| Clone Name | rbaal1b02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF216582.1|AF216582 Avena sativa fructose 1,6-bisphosphate aldolase precursor, mRNA, complete cds; nuclear gene for chloroplast product Length = 1577 Score = 151 bits (76), Expect = 1e-33 Identities = 95/100 (95%), Gaps = 1/100 (1%) Strand = Plus / Minus Query: 42 gtccatctcttcctcagagctggtctcgacctgtaa-caacgacgacacactggctggct 100 |||||||||| | ||||||||||||||||||||||| |||||| ||||||||| |||||| Sbjct: 1400 gtccatctctccatcagagctggtctcgacctgtaaacaacgaggacacactgcctggct 1341 Query: 101 aaggtgccctcaagctgctcaaggcgctactagcactctc 140 |||||||||||||||||||||||||||||||||||||||| Sbjct: 1340 aaggtgccctcaagctgctcaaggcgctactagcactctc 1301 Score = 60.0 bits (30), Expect = 3e-06 Identities = 30/30 (100%) Strand = Plus / Minus Query: 182 gatcagtagctgtagttcttgacgaacatg 211 |||||||||||||||||||||||||||||| Sbjct: 1267 gatcagtagctgtagttcttgacgaacatg 1238
>gb|AY103557.1| Zea mays PCO070710 mRNA sequence Length = 1761 Score = 50.1 bits (25), Expect = 0.003 Identities = 25/25 (100%) Strand = Plus / Minus Query: 186 agtagctgtagttcttgacgaacat 210 ||||||||||||||||||||||||| Sbjct: 1404 agtagctgtagttcttgacgaacat 1380
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 48.1 bits (24), Expect = 0.011 Identities = 27/28 (96%) Strand = Plus / Minus Query: 184 tcagtagctgtagttcttgacgaacatg 211 ||||||| |||||||||||||||||||| Sbjct: 3543513 tcagtaggtgtagttcttgacgaacatg 3543486
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 48.1 bits (24), Expect = 0.011 Identities = 27/28 (96%) Strand = Plus / Minus Query: 184 tcagtagctgtagttcttgacgaacatg 211 ||||||| |||||||||||||||||||| Sbjct: 3543458 tcagtaggtgtagttcttgacgaacatg 3543431
>emb|AL954825.3|CNS08CD1 Oryza sativa chromosome 12, . BAC OJ2007_H06 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 103647 Score = 48.1 bits (24), Expect = 0.011 Identities = 27/28 (96%) Strand = Plus / Minus Query: 184 tcagtagctgtagttcttgacgaacatg 211 ||||||| |||||||||||||||||||| Sbjct: 58441 tcagtaggtgtagttcttgacgaacatg 58414
>gb|AC126611.3| Mus musculus BAC clone RP23-316N22 from chromosome 14, complete sequence Length = 177469 Score = 44.1 bits (22), Expect = 0.18 Identities = 25/26 (96%) Strand = Plus / Plus Query: 37 tctccgtccatctcttcctcagagct 62 ||||| |||||||||||||||||||| Sbjct: 24746 tctccatccatctcttcctcagagct 24771
>gb|AC134244.4| Mus musculus BAC clone RP24-218O13 from 14, complete sequence Length = 220538 Score = 44.1 bits (22), Expect = 0.18 Identities = 25/26 (96%) Strand = Plus / Plus Query: 37 tctccgtccatctcttcctcagagct 62 ||||| |||||||||||||||||||| Sbjct: 195521 tctccatccatctcttcctcagagct 195546
>gb|AC128643.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0007B15 map S10318, complete sequence Length = 125243 Score = 40.1 bits (20), Expect = 2.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 180 cggatcagtagctgtagttcttgacgaacatg 211 ||||| ||||| ||||||||||||||||||| Sbjct: 63349 cggattagtagacgtagttcttgacgaacatg 63380
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 2.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 180 cggatcagtagctgtagttcttgacgaacatg 211 ||||| ||||| ||||||||||||||||||| Sbjct: 3469394 cggattagtagacgtagttcttgacgaacatg 3469425
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 tgccctcaagctgctcaagg 124 |||||||||||||||||||| Sbjct: 2164719 tgccctcaagctgctcaagg 2164738
>dbj|AK104899.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-C04, full insert sequence Length = 1492 Score = 40.1 bits (20), Expect = 2.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 180 cggatcagtagctgtagttcttgacgaacatg 211 ||||| ||||| ||||||||||||||||||| Sbjct: 1265 cggattagtagacgtagttcttgacgaacatg 1234
>dbj|AK073758.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068O18, full insert sequence Length = 1622 Score = 40.1 bits (20), Expect = 2.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 180 cggatcagtagctgtagttcttgacgaacatg 211 ||||| ||||| ||||||||||||||||||| Sbjct: 1261 cggattagtagacgtagttcttgacgaacatg 1230
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 2.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 180 cggatcagtagctgtagttcttgacgaacatg 211 ||||| ||||| ||||||||||||||||||| Sbjct: 3478098 cggattagtagacgtagttcttgacgaacatg 3478129
>gb|AF017362.1|AF017362 Oryza sativa aldolase mRNA, complete cds Length = 1302 Score = 40.1 bits (20), Expect = 2.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 180 cggatcagtagctgtagttcttgacgaacatg 211 ||||| ||||| ||||||||||||||||||| Sbjct: 1157 cggattagtagacgtagttcttgacgaacatg 1126
>dbj|D13513.1|RICCHLALD Oryza sativa gene for cytoplasmic aldolase, complete cds, clone:Aldp Length = 2915 Score = 40.1 bits (20), Expect = 2.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 180 cggatcagtagctgtagttcttgacgaacatg 211 ||||| ||||| ||||||||||||||||||| Sbjct: 2793 cggattagtagacgtagttcttgacgaacatg 2762 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,554,847 Number of Sequences: 3902068 Number of extensions: 1554847 Number of successful extensions: 93710 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 93519 Number of HSP's gapped (non-prelim): 190 length of query: 219 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 197 effective length of database: 17,147,199,772 effective search space: 3377998355084 effective search space used: 3377998355084 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)