ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags22p12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ADA10_XENLA (Q8JIY1) ADAM 10 precursor (EC 3.4.24.81) (A disinte... 32 0.48
2XYNA_STRLI (P26514) Endo-1,4-beta-xylanase A precursor (EC 3.2.1... 30 1.1
3HA33_CLOBO (P46084) Main hemagglutinin component (HA 33 kDa subu... 30 1.8
4LSD1_CAEEL (Q9XWP6) Probable lysine-specific histone demethylase... 28 4.1
5IRS1_CERAE (Q28224) Insulin receptor substrate 1 (IRS-1) 28 5.3
6DMD_PIG (Q5GN48) Dystrophin 28 6.9
7ENVE_SALTY (Q56030) Probable lipoprotein envE precursor 28 6.9
8SYH_PASMU (P57988) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histi... 27 9.0
9MASY_STRAE (P77947) Malate synthase (EC 2.3.3.9) 27 9.0
10Y045_RICCN (Q92JM2) Hypothetical protein RC0045 27 9.0

>ADA10_XENLA (Q8JIY1) ADAM 10 precursor (EC 3.4.24.81) (A disintegrin and|
           metalloproteinase domain 10) (Kuzbanian protein homolog)
           (xKuz)
          Length = 749

 Score = 31.6 bits (70), Expect = 0.48
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = +3

Query: 33  YKHNGSVILRRRE--RLARDACMLFIRDSPHRFFSRYVRTHERGYADACPRVRA 188
           ++ +G VILR++   +  ++ C LFI+ + H F+ RY  T E   A     V+A
Sbjct: 201 HEDSGPVILRKKRAAQAEKNTCQLFIQ-TDHLFYKRYGETREAVIAQISSHVKA 253



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>XYNA_STRLI (P26514) Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) (Xylanase|
           A) (1,4-beta-D-xylan xylanohydrolase A)
          Length = 477

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
 Frame = -2

Query: 308 DGTEVVLWKWCEGDNQRWKIQPYY*AGQRAPCMDRCM------HGSRTYAWTCIG 162
           DGT++ LW    G NQ+W       AG+     D+C+      +GS+   ++C G
Sbjct: 374 DGTQLQLWDCHSGTNQQWAATD---AGELRVYGDKCLDAAGTSNGSKVQIYSCWG 425



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>HA33_CLOBO (P46084) Main hemagglutinin component (HA 33 kDa subunit) (HA1)|
          Length = 285

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = -2

Query: 341 LNGDKYHGGVRDGTEVVLWKWCEGDNQRWKIQPYY*AGQRAPCMDRCMHGSRTYAW 174
           LN D++     +   +VLW+W +   Q+W I+  Y   + A  + +C   +R   W
Sbjct: 157 LNSDRFLSKNLNSQIIVLWQWFDSSRQKWIIE--YNETKSAYTL-KCQENNRYLTW 209



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>LSD1_CAEEL (Q9XWP6) Probable lysine-specific histone demethylase 1 (EC|
           1.-.-.-) (Suppressor of presenilin 5) (P110b homolog)
          Length = 770

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 176 WTCIGISTLMCTYVSTEETMWAVPDE 99
           W+ +  S ++CTY+  EE M  +PD+
Sbjct: 554 WSSVPGSKVLCTYIVGEEAMLELPDD 579



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>IRS1_CERAE (Q28224) Insulin receptor substrate 1 (IRS-1)|
          Length = 1251

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -3

Query: 277  ARATTSAGRSSPTTEQGSARRAWIDACMARARTRGHASAYPR 152
            A A++SA  +SPT  QG+A  A   + +  A+  G  SA+ R
Sbjct: 1042 AAASSSAASASPTGPQGAAELAAHSSLLGGAQGPGGMSAFTR 1083



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>DMD_PIG (Q5GN48) Dystrophin|
          Length = 3674

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
 Frame = +1

Query: 250  IFQRWLSPSHHFQSTTSVPSRTP----PWYLSPLR 342
            IF +WL+ + HF   T +P         WYL  L+
Sbjct: 2111 IFNQWLTEAEHFLKKTQIPENWEHAKYKWYLKELQ 2145



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>ENVE_SALTY (Q56030) Probable lipoprotein envE precursor|
          Length = 173

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 317 GVRDGTEVVLWKWCEGDNQRW 255
           G ++GT ++L+     DNQRW
Sbjct: 108 GTKEGTPIILYSCTGNDNQRW 128



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>SYH_PASMU (P57988) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA|
           ligase) (HisRS)
          Length = 423

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 20/73 (27%), Positives = 31/73 (42%)
 Frame = -2

Query: 302 TEVVLWKWCEGDNQRWKIQPYY*AGQRAPCMDRCMHGSRTYAWTCIGISTLMCTYVSTEE 123
           TE  LW+W EG   R  +Q Y  +  R P ++     +R        +S  M T+   +E
Sbjct: 17  TESPLWQWVEG-KVRSVLQNYGYSEVRMPIVESTPLFARAIGEVTDVVSKEMYTFWDNDE 75

Query: 122 TMWAVPDEQHACV 84
            +   P+    CV
Sbjct: 76  QLTLRPEGTAGCV 88



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>MASY_STRAE (P77947) Malate synthase (EC 2.3.3.9)|
          Length = 543

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 57  LRRRERLARDACMLFIRDSPHRFFSRYVRTHERGYADACPRV 182
           L R+E +  DA + F+ +  HR F+R V       ADA   +
Sbjct: 17  LPRQEEVLTDAALAFVAELLHRRFTRAVTNSSPRRADAAREI 58



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>Y045_RICCN (Q92JM2) Hypothetical protein RC0045|
          Length = 108

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +2

Query: 137 RTYT*AWICRCMSTRTCASHACIDP 211
           RTY   WI R  + R  ASHAC  P
Sbjct: 78  RTYIRRWISRRNNIRRKASHACKQP 102


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,145,301
Number of Sequences: 219361
Number of extensions: 1016837
Number of successful extensions: 2755
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2753
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 1375720320
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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