ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags22p08 |
|---|---|
| Clone Library Name | barley_pub |
>PSD9_RAT (Q9WTV5) 26S proteasome non-ATPase regulatory subunit 9 (26S| proteasome regulatory subunit p27) (Transactivating protein Bridge-1) Length = 222 Score = 65.5 bits (158), Expect = 1e-10 Identities = 36/108 (33%), Positives = 62/108 (57%), Gaps = 6/108 (5%) Frame = -2 Query: 565 SRNDPMEEDLVTRLP-----FAMIDDIADGSPAALDGLLLGDEIVKFGSVEAGGRLQERL 401 +R + M L + P FA ++ I+ GSPA++ GL + DEIV+FGSV + Sbjct: 115 AREEAMNRRLASDSPALPKAFARVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSLQN 174 Query: 400 VSEALSNEDNQ-VSLLIIRQGSPMNLTITPRKWHGRGLMGCHFRIL*R 260 V + + + + +++++IR+G L +TP +W G+GL+GC+ L R Sbjct: 175 VGTVVQHSEGKPLNVMVIRRGEKHQLRLTPTRWAGKGLLGCNITPLQR 222
>PSD9_MOUSE (Q9CR00) 26S proteasome non-ATPase regulatory subunit 9 (26S| proteasome regulatory subunit p27) Length = 222 Score = 62.8 bits (151), Expect = 9e-10 Identities = 34/102 (33%), Positives = 57/102 (55%), Gaps = 6/102 (5%) Frame = -2 Query: 565 SRNDPMEEDLVTRLP-----FAMIDDIADGSPAALDGLLLGDEIVKFGSVEAGGRLQERL 401 +R + M L + P FA ++ I+ GSPA++ GL + DEIV+FGSV + Sbjct: 115 AREEAMNRRLASNSPVLPQAFARVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSVQN 174 Query: 400 VSEALS-NEDNQVSLLIIRQGSPMNLTITPRKWHGRGLMGCH 278 V + +E +++ +IR+G L + P +W G+GL+GC+ Sbjct: 175 VGTVVQHSEGKPLNVTVIRRGEKHQLRLIPTRWAGKGLLGCN 216
>PSD9_YEAST (P40555) Probable 26S proteasome regulatory subunit p27 (Proteasome| non-ATPase subunit 2) Length = 220 Score = 62.4 bits (150), Expect = 1e-09 Identities = 29/102 (28%), Positives = 59/102 (57%), Gaps = 2/102 (1%) Frame = -2 Query: 565 SRNDPMEEDLVTRLPFAMIDDIADGSPAALDGLLLGDEIVKFGSVEAGGRLQ-ERLVSEA 389 +R + ++ + +PFA I ++ GSP+ + + D+++ G+V A + + + Sbjct: 119 ARRNNDDQAIQYTIPFAFISEVVPGSPSDKADIKVDDKLISIGNVHAANHSKLQNIQMVV 178 Query: 388 LSNEDNQVSLLIIRQGSPMNLTITP-RKWHGRGLMGCHFRIL 266 + NED + +L++R+G + ++TP R W+GRGL+GC + L Sbjct: 179 MKNEDRPLPVLLLREGQILKTSLTPSRNWNGRGLLGCRIQEL 220
>PSD9_HUMAN (O00233) 26S proteasome non-ATPase regulatory subunit 9 (26S| proteasome regulatory subunit p27) Length = 223 Score = 61.6 bits (148), Expect = 2e-09 Identities = 30/82 (36%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Frame = -2 Query: 520 FAMIDDIADGSPAALDGLLLGDEIVKFGSVEAGG-RLQERLVSEALSNEDNQVSLLIIRQ 344 FA ++ I+ GSPA++ GL + DEIV+FGSV + + S +E +++ +IR+ Sbjct: 136 FAKVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSLHNIGSVVQHSEGKPLNVTVIRR 195 Query: 343 GSPMNLTITPRKWHGRGLMGCH 278 G L + P +W G+GL+GC+ Sbjct: 196 GEKHQLRLVPTRWAGKGLLGCN 217
>PSD9_CAEEL (Q10920) Probable 26S proteasome non-ATPase regulatory subunit 9| Length = 197 Score = 56.6 bits (135), Expect = 6e-08 Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 1/83 (1%) Frame = -2 Query: 523 PFAMIDDIADGSPAALDGLLLGDEIVKFGSVEAGGRLQERLVSEALS-NEDNQVSLLIIR 347 PF I + + SPA + G D I+++G++ G + V++ +ED + + +IR Sbjct: 106 PFVKISSVVELSPADIGGFRKDDLIIQYGNLHHGNFNDMQEVAQITKQSEDKIIRVTVIR 165 Query: 346 QGSPMNLTITPRKWHGRGLMGCH 278 + P+ L I P+KW G GL+GC+ Sbjct: 166 ENRPVRLEICPKKWSGPGLLGCN 188
>ECFE_ECOLI (P0AEH1) Protease ecfE (EC 3.4.24.-)| Length = 450 Score = 37.0 bits (84), Expect = 0.051 Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 22/125 (17%) Frame = -2 Query: 601 SSGISAPPHGGLSRND-----------PMEEDLVTRLPFA--------MIDDIADGSPAA 479 S+ I+ P G R D P +ED V+ L +++++ S A+ Sbjct: 177 STTITVAPFGSDQRRDVKLDLRHWAFEPDKEDPVSSLGIRPRGPQIEPVLENVQPNSAAS 236 Query: 478 LDGLLLGDEIVKFGSVEAGGRLQERLVSEALSNEDN---QVSLLIIRQGSPMNLTITPRK 308 GL GD IVK G+ + V+ + DN ++L I RQGSP++LT+ P Sbjct: 237 KAGLQAGDRIVK-----VDGQPLTQWVTFVMLVRDNPGKSLALEIERQGSPLSLTLIPES 291 Query: 307 WHGRG 293 G G Sbjct: 292 KPGNG 296
>ECFE_ECO57 (P0AEH2) Protease ecfE (EC 3.4.24.-)| Length = 450 Score = 37.0 bits (84), Expect = 0.051 Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 22/125 (17%) Frame = -2 Query: 601 SSGISAPPHGGLSRND-----------PMEEDLVTRLPFA--------MIDDIADGSPAA 479 S+ I+ P G R D P +ED V+ L +++++ S A+ Sbjct: 177 STTITVAPFGSDQRRDVKLDLRHWAFEPDKEDPVSSLGIRPRGPQIEPVLENVQPNSAAS 236 Query: 478 LDGLLLGDEIVKFGSVEAGGRLQERLVSEALSNEDN---QVSLLIIRQGSPMNLTITPRK 308 GL GD IVK G+ + V+ + DN ++L I RQGSP++LT+ P Sbjct: 237 KAGLQAGDRIVK-----VDGQPLTQWVTFVMLVRDNPGKSLALEIERQGSPLSLTLIPES 291 Query: 307 WHGRG 293 G G Sbjct: 292 KPGNG 296
>Y1281_STAAC (Q5HGG9) Hypothetical zinc metalloprotease SACOL1281 (EC 3.4.24.-)| Length = 428 Score = 35.4 bits (80), Expect = 0.15 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Frame = -2 Query: 523 PFAMIDDIADGSPAALDGLLLGDEIVKFGSVEAGGRLQERLVSEALSN-EDNQVSLLIIR 347 P + ++ +AD PA GL GD+IV+ G + + V +AL +DN+ ++ R Sbjct: 200 PTSTVEQVADKYPAQQAGLQKGDKIVQIGKYKIS---EFDDVDKALDKVKDNKTTVKFER 256 Query: 346 QGSPMNLTITPRK 308 G ++ +TP+K Sbjct: 257 DGKTKSVELTPKK 269
>Y1262_STAAM (P63332) Hypothetical zinc metalloprotease SAV1262 (EC 3.4.24.-)| Length = 428 Score = 35.4 bits (80), Expect = 0.15 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Frame = -2 Query: 523 PFAMIDDIADGSPAALDGLLLGDEIVKFGSVEAGGRLQERLVSEALSN-EDNQVSLLIIR 347 P + ++ +AD PA GL GD+IV+ G + + V +AL +DN+ ++ R Sbjct: 200 PTSTVEQVADKYPAQQAGLQKGDKIVQIGKYKIS---EFDDVDKALDKVKDNKTTVKFER 256 Query: 346 QGSPMNLTITPRK 308 G ++ +TP+K Sbjct: 257 DGKTKSVELTPKK 269
>Y1196_STAAS (Q6G9V1) Hypothetical zinc metalloprotease SAS1196 (EC 3.4.24.-)| Length = 428 Score = 35.4 bits (80), Expect = 0.15 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Frame = -2 Query: 523 PFAMIDDIADGSPAALDGLLLGDEIVKFGSVEAGGRLQERLVSEALSN-EDNQVSLLIIR 347 P + ++ +AD PA GL GD+IV+ G + + V +AL +DN+ ++ R Sbjct: 200 PTSTVEQVADKYPAQQAGLQKGDKIVQIGKYKIS---EFDDVDKALDKVKDNKTTVKFER 256 Query: 346 QGSPMNLTITPRK 308 G ++ +TP+K Sbjct: 257 DGKTKSVELTPKK 269
>Y1145_STAAW (Q8NWZ4) Hypothetical zinc metalloprotease MW1145 (EC 3.4.24.-)| Length = 428 Score = 35.4 bits (80), Expect = 0.15 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Frame = -2 Query: 523 PFAMIDDIADGSPAALDGLLLGDEIVKFGSVEAGGRLQERLVSEALSN-EDNQVSLLIIR 347 P + ++ +AD PA GL GD+IV+ G + + V +AL +DN+ ++ R Sbjct: 200 PTSTVEQVADKYPAQQAGLQKGDKIVQIGKYKIS---EFDDVDKALDKVKDNKTTVKFER 256 Query: 346 QGSPMNLTITPRK 308 G ++ +TP+K Sbjct: 257 DGKTKSVELTPKK 269
>Y1105_STAAN (P63333) Hypothetical zinc metalloprotease SA1105 (EC 3.4.24.-)| Length = 428 Score = 35.4 bits (80), Expect = 0.15 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Frame = -2 Query: 523 PFAMIDDIADGSPAALDGLLLGDEIVKFGSVEAGGRLQERLVSEALSN-EDNQVSLLIIR 347 P + ++ +AD PA GL GD+IV+ G + + V +AL +DN+ ++ R Sbjct: 200 PTSTVEQVADKYPAQQAGLQKGDKIVQIGKYKIS---EFDDVDKALDKVKDNKTTVKFER 256 Query: 346 QGSPMNLTITPRK 308 G ++ +TP+K Sbjct: 257 DGKTKSVELTPKK 269
>Y1238_STAAR (Q6GHH3) Hypothetical zinc metalloprotease SAR1238 (EC 3.4.24.-)| Length = 428 Score = 34.7 bits (78), Expect = 0.25 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Frame = -2 Query: 523 PFAMIDDIADGSPAALDGLLLGDEIVKFGSVEAGGRLQERLVSEALSN-EDNQVSLLIIR 347 P + ++ +AD PA G+ GD+IV+ G + + V +AL +DN+ ++ R Sbjct: 200 PTSTVEQVADKYPAQQAGIQKGDKIVQIGKYKIS---EFDDVDKALDKVKDNKTTVKFER 256 Query: 346 QGSPMNLTITPRK 308 G ++ +TP+K Sbjct: 257 DGKTKSVELTPKK 269
>Y890_THEMA (Q9WZZ2) Hypothetical zinc metalloprotease TM0890 (EC 3.4.24.-)| Length = 501 Score = 33.9 bits (76), Expect = 0.43 Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 3/72 (4%) Frame = -2 Query: 511 IDDIADGSPAALDGLLLGDEIVKFGSVEAGGRLQERLVSEALSNEDNQ---VSLLIIRQG 341 ID++ GSPA GL GD I A + +SNE + V L+IIR G Sbjct: 125 IDEVVPGSPAEEAGLRRGDIIYSINDKIA-------FDTSIISNEIQKGLPVELVIIRNG 177 Query: 340 SPMNLTITPRKW 305 +L +TPR + Sbjct: 178 EKKSLRLTPRMY 189
>HPAG_ECOLI (Q46978) 4-hydroxyphenylacetate degradation bifunctional| isomerase/decarboxylase [Includes: 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.10) (HHDD isomerase) (5-carboxymethyl-2-hydroxymuconate delta-isomerase); 5-carboxymethyl-2-oxo Length = 429 Score = 33.5 bits (75), Expect = 0.57 Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 11/71 (15%) Frame = -2 Query: 571 GLSRNDPMEEDLVTRLPFAMI-----------DDIADGSPAALDGLLLGDEIVKFGSVEA 425 G R DL+ +PF + D IA G+P L ++ GDE+V VE Sbjct: 357 GELRQQGTTADLIFSVPFLIAYLSEFMTLNPGDMIATGTPKGLSDVVPGDEVVV--EVEG 414 Query: 424 GGRLQERLVSE 392 GRL R+VSE Sbjct: 415 VGRLVNRIVSE 425
>ECFE_YERPE (Q8ZH59) Protease ecfE (EC 3.4.24.-)| Length = 451 Score = 33.5 bits (75), Expect = 0.57 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 3/71 (4%) Frame = -2 Query: 517 AMIDDIADGSPAALDGLLLGDEIVKFGSVEAGGRLQERLVSEALSNEDNQVSLLII---R 347 +++ ++ GS A GL GD IVK G+L +R + L DN L++ R Sbjct: 224 SVLAEVQPGSAAQKAGLQAGDRIVK-----VNGQLLDRWQTFVLQVRDNPGQPLVLDIER 278 Query: 346 QGSPMNLTITP 314 + +P++LT+ P Sbjct: 279 ESTPLSLTLIP 289
>DEGS_HAEIN (P44947) Protease degS precursor (EC 3.4.21.-)| Length = 340 Score = 32.7 bits (73), Expect = 0.97 Identities = 19/65 (29%), Positives = 37/65 (56%) Frame = -2 Query: 514 MIDDIADGSPAALDGLLLGDEIVKFGSVEAGGRLQERLVSEALSNEDNQVSLLIIRQGSP 335 +I D++ SPAA G+ +GD I+K + E G +E + A + +++V + I+R G Sbjct: 269 VITDVSPNSPAAKSGIQVGDVILKLNNQE-GISAREMMQIIANTKPNSKVLVTILRLGKI 327 Query: 334 MNLTI 320 + + + Sbjct: 328 LQIPV 332
>Y638_RHILO (Q98MC1) Hypothetical zinc metalloprotease mll0638 (EC 3.4.24.-)| Length = 367 Score = 32.3 bits (72), Expect = 1.3 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 2/79 (2%) Frame = -2 Query: 514 MIDDIADGSPAALDGLLLGDEIVKF--GSVEAGGRLQERLVSEALSNEDNQVSLLIIRQG 341 M+ ++ SPAA G+ GD V VE G +Q RLVS + ++ +++R G Sbjct: 140 MVAEVTADSPAAKAGIQPGDRFVSVDGSKVETFGDVQ-RLVS---GRAGDTITFVMLRDG 195 Query: 340 SPMNLTITPRKWHGRGLMG 284 + +T TP+ + +G Sbjct: 196 KEVTVTATPQLMEQQDALG 214
>ECFE_SALTY (Q8ZRP1) Protease ecfE (EC 3.4.24.-)| Length = 450 Score = 32.3 bits (72), Expect = 1.3 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 2/69 (2%) Frame = -2 Query: 514 MIDDIADGSPAALDGLLLGDEIVKFGSVEAGGRLQE--RLVSEALSNEDNQVSLLIIRQG 341 ++ ++ S A+ GL GD IVK G L + + V+ N ++L I RQG Sbjct: 225 VLSEVQANSAASKAGLQAGDRIVKVD----GQPLTQWMKFVTFVRDNPGKPLALEIERQG 280 Query: 340 SPMNLTITP 314 S ++LT+TP Sbjct: 281 SALSLTLTP 289
>ECFE_SALTI (Q8Z9A4) Protease ecfE (EC 3.4.24.-)| Length = 450 Score = 32.3 bits (72), Expect = 1.3 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 2/69 (2%) Frame = -2 Query: 514 MIDDIADGSPAALDGLLLGDEIVKFGSVEAGGRLQE--RLVSEALSNEDNQVSLLIIRQG 341 ++ ++ S A+ GL GD IVK G L + + V+ N ++L I RQG Sbjct: 225 VLSEVQANSAASKAGLQAGDRIVKVD----GQPLTQWMKFVTFVRDNPGKPLALEIERQG 280 Query: 340 SPMNLTITP 314 S ++LT+TP Sbjct: 281 SALSLTLTP 289
>ECFE_PHOLU (Q9S342) Protease ecfE (EC 3.4.24.-) (Fragment)| Length = 226 Score = 32.0 bits (71), Expect = 1.7 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 5/87 (5%) Frame = -2 Query: 511 IDDIADGSPAALDGLLLGDEIVKFGSVEAGGRLQERLVSEALSNEDNQVSLLIIRQGSPM 332 ++ + GS A GL GD IVK GS E + S +N + + L + R G + Sbjct: 1 VEKVIPGSAAEKAGLQKGDRIVKVGSQEID--VWHTFTSFVSNNPNVPLELSVDRAGHII 58 Query: 331 NLTITP---RKWHGR--GLMGCHFRIL 266 +L++TP ++ GR G G RI+ Sbjct: 59 SLSMTPEVRQQSGGRKVGFAGVELRIV 85
>CRTI_CERNC (P48537) Phytoene dehydrogenase (EC 1.14.99.-) (Phytoene| desaturase) Length = 621 Score = 32.0 bits (71), Expect = 1.7 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 3/50 (6%) Frame = +2 Query: 179 LTETEWQELSAQVQTRKHTILQLNIDRPS*DSEMTP---HESSSMPLSWR 319 LT TE Q+ A + + TIL R + D +TP HES++ PLSW+ Sbjct: 420 LTPTEKQDWPAMISLARKTILSTIQSRTNVD--LTPLIIHESTNSPLSWK 467
>LAP4_MOUSE (Q80U72) LAP4 protein (Scribble homolog protein)| Length = 1612 Score = 31.6 bits (70), Expect = 2.2 Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 15/89 (16%) Frame = -2 Query: 511 IDDIADGSPAALDGLLLGDEIVKFGSVE---------------AGGRLQERLVSEALSNE 377 I +++ PAA G+ +GD++++ V AG +Q R+ E + Sbjct: 746 ISRVSEEGPAARAGVRVGDKLLEVNGVALQDAEHHEAVEALRGAGAAVQMRVWRERMVEP 805 Query: 376 DNQVSLLIIRQGSPMNLTITPRKWHGRGL 290 +N V++ +R +PR+W G GL Sbjct: 806 ENAVTITPLRPED----DYSPREWRGGGL 830
>L_VSVSJ (P03523) Large structural protein (L protein) (Transcriptase)| (Replicase) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)] Length = 2109 Score = 31.2 bits (69), Expect = 2.8 Identities = 22/71 (30%), Positives = 34/71 (47%) Frame = +2 Query: 398 NKPFLQSAPSLYTPKLHYLIPKQQAIQSSRRTICNVINHGKRKSGNQILFHGIISGQSTM 577 N + +A + T KL LI + +QS+ + +N+GK +F G+I G T Sbjct: 743 NNEKIMTAIKIGTGKLGLLINDDETMQSA-----DYLNYGKIP-----IFRGVIRGLETK 792 Query: 578 RWS*YTRTSRD 610 RWS T + D Sbjct: 793 RWSRVTCVTND 803
>PTN13_HUMAN (Q12923) Tyrosine-protein phosphatase non-receptor type 13 (EC| 3.1.3.48) (Protein-tyrosine phosphatase 1E) (PTP-E1) (hPTPE1) (PTP-BAS) (Protein-tyrosine phosphatase PTPL1) (Fas-associated protein-tyrosine phosphatase 1) (FAP-1) Length = 2485 Score = 31.2 bits (69), Expect = 2.8 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Frame = -2 Query: 511 IDDIADGSPAALDGLLL-GDEIVKFGSVEAGGRLQERLVSEALSNEDNQVSLLI 353 I +A G PA LDG L GD ++ SV G + E L N V+L+I Sbjct: 1123 ISSVAPGGPADLDGCLKPGDRLISVNSVSLEG-VSHHAAIEILQNAPEDVTLVI 1175
>HPAG_SALDU (Q9RPU5) 4-hydroxyphenylacetate degradation bifunctional| isomerase/decarboxylase [Includes: 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.10) (HHDD isomerase) (5-carboxymethyl-2-hydroxymuconate delta-isomerase); 5-carboxymethyl-2-oxo Length = 429 Score = 30.4 bits (67), Expect = 4.8 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 11/75 (14%) Frame = -2 Query: 571 GLSRNDPMEEDLVTRLPFAMI-----------DDIADGSPAALDGLLLGDEIVKFGSVEA 425 G R + DL+ +PF + D IA G+P L ++ GDE+V ++ Sbjct: 357 GELRQEGTTADLIFSIPFLISYLSEFMTLQPGDMIATGTPKGLSDVVPGDEVVL--EIKG 414 Query: 424 GGRLQERLVSEALSN 380 GRL ++V E +N Sbjct: 415 VGRLVNQIVCEESAN 429
>DLG5_HUMAN (Q8TDM6) Discs large homolog 5 (Placenta and prostate DLG) (Discs| large protein P-dlg) Length = 1809 Score = 30.4 bits (67), Expect = 4.8 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%) Frame = -2 Query: 511 IDDIADGSPA-ALDGLLLGDEIVKFGSVEAGGRLQERLVSEALSNED 374 + ++ D SPA DGL+ GD I+++GS++ + E + E L D Sbjct: 1416 VAEVEDDSPAKGPDGLVPGDLILEYGSLDVRNKTVEEVYVEMLKPRD 1462
>EEP_ENTFA (Q9RPP2) Probable protease eep (EC 3.4.24.-)| Length = 422 Score = 29.6 bits (65), Expect = 8.2 Identities = 19/76 (25%), Positives = 33/76 (43%) Frame = -2 Query: 535 VTRLPFAMIDDIADGSPAALDGLLLGDEIVKFGSVEAGGRLQERLVSEALSNEDNQVSLL 356 VT L I + PAA GL D+++ + + + E + N + ++ + Sbjct: 200 VTDLNTNQIGQVIPNGPAAEAGLKENDKVLSINNQKI--KKYEDFTTIVQKNPEKPLTFV 257 Query: 355 IIRQGSPMNLTITPRK 308 + R G LT+TP K Sbjct: 258 VERNGKEEQLTVTPEK 273
>PDZK1_MOUSE (Q9JIL4) PDZ domain-containing protein 1 (CFTR-associated protein| of 70 kDa) (Na/Pi cotransporter C-terminal-associated protein) (NaPi-Cap1) (Na(+)/H(+) exchanger regulatory factor 3) (Sodium-hydrogen exchanger regulatory factor 3) Length = 519 Score = 29.6 bits (65), Expect = 8.2 Identities = 18/55 (32%), Positives = 29/55 (52%) Frame = -2 Query: 514 MIDDIADGSPAALDGLLLGDEIVKFGSVEAGGRLQERLVSEALSNEDNQVSLLII 350 +I I +GSPA GLL GD +++ V + + V E + N V+LL++ Sbjct: 34 LIRVIEEGSPAEKAGLLDGDRVLRINGVFV-DKEEHAQVVELVRKSGNSVTLLVL 87 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 100,264,218 Number of Sequences: 219361 Number of extensions: 2143105 Number of successful extensions: 5768 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 5522 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5747 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6200242422 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
