ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags23f02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC133450.6| Oryza sativa chromosome 3 BAC OSJNBa0072F13 genomic sequence, complete sequence Length = 150743 Score = 236 bits (119), Expect = 8e-59 Identities = 248/291 (85%) Strand = Plus / Minus Query: 121 taacgcttggagaactgggggcgcttgcgcgccttcttgagacccgccttcttcctctcg 180 |||||||| |||||||| ||||||||||| |||||||| ||||| ||||||||||| || Sbjct: 138934 taacgctttgagaactgcgggcgcttgcgtgccttcttaagaccagccttcttcctttca 138875 Query: 181 acgacacgagtgtctcttgtcagcaagccttctgacctcagggggactctgttggcgggg 240 || | ||| ||||||||||||||||| |||||| |||||| | ||| |||| |||| | Sbjct: 138874 actatacgggtgtctcttgtcagcaaaccttctcccctcagagtaactttgtttgcggtg 138815 Query: 241 ctgatcttcagcagcgcacgcgccacgccgaggcagatcgcctgggcctggcctgaaagg 300 |||||||||| ||| ||||| || ||||||||||| || |||||||| ||||| || || Sbjct: 138814 ctgatcttcaccagtgcacgggcgacgccgaggcaaatggcctgggcttggcccgagaga 138755 Query: 301 ccgcctccctgaactttcacgaagacgtcgtagttgttctcaaaccctagagtcgccagg 360 || || || |||||||| ||||||||||||||| ||||||| |||||||| ||| ||||| Sbjct: 138754 ccacccccgtgaactttgacgaagacgtcgtagctgttctcgaaccctagggtcaccagg 138695 Query: 361 gggatcttgcaatactccacccacattggattcccttgcagatactcctgc 411 || | |||||| ||||||| |||||||||||| ||||||| |||||||||| Sbjct: 138694 ggtaccttgcagtactccatccacattggatttccttgcaaatactcctgc 138644
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 236 bits (119), Expect = 8e-59 Identities = 248/291 (85%) Strand = Plus / Plus Query: 121 taacgcttggagaactgggggcgcttgcgcgccttcttgagacccgccttcttcctctcg 180 |||||||| |||||||| ||||||||||| |||||||| ||||| ||||||||||| || Sbjct: 31541733 taacgctttgagaactgcgggcgcttgcgtgccttcttaagaccagccttcttcctttca 31541792 Query: 181 acgacacgagtgtctcttgtcagcaagccttctgacctcagggggactctgttggcgggg 240 || | ||| ||||||||||||||||| |||||| |||||| | ||| |||| |||| | Sbjct: 31541793 actatacgggtgtctcttgtcagcaaaccttctcccctcagagtaactttgtttgcggtg 31541852 Query: 241 ctgatcttcagcagcgcacgcgccacgccgaggcagatcgcctgggcctggcctgaaagg 300 |||||||||| ||| ||||| || ||||||||||| || |||||||| ||||| || || Sbjct: 31541853 ctgatcttcaccagtgcacgggcgacgccgaggcaaatggcctgggcttggcccgagaga 31541912 Query: 301 ccgcctccctgaactttcacgaagacgtcgtagttgttctcaaaccctagagtcgccagg 360 || || || |||||||| ||||||||||||||| ||||||| |||||||| ||| ||||| Sbjct: 31541913 ccacccccgtgaactttgacgaagacgtcgtagctgttctcgaaccctagggtcaccagg 31541972 Query: 361 gggatcttgcaatactccacccacattggattcccttgcagatactcctgc 411 || | |||||| ||||||| |||||||||||| ||||||| |||||||||| Sbjct: 31541973 ggtaccttgcagtactccatccacattggatttccttgcaaatactcctgc 31542023
>gb|AC107207.9| Oryza sativa chromosome 3 BAC OSJNBb0106M04 genomic sequence, complete sequence Length = 133449 Score = 236 bits (119), Expect = 8e-59 Identities = 248/291 (85%) Strand = Plus / Minus Query: 121 taacgcttggagaactgggggcgcttgcgcgccttcttgagacccgccttcttcctctcg 180 |||||||| |||||||| ||||||||||| |||||||| ||||| ||||||||||| || Sbjct: 50873 taacgctttgagaactgcgggcgcttgcgtgccttcttaagaccagccttcttcctttca 50814 Query: 181 acgacacgagtgtctcttgtcagcaagccttctgacctcagggggactctgttggcgggg 240 || | ||| ||||||||||||||||| |||||| |||||| | ||| |||| |||| | Sbjct: 50813 actatacgggtgtctcttgtcagcaaaccttctcccctcagagtaactttgtttgcggtg 50754 Query: 241 ctgatcttcagcagcgcacgcgccacgccgaggcagatcgcctgggcctggcctgaaagg 300 |||||||||| ||| ||||| || ||||||||||| || |||||||| ||||| || || Sbjct: 50753 ctgatcttcaccagtgcacgggcgacgccgaggcaaatggcctgggcttggcccgagaga 50694 Query: 301 ccgcctccctgaactttcacgaagacgtcgtagttgttctcaaaccctagagtcgccagg 360 || || || |||||||| ||||||||||||||| ||||||| |||||||| ||| ||||| Sbjct: 50693 ccacccccgtgaactttgacgaagacgtcgtagctgttctcgaaccctagggtcaccagg 50634 Query: 361 gggatcttgcaatactccacccacattggattcccttgcagatactcctgc 411 || | |||||| ||||||| |||||||||||| ||||||| |||||||||| Sbjct: 50633 ggtaccttgcagtactccatccacattggatttccttgcaaatactcctgc 50583
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 236 bits (119), Expect = 8e-59 Identities = 248/291 (85%) Strand = Plus / Plus Query: 121 taacgcttggagaactgggggcgcttgcgcgccttcttgagacccgccttcttcctctcg 180 |||||||| |||||||| ||||||||||| |||||||| ||||| ||||||||||| || Sbjct: 31632239 taacgctttgagaactgcgggcgcttgcgtgccttcttaagaccagccttcttcctttca 31632298 Query: 181 acgacacgagtgtctcttgtcagcaagccttctgacctcagggggactctgttggcgggg 240 || | ||| ||||||||||||||||| |||||| |||||| | ||| |||| |||| | Sbjct: 31632299 actatacgggtgtctcttgtcagcaaaccttctcccctcagagtaactttgtttgcggtg 31632358 Query: 241 ctgatcttcagcagcgcacgcgccacgccgaggcagatcgcctgggcctggcctgaaagg 300 |||||||||| ||| ||||| || ||||||||||| || |||||||| ||||| || || Sbjct: 31632359 ctgatcttcaccagtgcacgggcgacgccgaggcaaatggcctgggcttggcccgagaga 31632418 Query: 301 ccgcctccctgaactttcacgaagacgtcgtagttgttctcaaaccctagagtcgccagg 360 || || || |||||||| ||||||||||||||| ||||||| |||||||| ||| ||||| Sbjct: 31632419 ccacccccgtgaactttgacgaagacgtcgtagctgttctcgaaccctagggtcaccagg 31632478 Query: 361 gggatcttgcaatactccacccacattggattcccttgcagatactcctgc 411 || | |||||| ||||||| |||||||||||| ||||||| |||||||||| Sbjct: 31632479 ggtaccttgcagtactccatccacattggatttccttgcaaatactcctgc 31632529
>dbj|AK104434.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-D02, full insert sequence Length = 895 Score = 232 bits (117), Expect = 1e-57 Identities = 246/289 (85%) Strand = Plus / Minus Query: 121 taacgcttggagaactgggggcgcttgcgcgccttcttgagacccgccttcttcctctcg 180 |||||||| |||||||| ||||||||||| |||||||| ||||| ||||||||||| || Sbjct: 727 taacgctttgagaactgcgggcgcttgcgtgccttcttaagaccagccttcttcctttca 668 Query: 181 acgacacgagtgtctcttgtcagcaagccttctgacctcagggggactctgttggcgggg 240 || | ||| ||||||||||||||||| |||||| |||||| | ||| |||| |||| | Sbjct: 667 actatacgggtgtctcttgtcagcaaaccttctcccctcagagtaactttgtttgcggtg 608 Query: 241 ctgatcttcagcagcgcacgcgccacgccgaggcagatcgcctgggcctggcctgaaagg 300 |||||||||| ||| ||||| || ||||||||||| || |||||||| ||||| || || Sbjct: 607 ctgatcttcaccagtgcacgggcgacgccgaggcaaatggcctgggcttggcccgagaga 548 Query: 301 ccgcctccctgaactttcacgaagacgtcgtagttgttctcaaaccctagagtcgccagg 360 || || || |||||||| ||||||||||||||| ||||||| |||||||| ||| ||||| Sbjct: 547 ccacccccgtgaactttgacgaagacgtcgtagctgttctcgaaccctagggtcaccagg 488 Query: 361 gggatcttgcaatactccacccacattggattcccttgcagatactcct 409 || | |||||| ||||||| |||||||||||| ||||||| |||||||| Sbjct: 487 ggtaccttgcagtactccatccacattggatttccttgcaaatactcct 439
>dbj|AK068283.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013146D21, full insert sequence Length = 914 Score = 232 bits (117), Expect = 1e-57 Identities = 246/289 (85%) Strand = Plus / Minus Query: 121 taacgcttggagaactgggggcgcttgcgcgccttcttgagacccgccttcttcctctcg 180 |||||||| |||||||| ||||||||||| |||||||| ||||| ||||||||||| || Sbjct: 734 taacgctttgagaactgcgggcgcttgcgtgccttcttaagaccagccttcttcctttca 675 Query: 181 acgacacgagtgtctcttgtcagcaagccttctgacctcagggggactctgttggcgggg 240 || | ||| ||||||||||||||||| |||||| |||||| | ||| |||| |||| | Sbjct: 674 actatacgggtgtctcttgtcagcaaaccttctcccctcagagtaactttgtttgcggtg 615 Query: 241 ctgatcttcagcagcgcacgcgccacgccgaggcagatcgcctgggcctggcctgaaagg 300 |||||||||| ||| ||||| || ||||||||||| || |||||||| ||||| || || Sbjct: 614 ctgatcttcaccagtgcacgggcgacgccgaggcaaatggcctgggcttggcccgagaga 555 Query: 301 ccgcctccctgaactttcacgaagacgtcgtagttgttctcaaaccctagagtcgccagg 360 || || || |||||||| ||||||||||||||| ||||||| |||||||| ||| ||||| Sbjct: 554 ccacccccgtgaactttgacgaagacgtcgtagctgttctcgaaccctagggtcaccagg 495 Query: 361 gggatcttgcaatactccacccacattggattcccttgcagatactcct 409 || | |||||| ||||||| |||||||||||| ||||||| |||||||| Sbjct: 494 ggtaccttgcagtactccatccacattggatttccttgcaaatactcct 446
>dbj|AB022675.1| Oryza sativa (japonica cultivar-group) rps9 mRNA for ribosomal protein S9, complete cds Length = 860 Score = 232 bits (117), Expect = 1e-57 Identities = 246/289 (85%) Strand = Plus / Minus Query: 121 taacgcttggagaactgggggcgcttgcgcgccttcttgagacccgccttcttcctctcg 180 |||||||| |||||||| ||||||||||| |||||||| ||||| ||||||||||| || Sbjct: 678 taacgctttgagaactgcgggcgcttgcgtgccttcttaagaccagccttcttcctttca 619 Query: 181 acgacacgagtgtctcttgtcagcaagccttctgacctcagggggactctgttggcgggg 240 || | ||| ||||||||||||||||| |||||| |||||| | ||| |||| |||| | Sbjct: 618 actatacgggtgtctcttgtcagcaaaccttctcccctcagagtaactttgtttgcggtg 559 Query: 241 ctgatcttcagcagcgcacgcgccacgccgaggcagatcgcctgggcctggcctgaaagg 300 |||||||||| ||| ||||| || ||||||||||| || |||||||| ||||| || || Sbjct: 558 ctgatcttcaccagtgcacgggcgacgccgaggcaaatggcctgggcttggcccgagaga 499 Query: 301 ccgcctccctgaactttcacgaagacgtcgtagttgttctcaaaccctagagtcgccagg 360 || || || |||||||| ||||||||||||||| ||||||| |||||||| ||| ||||| Sbjct: 498 ccacccccgtgaactttgacgaagacgtcgtagctgttctcgaaccctagggtcaccagg 439 Query: 361 gggatcttgcaatactccacccacattggattcccttgcagatactcct 409 || | |||||| ||||||| |||||||||||| ||||||| |||||||| Sbjct: 438 ggtaccttgcagtactccatccacattggatttccttgcaaatactcct 390
>gb|AF332374.1| Zea mays 9S ribosomal protein (lem1) gene, complete cds; nuclear gene for chloroplast product Length = 2870 Score = 224 bits (113), Expect = 3e-55 Identities = 245/289 (84%) Strand = Plus / Minus Query: 122 aacgcttggagaactgggggcgcttgcgcgccttcttgagacccgccttcttcctctcga 181 ||||||| ||||||||||| |||||||| |||||||||||||| ||||||||||| || | Sbjct: 2442 aacgctttgagaactggggccgcttgcgtgccttcttgagaccagccttcttcctttcaa 2383 Query: 182 cgacacgagtgtctcttgtcagcaagccttctgacctcagggggactctgttggcggggc 241 ||| ||| ||||| ||||||||||| ||||| ||| |||| || || |||||||| || Sbjct: 2382 cgatacgggtgtcccttgtcagcaaaccttccgacttcagaggaaccctgttggcattgc 2323 Query: 242 tgatcttcagcagcgcacgcgccacgccgaggcagatcgcctgggcctggcctgaaaggc 301 ||||||||| ||||||||| || || || ||||| || ||||||||||||||||| || | Sbjct: 2322 tgatcttcaccagcgcacgggcaacaccaaggcaaattgcctgggcctggcctgagagac 2263 Query: 302 cgcctccctgaactttcacgaagacgtcgtagttgttctcaaaccctagagtcgccaggg 361 | || || || |||||||| |||||||| ||||| |||||||||||||||||| || || Sbjct: 2262 cacccccgtgtactttcacaaagacgtcatagttcttctcaaaccctagagtcatcaagg 2203 Query: 362 ggatcttgcaatactccacccacattggattcccttgcagatactcctg 410 | | |||||| ||||||| |||||||||||| || |||| ||||||||| Sbjct: 2202 gtaccttgcagtactccatccacattggatttccctgcaaatactcctg 2154
>gb|AF332375.1|AF332375 Zea mays 9S ribosomal protein (lem1) mRNA, complete cds; nuclear gene for chloroplast product Length = 945 Score = 222 bits (112), Expect = 1e-54 Identities = 244/288 (84%) Strand = Plus / Minus Query: 122 aacgcttggagaactgggggcgcttgcgcgccttcttgagacccgccttcttcctctcga 181 ||||||| ||||||||||| |||||||| |||||||||||||| ||||||||||| || | Sbjct: 707 aacgctttgagaactggggccgcttgcgtgccttcttgagaccagccttcttcctttcaa 648 Query: 182 cgacacgagtgtctcttgtcagcaagccttctgacctcagggggactctgttggcggggc 241 ||| ||| ||||| ||||||||||| ||||| ||| |||| || || |||||||| || Sbjct: 647 cgatacgggtgtcccttgtcagcaaaccttccgacttcagaggaaccctgttggcattgc 588 Query: 242 tgatcttcagcagcgcacgcgccacgccgaggcagatcgcctgggcctggcctgaaaggc 301 ||||||||| ||||||||| || || || ||||| || ||||||||||||||||| || | Sbjct: 587 tgatcttcaccagcgcacgggcaacaccaaggcaaattgcctgggcctggcctgagagac 528 Query: 302 cgcctccctgaactttcacgaagacgtcgtagttgttctcaaaccctagagtcgccaggg 361 | || || || |||||||| |||||||| ||||| |||||||||||||||||| || || Sbjct: 527 cacccccgtgtactttcacaaagacgtcatagttcttctcaaaccctagagtcatcaagg 468 Query: 362 ggatcttgcaatactccacccacattggattcccttgcagatactcct 409 | | |||||| ||||||| |||||||||||| || |||| |||||||| Sbjct: 467 gtaccttgcagtactccatccacattggatttccctgcaaatactcct 420
>gb|AY065572.1|AY065572S1 Zea mays clone tac 902.33b 5' Ac insertion site sequence Length = 2359 Score = 133 bits (67), Expect = 8e-28 Identities = 145/171 (84%) Strand = Plus / Minus Query: 240 gctgatcttcagcagcgcacgcgccacgccgaggcagatcgcctgggcctggcctgaaag 299 ||||||||||| ||||||||| || || || ||||| || ||||||||||||||||| || Sbjct: 2324 gctgatcttcaccagcgcacgggcaacaccaaggcaaattgcctgggcctggcctgagag 2265 Query: 300 gccgcctccctgaactttcacgaagacgtcgtagttgttctcaaaccctagagtcgccag 359 || || || || |||||||| |||||||| ||||| |||||||||||||||||| || Sbjct: 2264 accacccccgtgtactttcacaaagacgtcatagttcttctcaaaccctagagtcatcaa 2205 Query: 360 ggggatcttgcaatactccacccacattggattcccttgcagatactcctg 410 ||| | |||||| ||||||| |||||||||||| || |||| ||||||||| Sbjct: 2204 gggtaccttgcagtactccatccacattggatttccctgcaaatactcctg 2154
>gb|AY065573.1|AY065572S2 Zea mays clone tac 902.33b 3' Ac insertion site sequence Length = 567 Score = 109 bits (55), Expect = 1e-20 Identities = 100/115 (86%) Strand = Plus / Minus Query: 122 aacgcttggagaactgggggcgcttgcgcgccttcttgagacccgccttcttcctctcga 181 ||||||| ||||||||||| |||||||| |||||||||||||| ||||||||||| || | Sbjct: 139 aacgctttgagaactggggccgcttgcgtgccttcttgagaccagccttcttcctttcaa 80 Query: 182 cgacacgagtgtctcttgtcagcaagccttctgacctcagggggactctgttggc 236 ||| ||| ||||| ||||||||||| ||||| ||| |||| || || |||||||| Sbjct: 79 cgatacgggtgtcccttgtcagcaaaccttccgacttcagaggaaccctgttggc 25
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 60.0 bits (30), Expect = 1e-05 Identities = 36/38 (94%) Strand = Plus / Plus Query: 124 cgcttggagaactgggggcgcttgcgcgccttcttgag 161 |||||||||||||| ||||||||||| ||||||||||| Sbjct: 3255482 cgcttggagaactgcgggcgcttgcgggccttcttgag 3255519
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Plus Query: 116 ccgattaacgcttggagaactgg 138 ||||||||||||||||||||||| Sbjct: 3151588 ccgattaacgcttggagaactgg 3151610
>gb|AC167967.6| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940144D9, complete sequence Length = 114276 Score = 46.1 bits (23), Expect = 0.15 Identities = 41/47 (87%) Strand = Plus / Minus Query: 144 cttgcgcgccttcttgagacccgccttcttcctctcgacgacacgag 190 |||||| |||||||||||||| |||||||| | ||||| ||| |||| Sbjct: 96085 cttgcgggccttcttgagaccggccttcttgcgctcgatgacgcgag 96039
>ref|NM_106155.2| Arabidopsis thaliana RPS9 (RIBOSOMAL PROTEIN S9); structural constituent of ribosome AT1G74970 (RPS9) mRNA, complete cds Length = 925 Score = 44.1 bits (22), Expect = 0.60 Identities = 46/54 (85%) Strand = Plus / Minus Query: 120 ttaacgcttggagaactgggggcgcttgcgcgccttcttgagacccgccttctt 173 ||||||||||||||| || ||| || |||||||||||||| || |||||||| Sbjct: 694 ttaacgcttggagaattgtggggctttacgcgccttcttgagcccggccttctt 641
>gb|AE009087.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 113 of 256 of the complete sequence Length = 10029 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 117 cgattaacgcttggagaactgg 138 |||||||||||||||||||||| Sbjct: 94 cgattaacgcttggagaactgg 115
>gb|AC090046.10| Mus musculus chromosome 6, clone RP23-82P24, complete sequence Length = 179099 Score = 44.1 bits (22), Expect = 0.60 Identities = 25/26 (96%) Strand = Plus / Plus Query: 442 actaaatatttatcaaatgtttatga 467 |||||||||||||||||||| ||||| Sbjct: 48798 actaaatatttatcaaatgtctatga 48823
>gb|AC121977.3| Mus musculus BAC clone RP24-287A16 from chromosome 6, complete sequence Length = 186279 Score = 44.1 bits (22), Expect = 0.60 Identities = 25/26 (96%) Strand = Plus / Minus Query: 442 actaaatatttatcaaatgtttatga 467 |||||||||||||||||||| ||||| Sbjct: 47376 actaaatatttatcaaatgtctatga 47351
>gb|AF344318.1| Arabidopsis thaliana putative ribosomal protein S9 (At1g74970) mRNA, complete cds Length = 627 Score = 44.1 bits (22), Expect = 0.60 Identities = 46/54 (85%) Strand = Plus / Minus Query: 120 ttaacgcttggagaactgggggcgcttgcgcgccttcttgagacccgccttctt 173 ||||||||||||||| || ||| || |||||||||||||| || |||||||| Sbjct: 627 ttaacgcttggagaattgtggggctttacgcgccttcttgagcccggccttctt 574
>gb|AY091382.1| Arabidopsis thaliana putative ribosomal protein S9 (At1g74970) mRNA, complete cds Length = 658 Score = 44.1 bits (22), Expect = 0.60 Identities = 46/54 (85%) Strand = Plus / Minus Query: 120 ttaacgcttggagaactgggggcgcttgcgcgccttcttgagacccgccttctt 173 ||||||||||||||| || ||| || |||||||||||||| || |||||||| Sbjct: 627 ttaacgcttggagaattgtggggctttacgcgccttcttgagcccggccttctt 574
>gb|AY045856.1| Arabidopsis thaliana putative ribosomal protein S9 (At1g74970) mRNA, complete cds Length = 886 Score = 44.1 bits (22), Expect = 0.60 Identities = 46/54 (85%) Strand = Plus / Minus Query: 120 ttaacgcttggagaactgggggcgcttgcgcgccttcttgagacccgccttctt 173 ||||||||||||||| || ||| || |||||||||||||| || |||||||| Sbjct: 694 ttaacgcttggagaattgtggggctttacgcgccttcttgagcccggccttctt 641
>gb|DQ131543.1| Rhizobium leguminosarum bv. trifolii membrane transport protein gene, partial cds Length = 981 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 117 cgattaacgcttggagaactgg 138 |||||||||||||||||||||| Sbjct: 888 cgattaacgcttggagaactgg 909
>gb|AC164626.6| Mus musculus 6 BAC RP23-472D18 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 190308 Score = 44.1 bits (22), Expect = 0.60 Identities = 25/26 (96%) Strand = Plus / Plus Query: 442 actaaatatttatcaaatgtttatga 467 |||||||||||||||||||| ||||| Sbjct: 132039 actaaatatttatcaaatgtctatga 132064
>gb|AE011980.1| Xanthomonas axonopodis pv. citri str. 306, section 358 of 469 of the complete genome Length = 11507 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Minus Query: 249 cagcagcgcacgcgccacgccg 270 |||||||||||||||||||||| Sbjct: 9431 cagcagcgcacgcgccacgccg 9410
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome Length = 2841581 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 117 cgattaacgcttggagaactgg 138 |||||||||||||||||||||| Sbjct: 1235828 cgattaacgcttggagaactgg 1235849
>gb|AY045600.1| Arabidopsis thaliana ATg74970/F25A4.6 mRNA, complete cds Length = 875 Score = 44.1 bits (22), Expect = 0.60 Identities = 46/54 (85%) Strand = Plus / Minus Query: 120 ttaacgcttggagaactgggggcgcttgcgcgccttcttgagacccgccttctt 173 ||||||||||||||| || ||| || |||||||||||||| || |||||||| Sbjct: 676 ttaacgcttggagaattgtggggctttacgcgccttcttgagcccggccttctt 623
>emb|BX842519.1|CNS0ACRP Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS17ZG10 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 542 Score = 44.1 bits (22), Expect = 0.60 Identities = 46/54 (85%) Strand = Plus / Minus Query: 120 ttaacgcttggagaactgggggcgcttgcgcgccttcttgagacccgccttctt 173 ||||||||||||||| || ||| || |||||||||||||| || |||||||| Sbjct: 336 ttaacgcttggagaattgtggggctttacgcgccttcttgagcccggccttctt 283
>gb|AC013258.5|AC013258 Arabidopsis thaliana chromosome 1 BAC F9E10 genomic sequence, complete sequence Length = 97263 Score = 44.1 bits (22), Expect = 0.60 Identities = 46/54 (85%) Strand = Plus / Minus Query: 120 ttaacgcttggagaactgggggcgcttgcgcgccttcttgagacccgccttctt 173 ||||||||||||||| || ||| || |||||||||||||| || |||||||| Sbjct: 45606 ttaacgcttggagaattgtggggctttacgcgccttcttgagcccggccttctt 45553
>gb|AY086419.1| Arabidopsis thaliana clone 250383 mRNA, complete sequence Length = 849 Score = 44.1 bits (22), Expect = 0.60 Identities = 46/54 (85%) Strand = Plus / Minus Query: 120 ttaacgcttggagaactgggggcgcttgcgcgccttcttgagacccgccttctt 173 ||||||||||||||| || ||| || |||||||||||||| || |||||||| Sbjct: 676 ttaacgcttggagaattgtggggctttacgcgccttcttgagcccggccttctt 623
>dbj|AK176797.1| Arabidopsis thaliana mRNA for putative ribosomal protein S9, complete cds, clone: RAFL25-34-H17 Length = 936 Score = 44.1 bits (22), Expect = 0.60 Identities = 46/54 (85%) Strand = Plus / Minus Query: 120 ttaacgcttggagaactgggggcgcttgcgcgccttcttgagacccgccttctt 173 ||||||||||||||| || ||| || |||||||||||||| || |||||||| Sbjct: 727 ttaacgcttggagaattgtggggctttacgcgccttcttgagcccggccttctt 674
>dbj|AK176790.1| Arabidopsis thaliana mRNA for putative ribosomal protein S9, complete cds, clone: RAFL25-33-J23 Length = 865 Score = 44.1 bits (22), Expect = 0.60 Identities = 46/54 (85%) Strand = Plus / Minus Query: 120 ttaacgcttggagaactgggggcgcttgcgcgccttcttgagacccgccttctt 173 ||||||||||||||| || ||| || |||||||||||||| || |||||||| Sbjct: 679 ttaacgcttggagaattgtggggctttacgcgccttcttgagcccggccttctt 626
>dbj|AK176773.1| Arabidopsis thaliana mRNA for putative ribosomal protein S9, complete cds, clone: RAFL25-32-E13 Length = 920 Score = 44.1 bits (22), Expect = 0.60 Identities = 46/54 (85%) Strand = Plus / Minus Query: 120 ttaacgcttggagaactgggggcgcttgcgcgccttcttgagacccgccttctt 173 ||||||||||||||| || ||| || |||||||||||||| || |||||||| Sbjct: 690 ttaacgcttggagaattgtggggctttacgcgccttcttgagcccggccttctt 637
>dbj|AK176758.1| Arabidopsis thaliana mRNA for putative ribosomal protein S9, complete cds, clone: RAFL25-29-N18 Length = 855 Score = 44.1 bits (22), Expect = 0.60 Identities = 46/54 (85%) Strand = Plus / Minus Query: 120 ttaacgcttggagaactgggggcgcttgcgcgccttcttgagacccgccttctt 173 ||||||||||||||| || ||| || |||||||||||||| || |||||||| Sbjct: 677 ttaacgcttggagaattgtggggctttacgcgccttcttgagcccggccttctt 624
>dbj|AK176754.1| Arabidopsis thaliana mRNA for putative ribosomal protein S9, complete cds, clone: RAFL25-29-E19 Length = 880 Score = 44.1 bits (22), Expect = 0.60 Identities = 46/54 (85%) Strand = Plus / Minus Query: 120 ttaacgcttggagaactgggggcgcttgcgcgccttcttgagacccgccttctt 173 ||||||||||||||| || ||| || |||||||||||||| || |||||||| Sbjct: 694 ttaacgcttggagaattgtggggctttacgcgccttcttgagcccggccttctt 641
>dbj|AK176696.1| Arabidopsis thaliana mRNA for putative ribosomal protein S9, complete cds, clone: RAFL25-24-A06 Length = 863 Score = 44.1 bits (22), Expect = 0.60 Identities = 46/54 (85%) Strand = Plus / Minus Query: 120 ttaacgcttggagaactgggggcgcttgcgcgccttcttgagacccgccttctt 173 ||||||||||||||| || ||| || |||||||||||||| || |||||||| Sbjct: 677 ttaacgcttggagaattgtggggctttacgcgccttcttgagcccggccttctt 624
>dbj|AK176639.1| Arabidopsis thaliana mRNA for putative ribosomal protein S9, complete cds, clone: RAFL25-17-I22 Length = 853 Score = 44.1 bits (22), Expect = 0.60 Identities = 46/54 (85%) Strand = Plus / Minus Query: 120 ttaacgcttggagaactgggggcgcttgcgcgccttcttgagacccgccttctt 173 ||||||||||||||| || ||| || |||||||||||||| || |||||||| Sbjct: 677 ttaacgcttggagaattgtggggctttacgcgccttcttgagcccggccttctt 624
>dbj|AK176858.1| Arabidopsis thaliana mRNA for putative ribosomal protein S9, complete cds, clone: RAFL25-41-G12 Length = 855 Score = 44.1 bits (22), Expect = 0.60 Identities = 46/54 (85%) Strand = Plus / Minus Query: 120 ttaacgcttggagaactgggggcgcttgcgcgccttcttgagacccgccttctt 173 ||||||||||||||| || ||| || |||||||||||||| || |||||||| Sbjct: 677 ttaacgcttggagaattgtggggctttacgcgccttcttgagcccggccttctt 624
>dbj|AK176368.1| Arabidopsis thaliana mRNA for putative ribosomal protein S9, complete cds, clone: RAFL24-07-J01 Length = 881 Score = 44.1 bits (22), Expect = 0.60 Identities = 46/54 (85%) Strand = Plus / Minus Query: 120 ttaacgcttggagaactgggggcgcttgcgcgccttcttgagacccgccttctt 173 ||||||||||||||| || ||| || |||||||||||||| || |||||||| Sbjct: 694 ttaacgcttggagaattgtggggctttacgcgccttcttgagcccggccttctt 641
>dbj|AK175968.1| Arabidopsis thaliana mRNA for putative ribosomal protein S9, complete cds, clone: RAFL22-66-A04 Length = 889 Score = 44.1 bits (22), Expect = 0.60 Identities = 46/54 (85%) Strand = Plus / Minus Query: 120 ttaacgcttggagaactgggggcgcttgcgcgccttcttgagacccgccttctt 173 ||||||||||||||| || ||| || |||||||||||||| || |||||||| Sbjct: 676 ttaacgcttggagaattgtggggctttacgcgccttcttgagcccggccttctt 623
>dbj|AK175895.1| Arabidopsis thaliana mRNA for putative ribosomal protein S9, complete cds, clone: RAFL22-53-M20 Length = 889 Score = 44.1 bits (22), Expect = 0.60 Identities = 46/54 (85%) Strand = Plus / Minus Query: 120 ttaacgcttggagaactgggggcgcttgcgcgccttcttgagacccgccttctt 173 ||||||||||||||| || ||| || |||||||||||||| || |||||||| Sbjct: 676 ttaacgcttggagaattgtggggctttacgcgccttcttgagcccggccttctt 623
>dbj|AK175827.1| Arabidopsis thaliana mRNA for putative ribosomal protein S9, complete cds, clone: RAFL22-43-F21 Length = 889 Score = 44.1 bits (22), Expect = 0.60 Identities = 46/54 (85%) Strand = Plus / Minus Query: 120 ttaacgcttggagaactgggggcgcttgcgcgccttcttgagacccgccttctt 173 ||||||||||||||| || ||| || |||||||||||||| || |||||||| Sbjct: 676 ttaacgcttggagaattgtggggctttacgcgccttcttgagcccggccttctt 623
>dbj|AK175742.1| Arabidopsis thaliana mRNA for putative ribosomal protein S9, complete cds, clone: RAFL22-29-C18 Length = 894 Score = 44.1 bits (22), Expect = 0.60 Identities = 46/54 (85%) Strand = Plus / Minus Query: 120 ttaacgcttggagaactgggggcgcttgcgcgccttcttgagacccgccttctt 173 ||||||||||||||| || ||| || |||||||||||||| || |||||||| Sbjct: 716 ttaacgcttggagaattgtggggctttacgcgccttcttgagcccggccttctt 663
>dbj|AK175562.1| Arabidopsis thaliana mRNA for putative ribosomal protein S9, complete cds, clone: RAFL21-98-I05 Length = 855 Score = 44.1 bits (22), Expect = 0.60 Identities = 46/54 (85%) Strand = Plus / Minus Query: 120 ttaacgcttggagaactgggggcgcttgcgcgccttcttgagacccgccttctt 173 ||||||||||||||| || ||| || |||||||||||||| || |||||||| Sbjct: 677 ttaacgcttggagaattgtggggctttacgcgccttcttgagcccggccttctt 624
>dbj|AK175516.1| Arabidopsis thaliana mRNA for putative ribosomal protein S9, complete cds, clone: RAFL21-93-N13 Length = 864 Score = 44.1 bits (22), Expect = 0.60 Identities = 46/54 (85%) Strand = Plus / Minus Query: 120 ttaacgcttggagaactgggggcgcttgcgcgccttcttgagacccgccttctt 173 ||||||||||||||| || ||| || |||||||||||||| || |||||||| Sbjct: 686 ttaacgcttggagaattgtggggctttacgcgccttcttgagcccggccttctt 633
>dbj|AK175501.1| Arabidopsis thaliana mRNA for putative ribosomal protein S9, complete cds, clone: RAFL21-93-C02 Length = 860 Score = 44.1 bits (22), Expect = 0.60 Identities = 46/54 (85%) Strand = Plus / Minus Query: 120 ttaacgcttggagaactgggggcgcttgcgcgccttcttgagacccgccttctt 173 ||||||||||||||| || ||| || |||||||||||||| || |||||||| Sbjct: 677 ttaacgcttggagaattgtggggctttacgcgccttcttgagcccggccttctt 624
>dbj|AK175127.1| Arabidopsis thaliana mRNA for putative ribosomal protein S9, complete cds, clone: RAFL21-54-G12 Length = 880 Score = 44.1 bits (22), Expect = 0.60 Identities = 46/54 (85%) Strand = Plus / Minus Query: 120 ttaacgcttggagaactgggggcgcttgcgcgccttcttgagacccgccttctt 173 ||||||||||||||| || ||| || |||||||||||||| || |||||||| Sbjct: 694 ttaacgcttggagaattgtggggctttacgcgccttcttgagcccggccttctt 641
>dbj|AB022676.1| Arabidopsis thaliana rps9 mRNA for ribosomal protein S9, complete cds Length = 879 Score = 44.1 bits (22), Expect = 0.60 Identities = 46/54 (85%) Strand = Plus / Minus Query: 120 ttaacgcttggagaactgggggcgcttgcgcgccttcttgagacccgccttctt 173 ||||||||||||||| || ||| || |||||||||||||| || |||||||| Sbjct: 703 ttaacgcttggagaattgtggggctttacgcgccttcttgagcccggccttctt 650
>gb|AC008263.2|F25A4 Arabidopsis thaliana chromosome 1 BAC F25A4 sequence, complete sequence Length = 115721 Score = 44.1 bits (22), Expect = 0.60 Identities = 46/54 (85%) Strand = Plus / Minus Query: 120 ttaacgcttggagaactgggggcgcttgcgcgccttcttgagacccgccttctt 173 ||||||||||||||| || ||| || |||||||||||||| || |||||||| Sbjct: 17269 ttaacgcttggagaattgtggggctttacgcgccttcttgagcccggccttctt 17216
>emb|AL954669.8| Zebrafish DNA sequence from clone DKEY-81J5, complete sequence Length = 133954 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Minus Query: 527 agtgtatatacagctgaaacca 548 |||||||||||||||||||||| Sbjct: 5277 agtgtatatacagctgaaacca 5256
>gb|AC158619.12| Mus musculus 10 BAC RP23-291O3 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 250421 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 447 atatttatcaaatgtttatgatttg 471 ||||||||||||||||||| ||||| Sbjct: 47521 atatttatcaaatgtttattatttg 47545
>gb|AC147369.3| Mus musculus BAC clone RP24-392B5 from chromosome 19, complete sequence Length = 184037 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 50 aggagatggccttttttcaag 70 ||||||||||||||||||||| Sbjct: 118731 aggagatggccttttttcaag 118711
>gb|AC153510.10| Mus musculus 10 BAC RP23-151C4 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 197889 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 447 atatttatcaaatgtttatgatttg 471 ||||||||||||||||||| ||||| Sbjct: 112645 atatttatcaaatgtttattatttg 112669
>gb|AC126940.4| Mus musculus BAC clone RP23-77E4 from chromosome 19, complete sequence Length = 256476 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 50 aggagatggccttttttcaag 70 ||||||||||||||||||||| Sbjct: 217652 aggagatggccttttttcaag 217672
>emb|AL449103.15| Human DNA sequence from clone RP11-478B20 on chromosome 13, complete sequence Length = 58473 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 588 aatttggatcattcttccaaa 608 ||||||||||||||||||||| Sbjct: 10977 aatttggatcattcttccaaa 10957
>gb|AF306443.5| Homo sapiens chromosome 8 clone RP11-79H13 map 8p21-p11, complete sequence Length = 161850 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 633 agagaaaaatattttttccct 653 ||||||||||||||||||||| Sbjct: 46029 agagaaaaatattttttccct 46049
>gb|AC098612.3| Homo sapiens chromosome 8 clone RP11-409I21 map 8p21-p11, complete sequence Length = 147588 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 633 agagaaaaatattttttccct 653 ||||||||||||||||||||| Sbjct: 102313 agagaaaaatattttttccct 102333
>gb|AC102942.2| Homo sapiens chromosome 8, clone RP11-237O13, complete sequence Length = 101620 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 633 agagaaaaatattttttccct 653 ||||||||||||||||||||| Sbjct: 56659 agagaaaaatattttttccct 56639
>gb|AC105148.5| Homo sapiens BAC clone RP11-521F1 from 4, complete sequence Length = 87731 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 628 gccaaagagaaaaatattttt 648 ||||||||||||||||||||| Sbjct: 43299 gccaaagagaaaaatattttt 43279
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 489 acagaagaagaaaagctgcac 509 ||||||||||||||||||||| Sbjct: 520689 acagaagaagaaaagctgcac 520709
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 642 tattttttccctgtgaaattt 662 ||||||||||||||||||||| Sbjct: 29902377 tattttttccctgtgaaattt 29902397
>dbj|AP005052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0654B04 Length = 156907 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 642 tattttttccctgtgaaattt 662 ||||||||||||||||||||| Sbjct: 2653 tattttttccctgtgaaattt 2673
>dbj|AP004040.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1008_D06 Length = 112768 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 642 tattttttccctgtgaaattt 662 ||||||||||||||||||||| Sbjct: 59342 tattttttccctgtgaaattt 59362
>emb|BX537305.32| Zebrafish DNA sequence from clone DKEY-45L12, complete sequence Length = 186856 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 441 gactaaatatttatcaaatgtttat 465 ||||||||||||||||||| ||||| Sbjct: 137670 gactaaatatttatcaaatatttat 137694
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 117 cgattaacgcttggagaactg 137 ||||||||||||||||||||| Sbjct: 3995516 cgattaacgcttggagaactg 3995536
>emb|AL844145.9| Mouse DNA sequence from clone RP23-403F4 on chromosome 2, complete sequence Length = 173053 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 494 agaagaaaagctgcaccaaaattta 518 |||| |||||||||||||||||||| Sbjct: 145796 agaataaaagctgcaccaaaattta 145820
>gb|AC149084.5| Mus musculus BAC clone RP23-173A12 from chromosome 19, complete sequence Length = 188848 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 gtagttgttctcaaacccta 349 |||||||||||||||||||| Sbjct: 137073 gtagttgttctcaaacccta 137054
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 9.4 Identities = 44/52 (84%) Strand = Plus / Plus Query: 122 aacgcttggagaactgggggcgcttgcgcgccttcttgagacccgccttctt 173 |||||||||||||||| | |||||| |||||||||||||| || ||||| Sbjct: 2063411 aacgcttggagaactgcgatgccttgcgggccttcttgagaccggctttctt 2063462
>ref|XM_322738.1| Neurospora crassa OR74A hypothetical protein (NCU03481.1) partial mRNA Length = 4035 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 492 gaagaagaaaagctgcacca 511 |||||||||||||||||||| Sbjct: 1174 gaagaagaaaagctgcacca 1193
>ref|XM_951277.1| Neurospora crassa OR74A hypothetical protein (NCU03481.1) partial mRNA Length = 4035 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 492 gaagaagaaaagctgcacca 511 |||||||||||||||||||| Sbjct: 1174 gaagaagaaaagctgcacca 1193
>gb|AC102497.7| Mus musculus chromosome 18, clone RP24-570C15, complete sequence Length = 165977 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 631 aaagagaaaaatattttttc 650 |||||||||||||||||||| Sbjct: 59178 aaagagaaaaatattttttc 59197
>ref|XM_880930.1| PREDICTED: Bos taurus similar to proteasome 26S non-ATPase subunit 1, transcript variant 5 (LOC511803), mRNA Length = 1183 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 630 caaagagaaaaatatttttt 649 |||||||||||||||||||| Sbjct: 756 caaagagaaaaatatttttt 737
>ref|XM_709213.1| Candida albicans SC5314 arginine/lysine/histidine permease Can1p (CaO19.97), mRNA Length = 1716 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 643 attttttccctgtgaaattt 662 |||||||||||||||||||| Sbjct: 575 attttttccctgtgaaattt 594
>gb|CP000114.1| Streptococcus agalactiae A909, complete genome Length = 2127839 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 631 aaagagaaaaatattttttc 650 |||||||||||||||||||| Sbjct: 357304 aaagagaaaaatattttttc 357285
>gb|AF235103.5| Homo sapiens chromosome 8 multiple clones map q24.3, complete sequence Length = 345524 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 511 aaaatttactcattttagtgtata 534 ||||||||||| |||||||||||| Sbjct: 23894 aaaatttactctttttagtgtata 23871
>gb|AC145549.3| Mus musculus BAC clone RP23-21M23 from chromosome 19, complete sequence Length = 247655 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 gtagttgttctcaaacccta 349 |||||||||||||||||||| Sbjct: 195832 gtagttgttctcaaacccta 195813
>gb|AC125049.3| Mus musculus BAC clone RP23-367C15 from chromosome 9, complete sequence Length = 211511 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 gtccagcacagaacaaagac 49 |||||||||||||||||||| Sbjct: 126609 gtccagcacagaacaaagac 126628
>gb|AC117810.8| Mus musculus chromosome 18, clone RP24-571D2, complete sequence Length = 207527 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 cagatactcctgcacatttc 418 |||||||||||||||||||| Sbjct: 67229 cagatactcctgcacatttc 67248
>emb|AL450312.10| Human DNA sequence from clone RP11-138L24 on chromosome 9, complete sequence Length = 164559 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 638 aaaatattttttccctgtgaaatt 661 |||||||||||||| ||||||||| Sbjct: 1162 aaaatattttttccttgtgaaatt 1139
>emb|AL391839.9| Human DNA sequence from clone RP11-135A24 on chromosome 10 Contains the 5' end of the EPC1 gene for enhancer of polycomb homolog 1, (Drosophila), the 5' end of the gene for a novel protein (FLJ32762) (FLJ25419), two novel genes and a CpG island, complete sequence Length = 162591 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 445 aaatatttatcaaatgttta 464 |||||||||||||||||||| Sbjct: 59787 aaatatttatcaaatgttta 59806
>emb|AL354701.7| Human DNA sequence from clone RP11-785H23 on chromosome 9 Contains the 3' end of a novel gene, and a novel pseudogene, complete sequence Length = 131366 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 638 aaaatattttttccctgtgaaatt 661 |||||||||||||| ||||||||| Sbjct: 130528 aaaatattttttccttgtgaaatt 130505
>gb|AF186192.5| Homo sapiens chromosome 8 clone XX-P7B3, RP4-698E23 map qtel, complete sequence Length = 145247 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 511 aaaatttactcattttagtgtata 534 ||||||||||| |||||||||||| Sbjct: 108416 aaaatttactctttttagtgtata 108393
>ref|XM_969685.1| PREDICTED: Tribolium castaneum similar to CG12050-PA (LOC663649), mRNA Length = 1602 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 631 aaagagaaaaatattttttc 650 |||||||||||||||||||| Sbjct: 358 aaagagaaaaatattttttc 377
>emb|BX030138.1|CNS08VF2 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA45AA11 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 721 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 487 gtacagaagaagaaaagctgcacc 510 ||||||||||||||||| |||||| Sbjct: 140 gtacagaagaagaaaagatgcacc 163
>emb|BX016587.1|CNS08KYN Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA24DH03 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 294 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 487 gtacagaagaagaaaagctgcacc 510 ||||||||||||||||| |||||| Sbjct: 150 gtacagaagaagaaaagatgcacc 173
>emb|BX572607.1| Rhodopseudomonas palustris CGA009 complete genome; segment 15/16 Length = 345012 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 264 cacgccgaggcagatcgcctgggc 287 ||||||||||| |||||||||||| Sbjct: 271964 cacgccgaggccgatcgcctgggc 271941
>emb|BX572597.1| Rhodopseudomonas palustris CGA009 complete genome; segment 5/16 Length = 349737 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 cagcgcacgcgccacgccga 271 |||||||||||||||||||| Sbjct: 135611 cagcgcacgcgccacgccga 135630
>emb|AL669988.1|NCB23H20 Neurospora crassa DNA linkage group II BAC contig B23H20 Length = 122151 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 492 gaagaagaaaagctgcacca 511 |||||||||||||||||||| Sbjct: 96875 gaagaagaaaagctgcacca 96894
>emb|AL766844.1|SAG766844 Streptococcus agalactiae NEM316 complete genome, segment 2 Length = 240050 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 631 aaagagaaaaatattttttc 650 |||||||||||||||||||| Sbjct: 206161 aaagagaaaaatattttttc 206142
>emb|AL669989.1|NCB8L21 Neurospora crassa DNA linkage group II BAC clone B8L21 Length = 70704 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 492 gaagaagaaaagctgcacca 511 |||||||||||||||||||| Sbjct: 46909 gaagaagaaaagctgcacca 46890
>emb|AL591982.1| Listeria monocytogenes strain EGD, complete genome, segment 10/12 Length = 295050 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 445 aaatatttatcaaatgtttatgat 468 |||||| ||||||||||||||||| Sbjct: 139834 aaatatgtatcaaatgtttatgat 139857
>emb|AJ251787.1|MMU251787 Mus musculus Hox11 gene for transcription factor, exons 1-3 Length = 10246 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 gtagttgttctcaaacccta 349 |||||||||||||||||||| Sbjct: 2225 gtagttgttctcaaacccta 2206
>emb|CR848813.6| Zebrafish DNA sequence from clone DKEY-260J20 in linkage group 5, complete sequence Length = 206722 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 489 acagaagaagaaaagctgca 508 |||||||||||||||||||| Sbjct: 28846 acagaagaagaaaagctgca 28827 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 489 acagaagaagaaaagctgca 508 |||||||||||||||||||| Sbjct: 22755 acagaagaagaaaagctgca 22736
>gb|AE012087.1| Xanthomonas axonopodis pv. citri str. 306, section 465 of 469 of the complete genome Length = 9362 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 250 agcagcgcacgcgccacgccgagg 273 |||||||||||||||| ||||||| Sbjct: 6899 agcagcgcacgcgccatgccgagg 6922
>gb|CP000282.1| Saccharophagus degradans 2-40, complete genome Length = 5057531 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 gattaacgcttggagaactg 137 |||||||||||||||||||| Sbjct: 4040520 gattaacgcttggagaactg 4040539
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 ttaacgcttggagaactggg 139 |||||||||||||||||||| Sbjct: 3909768 ttaacgcttggagaactggg 3909787
>gb|AC009643.8| Homo sapiens chromosome 11, clone RP11-111A24, complete sequence Length = 183169 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 445 aaatatttatcaaatgttta 464 |||||||||||||||||||| Sbjct: 93654 aaatatttatcaaatgttta 93673
>gb|AC159378.8| Mus musculus 10 BAC RP23-199N18 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 202745 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 cagcacagaacaaagacagg 52 |||||||||||||||||||| Sbjct: 160587 cagcacagaacaaagacagg 160568
>gb|AC008876.6| Homo sapiens chromosome 5 clone CTD-2201P10, complete sequence Length = 152707 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 508 accaaaatttactcatttta 527 |||||||||||||||||||| Sbjct: 44924 accaaaatttactcatttta 44943
>gb|AC008568.7| Homo sapiens chromosome 5 clone CTC-546K23, complete sequence Length = 152706 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 508 accaaaatttactcatttta 527 |||||||||||||||||||| Sbjct: 107784 accaaaatttactcatttta 107765
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 634 gagaaaaatattttttccct 653 |||||||||||||||||||| Sbjct: 23585359 gagaaaaatattttttccct 23585378
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 507 caccaaaatttactcatttt 526 |||||||||||||||||||| Sbjct: 20643927 caccaaaatttactcatttt 20643908
>gb|AC008323.3|AC008323 Drosophila melanogaster, chromosome 2L, region 24D-24D, BAC clone BACR03G07, complete sequence Length = 170064 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 488 tacagaagaagaaaagctgc 507 |||||||||||||||||||| Sbjct: 119779 tacagaagaagaaaagctgc 119760
>dbj|AB022053.2| Mus musculus gene for prolyl oligopeptidase, complete cds Length = 42600 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 cagcacagaacaaagacagg 52 |||||||||||||||||||| Sbjct: 5377 cagcacagaacaaagacagg 5358
>gb|AC012071.9| Homo sapiens BAC clone RP11-328L5 from 2, complete sequence Length = 195265 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 445 aaatatttatcaaatgtttatgat 468 |||||||||||||||| ||||||| Sbjct: 117013 aaatatttatcaaatggttatgat 117036
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 9.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 151 gccttcttgagacccgccttcttcctctcgac 182 |||||||||||||| |||||||| | |||||| Sbjct: 6006805 gccttcttgagaccggccttcttgcgctcgac 6006774
>gb|AC010967.3| Homo sapiens BAC clone RP11-7H13 from 2, complete sequence Length = 197328 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 519 ctcattttagtgtatatacagctg 542 ||||||||||| |||||||||||| Sbjct: 40835 ctcattttagtttatatacagctg 40858
>gb|AC009299.5| Homo sapiens BAC clone RP11-26B22 from 2, complete sequence Length = 169697 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 508 accaaaatttactcatttta 527 |||||||||||||||||||| Sbjct: 36880 accaaaatttactcatttta 36861
>dbj|AP005092.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1112_E07 Length = 132055 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 507 caccaaaatttactcatttt 526 |||||||||||||||||||| Sbjct: 37538 caccaaaatttactcatttt 37519
>dbj|AP005314.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0515E01 Length = 140063 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 507 caccaaaatttactcatttt 526 |||||||||||||||||||| Sbjct: 109585 caccaaaatttactcatttt 109566
>emb|AL953908.7| Zebrafish DNA sequence from clone CH211-202A12, complete sequence Length = 193129 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 489 acagaagaagaaaagctgca 508 |||||||||||||||||||| Sbjct: 140537 acagaagaagaaaagctgca 140556 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 489 acagaagaagaaaagctgca 508 |||||||||||||||||||| Sbjct: 134446 acagaagaagaaaagctgca 134465
>emb|AL671536.8| Mouse DNA sequence from clone RP23-291O10 on chromosome X, complete sequence Length = 221255 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 636 gaaaaatattttttccctgt 655 |||||||||||||||||||| Sbjct: 47005 gaaaaatattttttccctgt 46986
>emb|BX005220.7| Zebrafish DNA sequence from clone DKEY-82D4 in linkage group 1, complete sequence Length = 170985 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 444 taaatatttatcaaatgttt 463 |||||||||||||||||||| Sbjct: 47142 taaatatttatcaaatgttt 47123
>emb|X76689.1|CACAN1 C.albicans (WO1) can1 gene Length = 3385 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 643 attttttccctgtgaaattt 662 |||||||||||||||||||| Sbjct: 1798 attttttccctgtgaaattt 1817
>emb|CR762268.2| Xenopus tropicalis finished cDNA, clone TGas123h09 Length = 1415 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 653 tgtgaaatttggtgactgaa 672 |||||||||||||||||||| Sbjct: 375 tgtgaaatttggtgactgaa 356
>gb|AE003579.3| Drosophila melanogaster chromosome 2L, section 12 of 83 of the complete sequence Length = 304674 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 488 tacagaagaagaaaagctgc 507 |||||||||||||||||||| Sbjct: 142996 tacagaagaagaaaagctgc 142977
>dbj|AP001002.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-678K21, complete sequences Length = 164380 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 446 aatatttatcaaatgtttat 465 |||||||||||||||||||| Sbjct: 154840 aatatttatcaaatgtttat 154859
>dbj|AB083344.2| Agrobacterium tumefaciens ferric iron uptake system gene cluster (agbF, agbC, agbE, agbB, agbA, agbD), complete cds Length = 7390 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 140 ggcgcttgcgcgccttcttgagac 163 |||||||||||||| ||||||||| Sbjct: 1595 ggcgcttgcgcgccgtcttgagac 1572
>dbj|AK114870.1| Ciona intestinalis cDNA, clone:cieg020l16, full insert sequence Length = 1331 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 93 gactctaacaacaaagaagcatcc 116 ||||||||||||||| |||||||| Sbjct: 1016 gactctaacaacaaacaagcatcc 993
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 634 gagaaaaatattttttccct 653 |||||||||||||||||||| Sbjct: 23513550 gagaaaaatattttttccct 23513569
>emb|AL935126.18| Zebrafish DNA sequence from clone CH211-186J3, complete sequence Length = 174986 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 457 aatgtttatgatttgcatgt 476 |||||||||||||||||||| Sbjct: 14704 aatgtttatgatttgcatgt 14685
>emb|AL772425.7|CNS08CA3 Oryza sativa chromosome 12, . BAC OJ1396_C02 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 157690 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 634 gagaaaaatattttttccct 653 |||||||||||||||||||| Sbjct: 121051 gagaaaaatattttttccct 121032
>gb|AC170878.4| Mus musculus BAC clone RP24-226F17 from chromosome 19, complete sequence Length = 148454 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 gtagttgttctcaaacccta 349 |||||||||||||||||||| Sbjct: 74833 gtagttgttctcaaacccta 74814 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,853,202 Number of Sequences: 3902068 Number of extensions: 7853202 Number of successful extensions: 209748 Number of sequences better than 10.0: 122 Number of HSP's better than 10.0 without gapping: 121 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 208933 Number of HSP's gapped (non-prelim): 815 length of query: 689 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 666 effective length of database: 17,143,297,704 effective search space: 11417436270864 effective search space used: 11417436270864 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
