Clone Information

BLAST Search Result

Clone Name	rbags22p18
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|NM_192058.1\| Oryza sativa (japonica cultivar-group), predic...	214	2e-52
2	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	214	2e-52
3	dbj\|AP004363.3\| Oryza sativa (japonica cultivar-group) genomic D...	214	2e-52
4	dbj\|AB008845.1\| Oryza sativa mRNA for NADH dependent Glutamate S...	214	2e-52
5	dbj\|AB001916.1\| Oryza sativa gene for NADH-dependent glutamate s...	214	2e-52
6	gb\|DQ093360.1\| Puccinellia tenuiflora NADH-dependent glutamate s...	172	6e-40
7	gb\|BT024053.1\| Zea mays clone EL01N0438E02 mRNA sequence	131	2e-27
8	gb\|AY105675.1\| Zea mays PCO100130 mRNA sequence	131	2e-27
9	ref\|XM_475886.1\| Oryza sativa (japonica cultivar-group), predic...	115	1e-22
10	gb\|AC104709.2\| Oryza sativa (japonica cultivar-group) chromosome...	115	1e-22
11	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	115	1e-22
12	dbj\|AK071893.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	115	1e-22
13	dbj\|AK070485.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	115	1e-22
14	gb\|AF051210.1\|AF051210 Picea mariana probable NADH-glutamate syn...	48	0.023
15	gb\|AC104453.2\| Homo sapiens chromosome 1 clone RP4-672J20, compl...	44	0.35
16	gb\|AC027691.13\|AC027691 Homo sapiens chromosome 1 clone RP11-287...	44	0.35
17	ref\|XM_322370.1\| Neurospora crassa OR74A predicted protein (NCU0...	42	1.4
18	ref\|XM_952663.1\| Neurospora crassa OR74A hypothetical protein (N...	42	1.4
19	emb\|AL356419.10\| Human DNA sequence from clone RP11-99L6 on chro...	42	1.4
20	gb\|AC005658.3\|AC005658 citb_11_o_6, complete sequence	42	1.4
21	gb\|AC005659.3\|AC005659 citb_161_g_12, complete sequence	42	1.4
22	gb\|L01660.1\|ALFNADHSYN Medicago sativa NADH-glutamate synthase m...	42	1.4
23	gb\|L37606.1\|ALFNDGS Medicago sativa (clone GG16-1) NADH-dependen...	42	1.4
24	gb\|AC091396.4\| Mus musculus strain C57BL6/J chromosome 6 clone R...	40	5.5
25	emb\|AL357510.17\| Human DNA sequence from clone RP11-195F21 on ch...	40	5.5
26	emb\|AL355492.9\| Human DNA sequence from clone RP3-322A24 on chro...	40	5.5
27	emb\|AL139425.8\| Human DNA sequence from clone RP4-788L13 on chro...	40	5.5
28	emb\|AL021327.1\|HS124O9 Human DNA sequence from clone RP1-124O9 o...	40	5.5
29	gb\|AC112491.4\| Homo sapiens 3 BAC RP11-3P17 (Roswell Park Cancer...	40	5.5
30	gb\|AC103716.2\| Homo sapiens chromosome 8, clone RP11-344I13, com...	40	5.5
31	gb\|AC104471.6\| Homo sapiens 3 BAC RP11-80B17 (Roswell Park Cance...	40	5.5
32	gb\|AC103953.8\| Homo sapiens chromosome 8, clone CTD-2571K21, com...	40	5.5
33	gb\|AF003529.2\| Homo sapiens glypican 3 (GPC3) gene, partial cds ...	40	5.5

>ref|NM_192058.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 6474

 Score =  214 bits (108), Expect = 2e-52
 Identities = 189/216 (87%)
 Strand = Plus / Minus

                                                                        
Query: 171  acctgcacccaaggcagtgatgccttctgcggcattttgttcatcccttgacaagtactt 230
            |||||||||| |||  || ||| | |||||||||| |||||||| |||||||||||||||
Sbjct: 6450 acctgcacccgagggggttatgtcctctgcggcatcttgttcattccttgacaagtactt 6391

                                                                        
Query: 231  gtcaaccgcggcagcagcttcacgtccttcagtgatggcccaaacaaccagtgattgccc 290
            ||| || || ||||||||||  || || || ||||||||||||||||| |||||||| ||
Sbjct: 6390 gtcgacagctgcagcagcttgccgcccctcggtgatggcccaaacaacaagtgattgtcc 6331

                                                                        
Query: 291  acgcctgcaatccccagcagcgaaaatgccatccacactggtcgcgaagtgtccaaattg 350
            ||| ||||| ||||| ||||| |||||||||||||||||||| || |||| |||||||||
Sbjct: 6330 acgtctgcagtccccggcagcaaaaatgccatccacactggttgcaaagtttccaaattg 6271

                                                
Query: 351  agctttgaagttggaccggttgtctttctctaaacc 386
            |||||||||||| ||||||||||||||||| |||||
Sbjct: 6270 agctttgaagttagaccggttgtctttctccaaacc 6235

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  214 bits (108), Expect = 2e-52
 Identities = 189/216 (87%)
 Strand = Plus / Plus

                                                                            
Query: 171      acctgcacccaaggcagtgatgccttctgcggcattttgttcatcccttgacaagtactt 230
                |||||||||| |||  || ||| | |||||||||| |||||||| |||||||||||||||
Sbjct: 28084770 acctgcacccgagggggttatgtcctctgcggcatcttgttcattccttgacaagtactt 28084829

                                                                            
Query: 231      gtcaaccgcggcagcagcttcacgtccttcagtgatggcccaaacaaccagtgattgccc 290
                ||| || || ||||||||||  || || || ||||||||||||||||| |||||||| ||
Sbjct: 28084830 gtcgacagctgcagcagcttgccgcccctcggtgatggcccaaacaacaagtgattgtcc 28084889

                                                                            
Query: 291      acgcctgcaatccccagcagcgaaaatgccatccacactggtcgcgaagtgtccaaattg 350
                ||| ||||| ||||| ||||| |||||||||||||||||||| || |||| |||||||||
Sbjct: 28084890 acgtctgcagtccccggcagcaaaaatgccatccacactggttgcaaagtttccaaattg 28084949

                                                    
Query: 351      agctttgaagttggaccggttgtctttctctaaacc 386
                |||||||||||| ||||||||||||||||| |||||
Sbjct: 28084950 agctttgaagttagaccggttgtctttctccaaacc 28084985

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>dbj|AP004363.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0019E03
          Length = 152092

 Score =  214 bits (108), Expect = 2e-52
 Identities = 189/216 (87%)
 Strand = Plus / Plus

                                                                          
Query: 171    acctgcacccaaggcagtgatgccttctgcggcattttgttcatcccttgacaagtactt 230
              |||||||||| |||  || ||| | |||||||||| |||||||| |||||||||||||||
Sbjct: 99969  acctgcacccgagggggttatgtcctctgcggcatcttgttcattccttgacaagtactt 100028

                                                                          
Query: 231    gtcaaccgcggcagcagcttcacgtccttcagtgatggcccaaacaaccagtgattgccc 290
              ||| || || ||||||||||  || || || ||||||||||||||||| |||||||| ||
Sbjct: 100029 gtcgacagctgcagcagcttgccgcccctcggtgatggcccaaacaacaagtgattgtcc 100088

                                                                          
Query: 291    acgcctgcaatccccagcagcgaaaatgccatccacactggtcgcgaagtgtccaaattg 350
              ||| ||||| ||||| ||||| |||||||||||||||||||| || |||| |||||||||
Sbjct: 100089 acgtctgcagtccccggcagcaaaaatgccatccacactggttgcaaagtttccaaattg 100148

                                                  
Query: 351    agctttgaagttggaccggttgtctttctctaaacc 386
              |||||||||||| ||||||||||||||||| |||||
Sbjct: 100149 agctttgaagttagaccggttgtctttctccaaacc 100184

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>dbj|AB008845.1| Oryza sativa mRNA for NADH dependent Glutamate Synthase, complete cds
          Length = 7037

 Score =  214 bits (108), Expect = 2e-52
 Identities = 189/216 (87%)
 Strand = Plus / Minus

                                                                        
Query: 171  acctgcacccaaggcagtgatgccttctgcggcattttgttcatcccttgacaagtactt 230
            |||||||||| |||  || ||| | |||||||||| |||||||| |||||||||||||||
Sbjct: 6738 acctgcacccgagggggttatgtcctctgcggcatcttgttcattccttgacaagtactt 6679

                                                                        
Query: 231  gtcaaccgcggcagcagcttcacgtccttcagtgatggcccaaacaaccagtgattgccc 290
            ||| || || ||||||||||  || || || ||||||||||||||||| |||||||| ||
Sbjct: 6678 gtcgacagctgcagcagcttgccgcccctcggtgatggcccaaacaacaagtgattgtcc 6619

                                                                        
Query: 291  acgcctgcaatccccagcagcgaaaatgccatccacactggtcgcgaagtgtccaaattg 350
            ||| ||||| ||||| ||||| |||||||||||||||||||| || |||| |||||||||
Sbjct: 6618 acgtctgcagtccccggcagcaaaaatgccatccacactggttgcaaagtttccaaattg 6559

                                                
Query: 351  agctttgaagttggaccggttgtctttctctaaacc 386
            |||||||||||| ||||||||||||||||| |||||
Sbjct: 6558 agctttgaagttagaccggttgtctttctccaaacc 6523

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>dbj|AB001916.1| Oryza sativa gene for NADH-dependent glutamate synthase
          Length = 17070

 Score =  214 bits (108), Expect = 2e-52
 Identities = 189/216 (87%)
 Strand = Plus / Minus

                                                                         
Query: 171   acctgcacccaaggcagtgatgccttctgcggcattttgttcatcccttgacaagtactt 230
             |||||||||| |||  || ||| | |||||||||| |||||||| |||||||||||||||
Sbjct: 14265 acctgcacccgagggggttatgtcctctgcggcatcttgttcattccttgacaagtactt 14206

                                                                         
Query: 231   gtcaaccgcggcagcagcttcacgtccttcagtgatggcccaaacaaccagtgattgccc 290
             ||| || || ||||||||||  || || || ||||||||||||||||| |||||||| ||
Sbjct: 14205 gtcgacagctgcagcagcttgccgcccctcggtgatggcccaaacaacaagtgattgtcc 14146

                                                                         
Query: 291   acgcctgcaatccccagcagcgaaaatgccatccacactggtcgcgaagtgtccaaattg 350
             ||| ||||| ||||| ||||| |||||||||||||||||||| || |||| |||||||||
Sbjct: 14145 acgtctgcagtccccggcagcaaaaatgccatccacactggttgcaaagtttccaaattg 14086

                                                 
Query: 351   agctttgaagttggaccggttgtctttctctaaacc 386
             |||||||||||| ||||||||||||||||| |||||
Sbjct: 14085 agctttgaagttagaccggttgtctttctccaaacc 14050

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>gb|DQ093360.1| Puccinellia tenuiflora NADH-dependent glutamate synthase protein
           mRNA, partial cds
          Length = 495

 Score =  172 bits (87), Expect = 6e-40
 Identities = 117/127 (92%)
 Strand = Plus / Minus

                                                                       
Query: 262 gtgatggcccaaacaaccagtgattgcccacgcctgcaatccccagcagcgaaaatgcca 321
           |||||||||||||||||||||||||||||||| ||||| ||||| || || || | ||||
Sbjct: 491 gtgatggcccaaacaaccagtgattgcccacgtctgcagtccccggcggcaaagacgcca 432

                                                                       
Query: 322 tccacactggtcgcgaagtgtccaaattgagctttgaagttggaccggttgtctttctct 381
           |||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 431 tccacactggtcgcaaagtgtccaaattgggctttgaagttggaccggttgtccttctct 372

                  
Query: 382 aaaccca 388
           |||||||
Sbjct: 371 aaaccca 365

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>gb|BT024053.1| Zea mays clone EL01N0438E02 mRNA sequence
          Length = 2225

 Score =  131 bits (66), Expect = 2e-27
 Identities = 159/190 (83%)
 Strand = Plus / Minus

                                                                        
Query: 202  gcattttgttcatcccttgacaagtacttgtcaaccgcggcagcagcttcacgtccttca 261
            ||||| || |||| |||||||||||||||||| ||||| |||||||| |  || || || 
Sbjct: 1884 gcattctgatcataccttgacaagtacttgtctaccgctgcagcagcctgccgcccctcc 1825

                                                                        
Query: 262  gtgatggcccaaacaaccagtgattgcccacgcctgcaatccccagcagcgaaaatgcca 321
            |||||||||||||| ||||||||||| ||||| ||||| ||||| || || || |  |||
Sbjct: 1824 gtgatggcccaaaccaccagtgattgtccacgtctgcagtccccggcggcaaacacacca 1765

                                                                        
Query: 322  tccacactggtcgcgaagtgtccaaattgagctttgaagttggaccggttgtctttctct 381
            || |||||||| ||||||| |||||| || ||||||||||| || | |||||| ||||| 
Sbjct: 1764 tcgacactggtagcgaagtctccaaactgcgctttgaagtttgatctgttgtccttctcc 1705

                      
Query: 382  aaacccaatt 391
            ||||||||||
Sbjct: 1704 aaacccaatt 1695

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>gb|AY105675.1| Zea mays PCO100130 mRNA sequence
          Length = 1107

 Score =  131 bits (66), Expect = 2e-27
 Identities = 159/190 (83%)
 Strand = Plus / Minus

                                                                       
Query: 202 gcattttgttcatcccttgacaagtacttgtcaaccgcggcagcagcttcacgtccttca 261
           ||||| || |||| |||||||||||||||||| ||||| |||||||| |  || || || 
Sbjct: 752 gcattctgatcataccttgacaagtacttgtctaccgctgcagcagcctgccgcccctcc 693

                                                                       
Query: 262 gtgatggcccaaacaaccagtgattgcccacgcctgcaatccccagcagcgaaaatgcca 321
           |||||||||||||| ||||||||||| ||||| ||||| ||||| || || || |  |||
Sbjct: 692 gtgatggcccaaaccaccagtgattgtccacgtctgcagtccccggcggcaaacacacca 633

                                                                       
Query: 322 tccacactggtcgcgaagtgtccaaattgagctttgaagttggaccggttgtctttctct 381
           || |||||||| ||||||| |||||| || ||||||||||| || | |||||| ||||| 
Sbjct: 632 tcgacactggtagcgaagtctccaaactgcgctttgaagtttgatctgttgtccttctcc 573

                     
Query: 382 aaacccaatt 391
           ||||||||||
Sbjct: 572 aaacccaatt 563

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>ref|XM_475886.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1830

 Score =  115 bits (58), Expect = 1e-22
 Identities = 94/106 (88%)
 Strand = Plus / Minus

                                                                        
Query: 262  gtgatggcccaaacaaccagtgattgcccacgcctgcaatccccagcagcgaaaatgcca 321
            |||||||||||||||||||||||||||||||| ||||| || |||||||| || |  || 
Sbjct: 1706 gtgatggcccaaacaaccagtgattgcccacgtctgcagtctccagcagcaaatacacct 1647

                                                          
Query: 322  tccacactggtcgcgaagtgtccaaattgagctttgaagttggacc 367
            |||||| ||||||| |||| ||||||||||||||||||||| ||||
Sbjct: 1646 tccacattggtcgcaaagtttccaaattgagctttgaagtttgacc 1601

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>gb|AC104709.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1214_E03,
             complete sequence
          Length = 144601

 Score =  115 bits (58), Expect = 1e-22
 Identities = 94/106 (88%)
 Strand = Plus / Minus

                                                                         
Query: 262   gtgatggcccaaacaaccagtgattgcccacgcctgcaatccccagcagcgaaaatgcca 321
             |||||||||||||||||||||||||||||||| ||||| || |||||||| || |  || 
Sbjct: 11809 gtgatggcccaaacaaccagtgattgcccacgtctgcagtctccagcagcaaatacacct 11750

                                                           
Query: 322   tccacactggtcgcgaagtgtccaaattgagctttgaagttggacc 367
             |||||| ||||||| |||| ||||||||||||||||||||| ||||
Sbjct: 11749 tccacattggtcgcaaagtttccaaattgagctttgaagtttgacc 11704

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  115 bits (58), Expect = 1e-22
 Identities = 94/106 (88%)
 Strand = Plus / Minus

                                                                            
Query: 262      gtgatggcccaaacaaccagtgattgcccacgcctgcaatccccagcagcgaaaatgcca 321
                |||||||||||||||||||||||||||||||| ||||| || |||||||| || |  || 
Sbjct: 27415679 gtgatggcccaaacaaccagtgattgcccacgtctgcagtctccagcagcaaatacacct 27415620

                                                              
Query: 322      tccacactggtcgcgaagtgtccaaattgagctttgaagttggacc 367
                |||||| ||||||| |||| ||||||||||||||||||||| ||||
Sbjct: 27415619 tccacattggtcgcaaagtttccaaattgagctttgaagtttgacc 27415574

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>dbj|AK071893.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013053K07, full
            insert sequence
          Length = 1792

 Score =  115 bits (58), Expect = 1e-22
 Identities = 94/106 (88%)
 Strand = Plus / Minus

                                                                        
Query: 262  gtgatggcccaaacaaccagtgattgcccacgcctgcaatccccagcagcgaaaatgcca 321
            |||||||||||||||||||||||||||||||| ||||| || |||||||| || |  || 
Sbjct: 1401 gtgatggcccaaacaaccagtgattgcccacgtctgcagtctccagcagcaaatacacct 1342

                                                          
Query: 322  tccacactggtcgcgaagtgtccaaattgagctttgaagttggacc 367
            |||||| ||||||| |||| ||||||||||||||||||||| ||||
Sbjct: 1341 tccacattggtcgcaaagtttccaaattgagctttgaagtttgacc 1296

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>dbj|AK070485.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049P18, full
            insert sequence
          Length = 2257

 Score =  115 bits (58), Expect = 1e-22
 Identities = 94/106 (88%)
 Strand = Plus / Minus

                                                                        
Query: 262  gtgatggcccaaacaaccagtgattgcccacgcctgcaatccccagcagcgaaaatgcca 321
            |||||||||||||||||||||||||||||||| ||||| || |||||||| || |  || 
Sbjct: 1810 gtgatggcccaaacaaccagtgattgcccacgtctgcagtctccagcagcaaatacacct 1751

                                                          
Query: 322  tccacactggtcgcgaagtgtccaaattgagctttgaagttggacc 367
            |||||| ||||||| |||| ||||||||||||||||||||| ||||
Sbjct: 1750 tccacattggtcgcaaagtttccaaattgagctttgaagtttgacc 1705

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>gb|AF051210.1|AF051210 Picea mariana probable NADH-glutamate synthase (Sb14) mRNA, partial
           cds
          Length = 1247

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 96/120 (80%)
 Strand = Plus / Minus

                                                                       
Query: 255 tccttcagtgatggcccaaacaaccagtgattgcccacgcctgcaatccccagcagcgaa 314
           ||||||||  |||||||||||||| ||||| || ||||| || || || |||||||| ||
Sbjct: 374 tccttcagcaatggcccaaacaacaagtgactgaccacgtctacagtcgccagcagcaaa 315

                                                                       
Query: 315 aatgccatccacactggtcgcgaagtgtccaaattgagctttgaagttggaccggttgtc 374
            |  ||||| |||||||| || || |  ||||| |  ||||||||||| || ||||||||
Sbjct: 314 tacaccatcaacactggtagcaaaatcaccaaagttggctttgaagtttgaacggttgtc 255

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>gb|AC104453.2| Homo sapiens chromosome 1 clone RP4-672J20, complete sequence
          Length = 112662

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 32   tttctttccctattgagcccagcctt 57
            ||||||||||||||| ||||||||||
Sbjct: 5867 tttctttccctattgggcccagcctt 5892

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>gb|AC027691.13|AC027691 Homo sapiens chromosome 1 clone RP11-287O16, complete sequence
          Length = 175977

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 32     tttctttccctattgagcccagcctt 57
              ||||||||||||||| ||||||||||
Sbjct: 106982 tttctttccctattgggcccagcctt 107007

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>ref|XM_322370.1| Neurospora crassa OR74A predicted protein (NCU00285.1) partial mRNA
          Length = 1635

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 228 cttgtcaaccgcggcagcagc 248
           |||||||||||||||||||||
Sbjct: 255 cttgtcaaccgcggcagcagc 235

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>ref|XM_952663.1| Neurospora crassa OR74A hypothetical protein (NCU00285.1) partial
           mRNA
          Length = 1635

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 228 cttgtcaaccgcggcagcagc 248
           |||||||||||||||||||||
Sbjct: 255 cttgtcaaccgcggcagcagc 235

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>emb|AL356419.10| Human DNA sequence from clone RP11-99L6 on chromosome 10, complete
             sequence
          Length = 126232

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 168   cagacctgcacccaaggcagtgatg 192
             ||||||||| |||||||||||||||
Sbjct: 40180 cagacctgctcccaaggcagtgatg 40204

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>gb|AC005658.3|AC005658 citb_11_o_6, complete sequence
          Length = 72449

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 168   cagacctgcacccaaggcagtgatg 192
             ||||||||| |||||||||||||||
Sbjct: 50883 cagacctgctcccaaggcagtgatg 50907

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>gb|AC005659.3|AC005659 citb_161_g_12, complete sequence
          Length = 116058

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 168   cagacctgcacccaaggcagtgatg 192
             ||||||||| |||||||||||||||
Sbjct: 72710 cagacctgctcccaaggcagtgatg 72686

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>gb|L01660.1|ALFNADHSYN Medicago sativa NADH-glutamate synthase mRNA, comlete cds
          Length = 7174

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 48/57 (84%)
 Strand = Plus / Minus

                                                                     
Query: 319  ccatccacactggtcgcgaagtgtccaaattgagctttgaagttggaccggttgtct 375
            ||||| |||||||||| |||| | ||| | | |||||||||||| |||| |||||||
Sbjct: 6616 ccatcaacactggtcgagaagcggccataatcagctttgaagtttgacctgttgtct 6560

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>gb|L37606.1|ALFNDGS Medicago sativa (clone GG16-1) NADH-dependent glutamate synthase gene,
             complete cds
          Length = 14306

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 48/57 (84%)
 Strand = Plus / Minus

                                                                      
Query: 319   ccatccacactggtcgcgaagtgtccaaattgagctttgaagttggaccggttgtct 375
             ||||| |||||||||| |||| | ||| | | |||||||||||| |||| |||||||
Sbjct: 13696 ccatcaacactggtcgagaagcggccataatcagctttgaagtttgacctgttgtct 13640

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>gb|AC091396.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-298M8, complete
             sequence
          Length = 237142

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    cctctctttctttccctatt 45
             ||||||||||||||||||||
Sbjct: 70192 cctctctttctttccctatt 70211

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>emb|AL357510.17| Human DNA sequence from clone RP11-195F21 on chromosome 10 Contains the
             5' end of a novel gene, complete sequence
          Length = 121493

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    tctctttctttccctattga 47
             ||||||||||||||||||||
Sbjct: 38286 tctctttctttccctattga 38305

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>emb|AL355492.9| Human DNA sequence from clone RP3-322A24 on chromosome 6 Contains part
             of a novel gene (FNDC2) and part of the FNDC1 gene for
             fibronectin type III domain containing 1, complete
             sequence
          Length = 51962

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 290   cacgcctgcaatccccagca 309
             ||||||||||||||||||||
Sbjct: 40309 cacgcctgcaatccccagca 40290

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>emb|AL139425.8| Human DNA sequence from clone RP4-788L13 on chromosome 1p21.1-21.3
             Contains the 3' end of gene for plasticity related gene 1
             (PRG), complete sequence
          Length = 68858

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 290   cacgcctgcaatccccagca 309
             ||||||||||||||||||||
Sbjct: 37937 cacgcctgcaatccccagca 37918

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>emb|AL021327.1|HS124O9 Human DNA sequence from clone RP1-124O9 on chromosome 6q21 Contains an
             HSJ2 (heat shock protein, DNAJ-like 2 (HDJ2)) pseudogene,
             complete sequence
          Length = 108534

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 175   gcacccaaggcagtgatgcc 194
             ||||||||||||||||||||
Sbjct: 72396 gcacccaaggcagtgatgcc 72377

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>gb|AC112491.4| Homo sapiens 3 BAC RP11-3P17 (Roswell Park Cancer Institute Human BAC
            Library) complete sequence
          Length = 154758

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 290  cacgcctgcaatccccagca 309
            ||||||||||||||||||||
Sbjct: 7253 cacgcctgcaatccccagca 7272

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>gb|AC103716.2| Homo sapiens chromosome 8, clone RP11-344I13, complete sequence
          Length = 180624

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 290    cacgcctgcaatccccagca 309
              ||||||||||||||||||||
Sbjct: 170145 cacgcctgcaatccccagca 170164

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>gb|AC104471.6| Homo sapiens 3 BAC RP11-80B17 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 160698

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 290    cacgcctgcaatccccagca 309
              ||||||||||||||||||||
Sbjct: 138999 cacgcctgcaatccccagca 139018

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>gb|AC103953.8| Homo sapiens chromosome 8, clone CTD-2571K21, complete sequence
          Length = 216373

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 290   cacgcctgcaatccccagca 309
             ||||||||||||||||||||
Sbjct: 90007 cacgcctgcaatccccagca 90026

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>gb|AF003529.2| Homo sapiens glypican 3 (GPC3) gene, partial cds and flanking repeat
             regions
          Length = 165658

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 290   cacgcctgcaatccccagca 309
             ||||||||||||||||||||
Sbjct: 54364 cacgcctgcaatccccagca 54383


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,900,649
Number of Sequences: 3902068
Number of extensions: 3900649
Number of successful extensions: 80228
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80119
Number of HSP's gapped (non-prelim): 108
length of query: 410
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 388
effective length of database: 17,147,199,772
effective search space: 6653113511536
effective search space used: 6653113511536
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result