ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal1b02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF216582.1|AF216582 Avena sativa fructose 1,6-bisphosphate al... 151 1e-33
2gb|AY103557.1| Zea mays PCO070710 mRNA sequence 50 0.003
3dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.011
4gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 48 0.011
5emb|AL954825.3|CNS08CD1 Oryza sativa chromosome 12, . BAC OJ2007... 48 0.011
6gb|AC126611.3| Mus musculus BAC clone RP23-316N22 from chromosom... 44 0.18
7gb|AC134244.4| Mus musculus BAC clone RP24-218O13 from 14, compl... 44 0.18
8gb|AC128643.3| Oryza sativa (japonica cultivar-group) chromosome... 40 2.8
9dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.8
10gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 40 2.8
11dbj|AK104899.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.8
12dbj|AK073758.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.8
13gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 2.8
14gb|AF017362.1|AF017362 Oryza sativa aldolase mRNA, complete cds 40 2.8
15dbj|D13513.1|RICCHLALD Oryza sativa gene for cytoplasmic aldolas... 40 2.8

>gb|AF216582.1|AF216582 Avena sativa fructose 1,6-bisphosphate aldolase precursor, mRNA,
            complete cds; nuclear gene for chloroplast product
          Length = 1577

 Score =  151 bits (76), Expect = 1e-33
 Identities = 95/100 (95%), Gaps = 1/100 (1%)
 Strand = Plus / Minus

                                                                        
Query: 42   gtccatctcttcctcagagctggtctcgacctgtaa-caacgacgacacactggctggct 100
            |||||||||| | ||||||||||||||||||||||| |||||| ||||||||| ||||||
Sbjct: 1400 gtccatctctccatcagagctggtctcgacctgtaaacaacgaggacacactgcctggct 1341

                                                    
Query: 101  aaggtgccctcaagctgctcaaggcgctactagcactctc 140
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1340 aaggtgccctcaagctgctcaaggcgctactagcactctc 1301



 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 30/30 (100%)
 Strand = Plus / Minus

                                          
Query: 182  gatcagtagctgtagttcttgacgaacatg 211
            ||||||||||||||||||||||||||||||
Sbjct: 1267 gatcagtagctgtagttcttgacgaacatg 1238



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>gb|AY103557.1| Zea mays PCO070710 mRNA sequence
          Length = 1761

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 186  agtagctgtagttcttgacgaacat 210
            |||||||||||||||||||||||||
Sbjct: 1404 agtagctgtagttcttgacgaacat 1380



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 48.1 bits (24), Expect = 0.011
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                           
Query: 184     tcagtagctgtagttcttgacgaacatg 211
               ||||||| ||||||||||||||||||||
Sbjct: 3543513 tcagtaggtgtagttcttgacgaacatg 3543486



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 48.1 bits (24), Expect = 0.011
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                           
Query: 184     tcagtagctgtagttcttgacgaacatg 211
               ||||||| ||||||||||||||||||||
Sbjct: 3543458 tcagtaggtgtagttcttgacgaacatg 3543431



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>emb|AL954825.3|CNS08CD1 Oryza sativa chromosome 12, . BAC OJ2007_H06 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 103647

 Score = 48.1 bits (24), Expect = 0.011
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 184   tcagtagctgtagttcttgacgaacatg 211
             ||||||| ||||||||||||||||||||
Sbjct: 58441 tcagtaggtgtagttcttgacgaacatg 58414



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>gb|AC126611.3| Mus musculus BAC clone RP23-316N22 from chromosome 14, complete
             sequence
          Length = 177469

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 37    tctccgtccatctcttcctcagagct 62
             ||||| ||||||||||||||||||||
Sbjct: 24746 tctccatccatctcttcctcagagct 24771



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>gb|AC134244.4| Mus musculus BAC clone RP24-218O13 from 14, complete sequence
          Length = 220538

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 37     tctccgtccatctcttcctcagagct 62
              ||||| ||||||||||||||||||||
Sbjct: 195521 tctccatccatctcttcctcagagct 195546



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>gb|AC128643.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0007B15 map S10318, complete sequence
          Length = 125243

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 180   cggatcagtagctgtagttcttgacgaacatg 211
             ||||| |||||  |||||||||||||||||||
Sbjct: 63349 cggattagtagacgtagttcttgacgaacatg 63380



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 180     cggatcagtagctgtagttcttgacgaacatg 211
               ||||| |||||  |||||||||||||||||||
Sbjct: 3469394 cggattagtagacgtagttcttgacgaacatg 3469425



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>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 105     tgccctcaagctgctcaagg 124
               ||||||||||||||||||||
Sbjct: 2164719 tgccctcaagctgctcaagg 2164738



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>dbj|AK104899.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-C04, full
            insert sequence
          Length = 1492

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 180  cggatcagtagctgtagttcttgacgaacatg 211
            ||||| |||||  |||||||||||||||||||
Sbjct: 1265 cggattagtagacgtagttcttgacgaacatg 1234



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>dbj|AK073758.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068O18, full
            insert sequence
          Length = 1622

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 180  cggatcagtagctgtagttcttgacgaacatg 211
            ||||| |||||  |||||||||||||||||||
Sbjct: 1261 cggattagtagacgtagttcttgacgaacatg 1230



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 180     cggatcagtagctgtagttcttgacgaacatg 211
               ||||| |||||  |||||||||||||||||||
Sbjct: 3478098 cggattagtagacgtagttcttgacgaacatg 3478129



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>gb|AF017362.1|AF017362 Oryza sativa aldolase mRNA, complete cds
          Length = 1302

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 180  cggatcagtagctgtagttcttgacgaacatg 211
            ||||| |||||  |||||||||||||||||||
Sbjct: 1157 cggattagtagacgtagttcttgacgaacatg 1126



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>dbj|D13513.1|RICCHLALD Oryza sativa gene for cytoplasmic aldolase, complete cds, clone:Aldp
          Length = 2915

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 180  cggatcagtagctgtagttcttgacgaacatg 211
            ||||| |||||  |||||||||||||||||||
Sbjct: 2793 cggattagtagacgtagttcttgacgaacatg 2762


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,554,847
Number of Sequences: 3902068
Number of extensions: 1554847
Number of successful extensions: 93710
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93519
Number of HSP's gapped (non-prelim): 190
length of query: 219
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 197
effective length of database: 17,147,199,772
effective search space: 3377998355084
effective search space used: 3377998355084
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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