>YYAK_BACSU (P37513) Hypothetical protein yyaK|
          Length = 299

 Score = 46.2 bits (108), Expect = 1e-04
 Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
 Frame = -2

Query: 451 SEEFLFRGALMPIFGL----NWISALVTGAFFGALHLGNGRKYSFAIWATFVGLAYGLA- 287
           +EE  FRG L+  FG          L+ G  FG LH  N    + A+WA    L +G   
Sbjct: 159 AEELFFRGFLLQAFGRLTKNPLFLTLIVGGLFGVLHFANPEMNNGAVWAGIEYLTFGFVW 218

Query: 286 ---TIASSSIIVPMASHSINNI 230
              TI + SI + + +H+ NN+
Sbjct: 219 TYYTIKTGSIEISLGAHAANNM 240

>YPBD_BACSU (P50730) Hypothetical protein ypbD|
          Length = 189

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 37/138 (26%), Positives = 59/138 (42%)
 Frame = -2

Query: 619 WHLELVAGLVILISSTRYILLQTWPDFRDSSEAANTQILTSLESLDYIVVACLPGISEEF 440
           W+   +A +VIL       +++ +P         N +I +       I +  L   +EE 
Sbjct: 37  WYGVSIAVIVILADMA---VMKWFPSHLYDDGGINKKIFSKRSIPHIIFLTLLIAFAEEM 93

Query: 439 LFRGALMPIFGLNWISALVTGAFFGALHLGNGRKYSFAIWATFVGLAYGLATIASSSIIV 260
           LFRG L    GL W ++L+    F ALH     K+   I  T +    GL    + ++ V
Sbjct: 94  LFRGVLQTHIGL-WTASLI----FAALHFRYLSKWLLFIMVTAISFLLGLMYEWTGNLFV 148

Query: 259 PMASHSINNIIGGLLWRF 206
           PM +H I + +     RF
Sbjct: 149 PMTAHFIIDAVFACQIRF 166

>YPRA_ECOLI (P13974) Hypothetical 24.3 kDa protein (URF 1)|
          Length = 217

 Score = 37.7 bits (86), Expect = 0.036
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
 Frame = -2

Query: 487 LDYIVVACLPGISEEFLFRGALMPIFGLN-----WISALVTGAFFGALHLGNGRKYSFAI 323
           L  + +  L  ++EE LFRG ++ +F        W+ AL+T   F A H       + A 
Sbjct: 122 LTLLTIFILAPLNEETLFRGIMLNVFRSRYCWTMWLGALITSLLFVAAHSQYQNLLTLA- 180

Query: 322 WATFVGLAYGLATIASSSIIVPMASHSINNIIG 224
               VGL   +A I S  +++P+  H     +G
Sbjct: 181 ELFLVGLITSVARIRSGGLLLPVLLHMEATTLG 213

>YHB0_YEAST (P38748) Hypothetical 67.5 kDa protein in PRPS4-STE20 intergenic|
           region
          Length = 585

 Score = 34.3 bits (77), Expect = 0.40
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
 Frame = -1

Query: 479 HCSCLSPWDKRRVPVSRGTDANFWIE-LDKRPGNWCLFRCSSLGQRQEIFICNL-GNIRW 306
           HC CL+ W   R PV R +      E L K+ G+     C++ G    ++IC + GN+  
Sbjct: 264 HCQCLNKWKNSRCPVCRHSSLRLSRESLLKQAGDSA--HCATCGSTDNLWICLICGNV-- 319

Query: 305 PCLWFSNHSFLKHH 264
            C  +++   +KH+
Sbjct: 320 GCGRYNSKHAIKHY 333

>Y715_MYCCT (P45613) Hypothetical protein MCAP_0715 (ORF1)|
          Length = 336

 Score = 34.3 bits (77), Expect = 0.40
 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
 Frame = -2

Query: 478 IVVACLPGISEEFLFRGALMPIFGLNWISALVTGAFFGALHLGNGRKYS---FAIWATFV 308
           I+   +  + EE + R AL        +S +V+  +FG LH+ +G  Y+   + I   F 
Sbjct: 241 ILTVFIAPLCEEIVARQALFTGVSNKVLSIIVSSLYFGILHISSGDVYNIFPYVIGGFFF 300

Query: 307 GLAYGLATIASSSIIVPMASHSINNIIGGLL 215
            LA+   + +  ++     SHS  N+I  +L
Sbjct: 301 SLAF---SFSKGNLSYCWLSHSFYNLISVVL 328

>FACE2_DROME (Q9U1H8) CAAX prenyl protease 2 (EC 3.4.22.-) (Prenyl|
           protein-specific endoprotease 2) (Farnesylated
           proteins-converting enzyme 2) (FACE-2) (Protein severas)
          Length = 302

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 18/95 (18%)
 Frame = -2

Query: 454 ISEEFLFRGALMPIFGLNW---ISALVTGAFFGALHLGN-------GRKYSFA------- 326
           +SEEF+FR  +MP+   ++   ++  +T  FFG  HL +       G + S A       
Sbjct: 158 LSEEFVFRACMMPLILQSFSPLVAVFITPLFFGVAHLHHIAERLSLGVELSTALLIGLFQ 217

Query: 325 -IWATFVGLAYGLATIASSSIIVPMASHSINNIIG 224
            I+ T  G         +  ++ P+  H+  N +G
Sbjct: 218 FIYTTLFGFYSAFLFARTGHVMAPILVHAFCNHMG 252

>YBDJ_LACLA (Q9CJ66) Hypothetical UPF0177 protein ybdJ|
          Length = 226

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
 Frame = -2

Query: 490 SLDYIVVACLPGISEEFLFRGALMPIFGLNWISALVTGAFFGALHLGNGRKYSFAIW--- 320
           SLD  V+     ISEE ++R  L  +F    ++  V+   F  +H   G  YSF ++   
Sbjct: 132 SLDLFVIG---PISEELIYREYLYRLFDKKCLACFVSVTMFAWVH--TGFTYSFFLYLPI 186

Query: 319 ATFVGLAYGLATIASSSIIVPMASHSINNIIGGLL--WRF 206
           +  V LAY        SI +  + + IN  +  LL  W F
Sbjct: 187 SLVVTLAYHRRKAIGESIALHSSINLINTYLPNLLSFWVF 226

>PAFA_BOVIN (Q28017) Platelet-activating factor acetylhydrolase precursor (EC|
           3.1.1.47) (PAF acetylhydrolase) (PAF 2-acylhydrolase)
           (LDL-associated phospholipase A2) (LDL-PLA(2))
           (2-acetyl-1-alkylglycerophosphocholine esterase)
           (1-alkyl-2-acetylglyceropho
          Length = 444

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 14/103 (13%)
 Frame = -2

Query: 424 LMPIFGLNWISALVTGAFFGAL--------HLGNGRKYSFAIWATFVGL------AYGLA 287
           L    G +W+   + G FFG++        HL  G KY   I++  +G       A G+ 
Sbjct: 107 LSKFLGTHWLVGKIMGLFFGSMTTPAAWNAHLRTGEKYPLIIFSHGLGAFRTIYSAIGI- 165

Query: 286 TIASSSIIVPMASHSINNIIGGLLWRFRDNSEREM*NGQYFLL 158
            +AS   IV    H   +      + F+D S  E+ N  +  L
Sbjct: 166 DLASHGFIVAAVEHRDGS--ASSTYYFKDQSAVEIGNKSWLYL 206

>SELA_DESBA (P56372) L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1)|
           (Cysteinyl-tRNA(Sec) selenium transferase)
           (Selenocysteine synthase) (Selenocysteinyl-tRNA(Sec)
           synthase)
          Length = 465

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = +1

Query: 301 QGQRMLPRLQMNISCRCPSEEHRKRHQLPGRLSNSIQKLASVPLETGTLRLSQG 462
           Q +R +P L M  +   P E H +  +L  RLS  +  LASV ++ G  R+  G
Sbjct: 345 QARRTVPTLAMITAA--PKELHARAGRLRRRLSRDLAGLASVAVKPGFSRVGGG 396

>GATA_BORBU (O51317) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)|
           (Glu-ADT subunit A)
          Length = 496

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 18/94 (19%)
 Frame = -2

Query: 457 GISEEFLFRGALMPIFGLNWI-------SALVTGAFFGALHLGNGRKYSFAIWATFVGLA 299
           G + EF + GA +      ++       SA V  AF     LG+    S  + A+F G+ 
Sbjct: 144 GSTCEFSYYGATLNPLNREYVIGGSSGGSAAVVAAFQAPFSLGSDTGGSVRLPASFSGIL 203

Query: 298 -----------YGLATIASSSIIVPMASHSINNI 230
                      YGLA+ ASS   +   SHSI +I
Sbjct: 204 GFKPSYGGLSRYGLASYASSFDQIGFFSHSIEDI 237

>YXDF_LACLA (Q9CDG9) Hypothetical UPF0177 protein yxdF|
          Length = 177

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 36/145 (24%), Positives = 61/145 (42%), Gaps = 10/145 (6%)
 Frame = -2

Query: 625 ETWHLELV---AGLVILISSTRYIL----LQTWPDFRDSSEAANTQILTSLESL--DYIV 473
           + W L+ +    G+V    +T Y++    L+T      +S+   + IL  L  L   YI+
Sbjct: 23  KNWDLKRIFWLMGIVFFTLATNYLVTVLVLKTQIISSVTSDTGMSDILGQLPILCQKYIL 82

Query: 472 VACLPGISEEFLFRGALMPIFGLNWISALVTGAFFGALHLG-NGRKYSFAIWATFVGLAY 296
              +P +SEE LFR  +        ++ L++   F  +H G +     + I +  +   Y
Sbjct: 83  GIIVP-LSEELLFRSYIFGSITNKKVAFLISSVLFALVHTGFSWYLLPYLILSFIITWVY 141

Query: 295 GLATIASSSIIVPMASHSINNIIGG 221
                   S IV    HS  N+ GG
Sbjct: 142 SKRNNFIESAIV----HSSVNLFGG 162


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,273,323
Number of Sequences: 219361
Number of extensions: 2288139
Number of successful extensions: 5668
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5667
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7422931207
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)