |||||||||||||||| ||| |||||||||
Sbjct: 572 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactgg 514



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>dbj|AK103970.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-B05, full
           insert sequence
          Length = 1242

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 55/59 (93%)
 Strand = Plus / Minus

                                                                      
Query: 231 acgcgttgctcctgaangagccgagggccttgatggcgccggccctgagtatgtactgg 289
           |||||||||||||||| ||||||||||| |||||||||||||||| ||| |||||||||
Sbjct: 978 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactgg 920



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>dbj|AK072519.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023128K12, full
           insert sequence
          Length = 1298

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 55/59 (93%)
 Strand = Plus / Minus

                                                                      
Query: 231 acgcgttgctcctgaangagccgagggccttgatggcgccggccctgagtatgtactgg 289
           |||||||||||||||| ||||||||||| |||||||||||||||| ||| |||||||||
Sbjct: 981 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactgg 923



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>gb|AF326492.1|AF326492 Zea mays plasma membrane integral protein ZmPIP2-2 mRNA, complete
           cds
          Length = 1268

 Score = 79.8 bits (40), Expect = 4e-12
 Identities = 54/59 (91%)
 Strand = Plus / Minus

                                                                      
Query: 231 acgcgttgctcctgaangagccgagggccttgatggcgccggccctgagtatgtactgg 289
           |||||||||||||||| |||||||| |||||||||||||| |||| ||| |||||||||
Sbjct: 996 acgcgttgctcctgaaggagccgagagccttgatggcgcccgcccggaggatgtactgg 938



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>gb|AF326491.1|AF326491 Zea mays plasma membrane integral protein ZmPIP2-1 mRNA, complete
           cds
          Length = 1171

 Score = 79.8 bits (40), Expect = 4e-12
 Identities = 54/59 (91%)
 Strand = Plus / Minus

                                                                      
Query: 231 acgcgttgctcctgaangagccgagggccttgatggcgccggccctgagtatgtactgg 289
           |||||||||||||||| |||||||||||||||||||| || |||| ||| |||||||||
Sbjct: 943 acgcgttgctcctgaaggagccgagggccttgatggccccagcccggaggatgtactgg 885



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>dbj|AK103938.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-G03, full
           insert sequence
          Length = 1257

 Score = 79.8 bits (40), Expect = 4e-12
 Identities = 54/59 (91%)
 Strand = Plus / Minus

                                                                      
Query: 231 acgcgttgctcctgaangagccgagggccttgatggcgccggccctgagtatgtactgg 289
           |||||||||||||||  ||||||||||| |||||||||||||||| ||| |||||||||
Sbjct: 980 acgcgttgctcctgagggagccgagggctttgatggcgccggcccggaggatgtactgg 922



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>gb|AY109332.1| Zea mays CL502_5 mRNA sequence
          Length = 1969

 Score = 79.8 bits (40), Expect = 4e-12
 Identities = 54/59 (91%)
 Strand = Plus / Minus

                                                                       
Query: 231  acgcgttgctcctgaangagccgagggccttgatggcgccggccctgagtatgtactgg 289
            |||||||||||||||| |||||||| |||||||||||||| |||| ||| |||||||||
Sbjct: 1646 acgcgttgctcctgaaggagccgagagccttgatggcgcccgcccggaggatgtactgg 1588



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>gb|AY903443.1| Astragalus membranaceus clone AM79 putative plasma membrane
           intrinsic protein mRNA, complete cds
          Length = 1120

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 236 ttgctcctgaangagccgagggccttgatggc 267
           ||||||||||| || ||||| |||||||||||
Sbjct: 839 ttgctcctgaaggatccgagagccttgatggc 808



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>ref|XM_475029.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 849

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 46/55 (83%)
 Strand = Plus / Minus

                                                                  
Query: 235 gttgctcctgaangagccgagggccttgatggcgccggccctgagtatgtactgg 289
           |||||||| ||| ||||| || |||||||||||  | |||| ||| |||||||||
Sbjct: 837 gttgctccggaaggagcccagcgccttgatggctgccgcccggaggatgtactgg 783



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>emb|AL731636.3|OSJN00281 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0093G06,
             complete sequence
          Length = 127420

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 46/55 (83%)
 Strand = Plus / Plus

                                                                    
Query: 235   gttgctcctgaangagccgagggccttgatggcgccggccctgagtatgtactgg 289
             |||||||| ||| ||||| || |||||||||||  | |||| ||| |||||||||
Sbjct: 91012 gttgctccggaaggagcccagcgccttgatggctgccgcccggaggatgtactgg 91066



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>emb|AL596209.13| Mouse DNA sequence from clone RP23-278F12 on chromosome 11 Contains the
             3' end of the Ulk2 gene for Unc-51 like kinase 2 (C.
             elegans), the Prpsap2 gene for phosphoribosyl
             pyrophosphate synthetase-associated protein 2, the gene
             for a novel sodium/glucose cotransporter protein, the gene
             for a novel protein (2310040C09Rik), the Grap gene for
             GRB2-related adaptor protein and a CpG island, complete
             sequence
          Length = 186359

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 154   tttctctttggatggatgga 173
             ||||||||||||||||||||
Sbjct: 79799 tttctctttggatggatgga 79818



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 46/55 (83%)
 Strand = Plus / Plus

                                                                      
Query: 235     gttgctcctgaangagccgagggccttgatggcgccggccctgagtatgtactgg 289
               |||||||| ||| ||||| || |||||||||||  | |||| ||| |||||||||
Sbjct: 8906703 gttgctccggaaggagcccagcgccttgatggctgccgcccggaggatgtactgg 8906757



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>dbj|AK102155.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033086E18, full
           insert sequence
          Length = 1308

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 46/55 (83%)
 Strand = Plus / Minus

                                                                  
Query: 235 gttgctcctgaangagccgagggccttgatggcgccggccctgagtatgtactgg 289
           |||||||| ||| ||||| || |||||||||||  | |||| ||| |||||||||
Sbjct: 936 gttgctccggaaggagcccagcgccttgatggctgccgcccggaggatgtactgg 882



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>dbj|AK061491.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-B05, full
           insert sequence
          Length = 1309

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 46/55 (83%)
 Strand = Plus / Minus

                                                                  
Query: 235 gttgctcctgaangagccgagggccttgatggcgccggccctgagtatgtactgg 289
           |||||||| ||| ||||| || |||||||||||  | |||| ||| |||||||||
Sbjct: 930 gttgctccggaaggagcccagcgccttgatggctgccgcccggaggatgtactgg 876



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>dbj|AK061312.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-B10, full
           insert sequence
          Length = 1296

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 46/55 (83%)
 Strand = Plus / Minus

                                                                  
Query: 235 gttgctcctgaangagccgagggccttgatggcgccggccctgagtatgtactgg 289
           |||||||| ||| ||||| || |||||||||||  | |||| ||| |||||||||
Sbjct: 924 gttgctccggaaggagcccagcgccttgatggctgccgcccggaggatgtactgg 870


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,868,795
Number of Sequences: 3902068
Number of extensions: 1868795
Number of successful extensions: 27393
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27332
Number of HSP's gapped (non-prelim): 58
length of query: 289
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 267
effective length of database: 17,147,199,772
effective search space: 4578302339124
effective search space used: 4578302339124
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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