| Clone Name | rbags23f04 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF139814.1|AF139814 Triticum aestivum plasma membrane intrinsic protein 1 (PIP1) mRNA, complete cds Length = 1283 Score = 313 bits (158), Expect = 2e-82 Identities = 263/295 (89%), Gaps = 9/295 (3%) Strand = Plus / Minus Query: 3 aatgcggnctaattaagacangcgatcccatggaccgaattacaacacacggcacgcatg 62 ||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct: 1180 aatgcgggctaattaagacaagcgatcccatggaccgaattacaagacacggcacgcatg 1121 Query: 63 actgggc-acatnc---gcatatgcagctgncgncacataaataacacgaccattgcagc 118 || || | || | | ||||||||||||| || ||||||| ||||||||||||||| || Sbjct: 1120 accggaccacgtactacgcatatgcagctgccgacacataa-taacacgaccattgcggc 1062 Query: 119 ggcc-aactgaactgncgagaagttgcaaaagcggctttctctttggatggatggacaca 177 |||| |||||||||| |||||||||||||||||| ||||||| |||||||||||||||| Sbjct: 1061 ggccgaactgaactgtcgagaagttgcaaaagcgcatttctctctggatggatggacaca 1002 Query: 178 gcacaggtcgccattgcttcaatcttgcatgcacatcacatg---gataactcgttacgc 234 ||| |||||||||||||||| |||||||| || || ||||| ||||||| ||||||| Sbjct: 1001 acacgggtcgccattgcttcagtcttgcatacagatgacatggatgataacttgttacgc 942 Query: 235 gttgctcctgaangagccgagggccttgatggcgccggccctgagtatgtactgg 289 |||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct: 941 gttgctcctgaaggagccgagggccttgatggcgccggccctgaggatgtactgg 887
>gb|AF062393.1|AF062393 Oryza sativa aquaporin (PIP2a) mRNA, complete cds Length = 1328 Score = 95.6 bits (48), Expect = 7e-17 Identities = 56/59 (94%) Strand = Plus / Minus Query: 231 acgcgttgctcctgaangagccgagggccttgatggcgccggccctgagtatgtactgg 289 |||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||| Sbjct: 968 acgcgttgctcctgaaggagccgagggccttgatggcgccggcccggaggatgtactgg 910
>ref|NM_187092.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1242 Score = 87.7 bits (44), Expect = 2e-14 Identities = 55/59 (93%) Strand = Plus / Minus Query: 231 acgcgttgctcctgaangagccgagggccttgatggcgccggccctgagtatgtactgg 289 |||||||||||||||| ||||||||||| |||||||||||||||| ||| ||||||||| Sbjct: 978 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactgg 920
>ref|XM_507363.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1047_A06.117 mRNA Length = 1257 Score = 87.7 bits (44), Expect = 2e-14 Identities = 55/59 (93%) Strand = Plus / Minus Query: 231 acgcgttgctcctgaangagccgagggccttgatggcgccggccctgagtatgtactgg 289 |||||||||||||||| ||||||||||| |||||||||||||||| ||| ||||||||| Sbjct: 980 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactgg 922
>ref|XM_506304.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1047_A06.117 mRNA Length = 1298 Score = 87.7 bits (44), Expect = 2e-14 Identities = 55/59 (93%) Strand = Plus / Minus Query: 231 acgcgttgctcctgaangagccgagggccttgatggcgccggccctgagtatgtactgg 289 |||||||||||||||| ||||||||||| |||||||||||||||| ||| ||||||||| Sbjct: 981 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactgg 923
>gb|BT016583.1| Zea mays clone Contig416 mRNA sequence Length = 1348 Score = 87.7 bits (44), Expect = 2e-14 Identities = 55/59 (93%) Strand = Plus / Minus Query: 231 acgcgttgctcctgaangagccgagggccttgatggcgccggccctgagtatgtactgg 289 |||||||||||||||| ||||||||||||||||||||||| |||| ||| ||||||||| Sbjct: 924 acgcgttgctcctgaaggagccgagggccttgatggcgccagcccggaggatgtactgg 866
>gb|AY243801.1| Zea mays aquaporin (PIP2-1) mRNA, complete cds Length = 1133 Score = 87.7 bits (44), Expect = 2e-14 Identities = 55/59 (93%) Strand = Plus / Minus Query: 231 acgcgttgctcctgaangagccgagggccttgatggcgccggccctgagtatgtactgg 289 |||||||||||||||| ||||||||||||||||||||||| |||| ||| ||||||||| Sbjct: 872 acgcgttgctcctgaaggagccgagggccttgatggcgccagcccggaggatgtactgg 814
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 87.7 bits (44), Expect = 2e-14 Identities = 55/59 (93%) Strand = Plus / Minus Query: 231 acgcgttgctcctgaangagccgagggccttgatggcgccggccctgagtatgtactgg 289 |||||||||||||||| ||||||||||| |||||||||||||||| ||| ||||||||| Sbjct: 15355852 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactgg 15355794
>dbj|AB029446.1| Oryza sativa (indica cultivar-group) rwc-2 mRNA for water channel protein, partial cds Length = 880 Score = 87.7 bits (44), Expect = 2e-14 Identities = 55/59 (93%) Strand = Plus / Minus Query: 231 acgcgttgctcctgaangagccgagggccttgatggcgccggccctgagtatgtactgg 289 |||||||||||||||| ||||||||||||||||||| |||||||| ||| ||||||||| Sbjct: 544 acgcgttgctcctgaaggagccgagggccttgatggggccggcccggaggatgtactgg 486
>dbj|AP003802.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1047_A06 Length = 111673 Score = 87.7 bits (44), Expect = 2e-14 Identities = 55/59 (93%) Strand = Plus / Minus Query: 231 acgcgttgctcctgaangagccgagggccttgatggcgccggccctgagtatgtactgg 289 |||||||||||||||| ||||||||||| |||||||||||||||| ||| ||||||||| Sbjct: 62851 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactgg 62793
>dbj|AK119656.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-H04, full insert sequence Length = 1216 Score = 87.7 bits (44), Expect = 2e-14 Identities = 55/59 (93%) Strand = Plus / Minus Query: 231 acgcgttgctcctgaangagccgagggccttgatggcgccggccctgagtatgtactgg 289 |||||||||||||||| ||||||||||| |||||||||||||||| ||| ||||||||| Sbjct: 978 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactgg 920
>dbj|AK105524.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-G02, full insert sequence Length = 1451 Score = 87.7 bits (44), Expect = 2e-14 Identities = 55/59 (93%) Strand = Plus / Minus Query: 231 acgcgttgctcctgaangagccgagggccttgatggcgccggccctgagtatgtactgg 289 |||||||||||||||| ||||||||||| |||||||||||||||| ||| ||||||||| Sbjct: 572 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactgg 514
>dbj|AK103970.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-B05, full insert sequence Length = 1242 Score = 87.7 bits (44), Expect = 2e-14 Identities = 55/59 (93%) Strand = Plus / Minus Query: 231 acgcgttgctcctgaangagccgagggccttgatggcgccggccctgagtatgtactgg 289 |||||||||||||||| ||||||||||| |||||||||||||||| ||| ||||||||| Sbjct: 978 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactgg 920
>dbj|AK072519.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023128K12, full insert sequence Length = 1298 Score = 87.7 bits (44), Expect = 2e-14 Identities = 55/59 (93%) Strand = Plus / Minus Query: 231 acgcgttgctcctgaangagccgagggccttgatggcgccggccctgagtatgtactgg 289 |||||||||||||||| ||||||||||| |||||||||||||||| ||| ||||||||| Sbjct: 981 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactgg 923
>gb|AF326492.1|AF326492 Zea mays plasma membrane integral protein ZmPIP2-2 mRNA, complete cds Length = 1268 Score = 79.8 bits (40), Expect = 4e-12 Identities = 54/59 (91%) Strand = Plus / Minus Query: 231 acgcgttgctcctgaangagccgagggccttgatggcgccggccctgagtatgtactgg 289 |||||||||||||||| |||||||| |||||||||||||| |||| ||| ||||||||| Sbjct: 996 acgcgttgctcctgaaggagccgagagccttgatggcgcccgcccggaggatgtactgg 938
>gb|AF326491.1|AF326491 Zea mays plasma membrane integral protein ZmPIP2-1 mRNA, complete cds Length = 1171 Score = 79.8 bits (40), Expect = 4e-12 Identities = 54/59 (91%) Strand = Plus / Minus Query: 231 acgcgttgctcctgaangagccgagggccttgatggcgccggccctgagtatgtactgg 289 |||||||||||||||| |||||||||||||||||||| || |||| ||| ||||||||| Sbjct: 943 acgcgttgctcctgaaggagccgagggccttgatggccccagcccggaggatgtactgg 885
>dbj|AK103938.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-G03, full insert sequence Length = 1257 Score = 79.8 bits (40), Expect = 4e-12 Identities = 54/59 (91%) Strand = Plus / Minus Query: 231 acgcgttgctcctgaangagccgagggccttgatggcgccggccctgagtatgtactgg 289 ||||||||||||||| ||||||||||| |||||||||||||||| ||| ||||||||| Sbjct: 980 acgcgttgctcctgagggagccgagggctttgatggcgccggcccggaggatgtactgg 922
>gb|AY109332.1| Zea mays CL502_5 mRNA sequence Length = 1969 Score = 79.8 bits (40), Expect = 4e-12 Identities = 54/59 (91%) Strand = Plus / Minus Query: 231 acgcgttgctcctgaangagccgagggccttgatggcgccggccctgagtatgtactgg 289 |||||||||||||||| |||||||| |||||||||||||| |||| ||| ||||||||| Sbjct: 1646 acgcgttgctcctgaaggagccgagagccttgatggcgcccgcccggaggatgtactgg 1588
>gb|AY903443.1| Astragalus membranaceus clone AM79 putative plasma membrane intrinsic protein mRNA, complete cds Length = 1120 Score = 42.1 bits (21), Expect = 0.96 Identities = 29/32 (90%) Strand = Plus / Minus Query: 236 ttgctcctgaangagccgagggccttgatggc 267 ||||||||||| || ||||| ||||||||||| Sbjct: 839 ttgctcctgaaggatccgagagccttgatggc 808
>ref|XM_475029.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 849 Score = 40.1 bits (20), Expect = 3.8 Identities = 46/55 (83%) Strand = Plus / Minus Query: 235 gttgctcctgaangagccgagggccttgatggcgccggccctgagtatgtactgg 289 |||||||| ||| ||||| || ||||||||||| | |||| ||| ||||||||| Sbjct: 837 gttgctccggaaggagcccagcgccttgatggctgccgcccggaggatgtactgg 783
>emb|AL731636.3|OSJN00281 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0093G06, complete sequence Length = 127420 Score = 40.1 bits (20), Expect = 3.8 Identities = 46/55 (83%) Strand = Plus / Plus Query: 235 gttgctcctgaangagccgagggccttgatggcgccggccctgagtatgtactgg 289 |||||||| ||| ||||| || ||||||||||| | |||| ||| ||||||||| Sbjct: 91012 gttgctccggaaggagcccagcgccttgatggctgccgcccggaggatgtactgg 91066
>emb|AL596209.13| Mouse DNA sequence from clone RP23-278F12 on chromosome 11 Contains the 3' end of the Ulk2 gene for Unc-51 like kinase 2 (C. elegans), the Prpsap2 gene for phosphoribosyl pyrophosphate synthetase-associated protein 2, the gene for a novel sodium/glucose cotransporter protein, the gene for a novel protein (2310040C09Rik), the Grap gene for GRB2-related adaptor protein and a CpG island, complete sequence Length = 186359 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 tttctctttggatggatgga 173 |||||||||||||||||||| Sbjct: 79799 tttctctttggatggatgga 79818
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 3.8 Identities = 46/55 (83%) Strand = Plus / Plus Query: 235 gttgctcctgaangagccgagggccttgatggcgccggccctgagtatgtactgg 289 |||||||| ||| ||||| || ||||||||||| | |||| ||| ||||||||| Sbjct: 8906703 gttgctccggaaggagcccagcgccttgatggctgccgcccggaggatgtactgg 8906757
>dbj|AK102155.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033086E18, full insert sequence Length = 1308 Score = 40.1 bits (20), Expect = 3.8 Identities = 46/55 (83%) Strand = Plus / Minus Query: 235 gttgctcctgaangagccgagggccttgatggcgccggccctgagtatgtactgg 289 |||||||| ||| ||||| || ||||||||||| | |||| ||| ||||||||| Sbjct: 936 gttgctccggaaggagcccagcgccttgatggctgccgcccggaggatgtactgg 882
>dbj|AK061491.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-B05, full insert sequence Length = 1309 Score = 40.1 bits (20), Expect = 3.8 Identities = 46/55 (83%) Strand = Plus / Minus Query: 235 gttgctcctgaangagccgagggccttgatggcgccggccctgagtatgtactgg 289 |||||||| ||| ||||| || ||||||||||| | |||| ||| ||||||||| Sbjct: 930 gttgctccggaaggagcccagcgccttgatggctgccgcccggaggatgtactgg 876
>dbj|AK061312.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-B10, full insert sequence Length = 1296 Score = 40.1 bits (20), Expect = 3.8 Identities = 46/55 (83%) Strand = Plus / Minus Query: 235 gttgctcctgaangagccgagggccttgatggcgccggccctgagtatgtactgg 289 |||||||| ||| ||||| || ||||||||||| | |||| ||| ||||||||| Sbjct: 924 gttgctccggaaggagcccagcgccttgatggctgccgcccggaggatgtactgg 870 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,868,795 Number of Sequences: 3902068 Number of extensions: 1868795 Number of successful extensions: 27393 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 27332 Number of HSP's gapped (non-prelim): 58 length of query: 289 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 267 effective length of database: 17,147,199,772 effective search space: 4578302339124 effective search space used: 4578302339124 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)