ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags23e14 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC137622.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0118N20, complete sequence Length = 146139 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Minus Query: 37 cttcttttttcttctcgatata 58 |||||||||||||||||||||| Sbjct: 54469 cttcttttttcttctcgatata 54448
>gb|AC135430.2| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0671E09, complete sequence Length = 158472 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Minus Query: 37 cttcttttttcttctcgatata 58 |||||||||||||||||||||| Sbjct: 5899 cttcttttttcttctcgatata 5878
>emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0029H02, complete sequence Length = 173171 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Minus Query: 37 cttcttttttcttctcgatata 58 |||||||||||||||||||||| Sbjct: 96842 cttcttttttcttctcgatata 96821
>emb|AL662944.3|OSJN00134 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0028I23, complete sequence Length = 148736 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Minus Query: 37 cttcttttttcttctcgatata 58 |||||||||||||||||||||| Sbjct: 44104 cttcttttttcttctcgatata 44083
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Minus Query: 37 cttcttttttcttctcgatata 58 |||||||||||||||||||||| Sbjct: 24976257 cttcttttttcttctcgatata 24976236 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Plus Query: 37 cttcttttttcttctcgatata 58 |||||||||||||||||||||| Sbjct: 24725957 cttcttttttcttctcgatata 24725978 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Minus Query: 37 cttcttttttcttctcgatata 58 |||||||||||||||||||||| Sbjct: 20797379 cttcttttttcttctcgatata 20797358
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Plus Query: 37 cttcttttttcttctcgatata 58 |||||||||||||||||||||| Sbjct: 13170490 cttcttttttcttctcgatata 13170511
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Minus Query: 37 cttcttttttcttctcgatata 58 |||||||||||||||||||||| Sbjct: 6875226 cttcttttttcttctcgatata 6875205 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Minus Query: 38 ttcttttttcttctcgatata 58 ||||||||||||||||||||| Sbjct: 27106172 ttcttttttcttctcgatata 27106152
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Minus Query: 37 cttcttttttcttctcgatata 58 |||||||||||||||||||||| Sbjct: 13788397 cttcttttttcttctcgatata 13788376
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Minus Query: 37 cttcttttttcttctcgatata 58 |||||||||||||||||||||| Sbjct: 11719655 cttcttttttcttctcgatata 11719634
>dbj|AP003722.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1011A07 Length = 150590 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Minus Query: 37 cttcttttttcttctcgatata 58 |||||||||||||||||||||| Sbjct: 58823 cttcttttttcttctcgatata 58802
>dbj|AP005522.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0479H10 Length = 139874 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Minus Query: 37 cttcttttttcttctcgatata 58 |||||||||||||||||||||| Sbjct: 64751 cttcttttttcttctcgatata 64730
>emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0711G06, complete sequence Length = 148644 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Minus Query: 37 cttcttttttcttctcgatata 58 |||||||||||||||||||||| Sbjct: 104306 cttcttttttcttctcgatata 104285
>emb|AL606629.3|OSJN00061 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0091E11, complete sequence Length = 133856 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Plus Query: 37 cttcttttttcttctcgatata 58 |||||||||||||||||||||| Sbjct: 115480 cttcttttttcttctcgatata 115501
>emb|AL731785.2|CNS08C89 Oryza sativa chromosome 12, . BAC OSJNBa0037L20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 178827 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Plus Query: 37 cttcttttttcttctcgatata 58 |||||||||||||||||||||| Sbjct: 159693 cttcttttttcttctcgatata 159714
>gb|AC153152.4| Mus musculus BAC clone RP23-78F1 from chromosome 12, complete sequence Length = 184523 Score = 42.1 bits (21), Expect = 0.83 Identities = 24/25 (96%) Strand = Plus / Plus Query: 53 gatataaacacacacccacaagcac 77 |||| |||||||||||||||||||| Sbjct: 68629 gatacaaacacacacccacaagcac 68653
>gb|AC148868.3| Pan troglodytes BAC clone CH251-126E24 from Y, complete sequence Length = 170533 Score = 42.1 bits (21), Expect = 0.83 Identities = 24/25 (96%) Strand = Plus / Minus Query: 60 acacacacccacaagcacaaaatgc 84 |||||||||||||| |||||||||| Sbjct: 9330 acacacacccacaaacacaaaatgc 9306
>gb|AC129090.22| Medicago truncatula clone mth2-14i8, complete sequence Length = 163160 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Minus Query: 61 cacacacccacaagcacaaaa 81 ||||||||||||||||||||| Sbjct: 133664 cacacacccacaagcacaaaa 133644
>emb|AL133281.12| Human DNA sequence from clone RP11-252O2 on chromosome 9p22.1-22.3 Contains part of the SLC24A2 gene for solute carrier family 24 (sodium/potassium/calcium exchanger), member 2 (NCKX2) and a pseudogene similar to part of a novel gene, complete sequence Length = 158697 Score = 42.1 bits (21), Expect = 0.83 Identities = 24/25 (96%) Strand = Plus / Plus Query: 54 atataaacacacacccacaagcaca 78 |||||||||||||| |||||||||| Sbjct: 81346 atataaacacacacacacaagcaca 81370
>gb|AC098696.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0050E08, complete sequence Length = 180499 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Minus Query: 74 gcacaaaatgctacatatgtc 94 ||||||||||||||||||||| Sbjct: 140143 gcacaaaatgctacatatgtc 140123
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 42.1 bits (21), Expect = 0.83 Identities = 24/25 (96%) Strand = Plus / Minus Query: 60 acacacacccacaagcacaaaatgc 84 |||||||||||||| |||||||||| Sbjct: 13103529 acacacacccacaaacacaaaatgc 13103505 Score = 42.1 bits (21), Expect = 0.83 Identities = 24/25 (96%) Strand = Plus / Plus Query: 60 acacacacccacaagcacaaaatgc 84 |||||||||||||| |||||||||| Sbjct: 4795936 acacacacccacaaacacaaaatgc 4795960 Score = 42.1 bits (21), Expect = 0.83 Identities = 24/25 (96%) Strand = Plus / Plus Query: 60 acacacacccacaagcacaaaatgc 84 |||||||||||||| |||||||||| Sbjct: 1140618 acacacacccacaaacacaaaatgc 1140642
>gb|AC024594.9| Oryza sativa chromosome 10 BAC OSJNBa0093B11 genomic sequence, complete sequence Length = 178692 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Plus Query: 37 cttcttttttcttctcgatat 57 ||||||||||||||||||||| Sbjct: 64837 cttcttttttcttctcgatat 64857
>gb|AC159110.2| Pan troglodytes BAC clone CH251-533A11 from chromosome y, complete sequence Length = 174450 Score = 42.1 bits (21), Expect = 0.83 Identities = 24/25 (96%) Strand = Plus / Minus Query: 60 acacacacccacaagcacaaaatgc 84 |||||||||||||| |||||||||| Sbjct: 170352 acacacacccacaaacacaaaatgc 170328
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Minus Query: 37 cttcttttttcttctcgatat 57 ||||||||||||||||||||| Sbjct: 17609794 cttcttttttcttctcgatat 17609774 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Minus Query: 74 gcacaaaatgctacatatgtc 94 ||||||||||||||||||||| Sbjct: 3858347 gcacaaaatgctacatatgtc 3858327
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Plus Query: 37 cttcttttttcttctcgatat 57 ||||||||||||||||||||| Sbjct: 12016309 cttcttttttcttctcgatat 12016329
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Plus Query: 37 cttcttttttcttctcgatat 57 ||||||||||||||||||||| Sbjct: 4414935 cttcttttttcttctcgatat 4414955
>gb|AC149094.4| Pan troglodytes BAC clone CH251-268E10 from chromosome y, complete sequence Length = 175247 Score = 42.1 bits (21), Expect = 0.83 Identities = 24/25 (96%) Strand = Plus / Plus Query: 60 acacacacccacaagcacaaaatgc 84 |||||||||||||| |||||||||| Sbjct: 165905 acacacacccacaaacacaaaatgc 165929
>gb|AC148874.4| Pan troglodytes BAC clone CH251-429C12 from chromosome y, complete sequence Length = 168193 Score = 42.1 bits (21), Expect = 0.83 Identities = 24/25 (96%) Strand = Plus / Plus Query: 60 acacacacccacaagcacaaaatgc 84 |||||||||||||| |||||||||| Sbjct: 69750 acacacacccacaaacacaaaatgc 69774
>gb|AC008529.4|AC008529 Homo sapiens chromosome 5 clone CTC-475P15, complete sequence Length = 169557 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Plus Query: 36 ccttcttttttcttctcgata 56 ||||||||||||||||||||| Sbjct: 85930 ccttcttttttcttctcgata 85950
>dbj|AP005164.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0054L03 Length = 183623 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Plus Query: 37 cttcttttttcttctcgatat 57 ||||||||||||||||||||| Sbjct: 177729 cttcttttttcttctcgatat 177749
>dbj|AP003628.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0473H04 Length = 155204 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Minus Query: 38 ttcttttttcttctcgatata 58 ||||||||||||||||||||| Sbjct: 74982 ttcttttttcttctcgatata 74962
>dbj|AP005422.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0441A12 Length = 185437 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Plus Query: 37 cttcttttttcttctcgatat 57 ||||||||||||||||||||| Sbjct: 120789 cttcttttttcttctcgatat 120809
>dbj|AP003882.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1134_B10 Length = 115074 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Plus Query: 37 cttcttttttcttctcgatat 57 ||||||||||||||||||||| Sbjct: 62111 cttcttttttcttctcgatat 62131
>emb|BX284681.4| Zebrafish DNA sequence from clone DKEY-197D18 in linkage group 20, complete sequence Length = 96203 Score = 42.1 bits (21), Expect = 0.83 Identities = 24/25 (96%) Strand = Plus / Minus Query: 55 tataaacacacacccacaagcacaa 79 ||||||||||||| ||||||||||| Sbjct: 78694 tataaacacacacacacaagcacaa 78670
>gb|AC159650.5| Pan troglodytes BAC clone CH251-379D1 from chromosome y, complete sequence Length = 214370 Score = 42.1 bits (21), Expect = 0.83 Identities = 24/25 (96%) Strand = Plus / Minus Query: 60 acacacacccacaagcacaaaatgc 84 |||||||||||||| |||||||||| Sbjct: 98507 acacacacccacaaacacaaaatgc 98483
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Minus Query: 37 cttcttttttcttctcgatat 57 ||||||||||||||||||||| Sbjct: 17618834 cttcttttttcttctcgatat 17618814 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Minus Query: 74 gcacaaaatgctacatatgtc 94 ||||||||||||||||||||| Sbjct: 3858268 gcacaaaatgctacatatgtc 3858248
>gb|AC121143.12| Mus musculus chromosome 1, clone RP24-177B16, complete sequence Length = 176008 Score = 40.1 bits (20), Expect = 3.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 53 gatataaacacacacccacaagcacaaa 80 |||||||||||| || |||||||||||| Sbjct: 55858 gatataaacacatacacacaagcacaaa 55885
>gb|AC166902.2| Mus musculus BAC clone RP24-425L9 from chromosome 9, complete sequence Length = 184017 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 60 acacacacccacaagcacaaaatg 83 |||||||| ||||||||||||||| Sbjct: 124550 acacacacacacaagcacaaaatg 124573
>gb|AC109247.14| Mus musculus chromosome 9, clone RP23-462C14, complete sequence Length = 225020 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 gatataaacacacacccaca 72 |||||||||||||||||||| Sbjct: 110327 gatataaacacacacccaca 110346
>emb|AL662909.9| Mouse DNA sequence from clone RP23-189I13 on chromosome 11 Contains the 5' end of the Odz2 gene for odd Oz/ten-m homolog 2 (Drosophila) and a CpG island, complete sequence Length = 201564 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 cacacacccacaagcacaaa 80 |||||||||||||||||||| Sbjct: 112936 cacacacccacaagcacaaa 112917
>emb|BX897725.7| Zebrafish DNA sequence from clone CH211-244P18 in linkage group 20 Contains the gene for a novel protein similar to vertebrate delta-like 4 (Drosophila) (DLL4), the vps18 gene for vacuolar protein sorting protein 18, the gene for a novel protein containing an SNF2 family N-terminal domain and a Helicase conserved C-terminal domain, the gene for a novel protein similar to vertebrate ras homolog gene family, member V (RHOV), the gene for a novel protein containing a ChaC-like protein domain and three CpG islands, complete sequence Length = 170125 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 ttttttcttctcgatataaa 60 |||||||||||||||||||| Sbjct: 167676 ttttttcttctcgatataaa 167695
>gb|AC078850.5| Homo sapiens BAC clone RP11-184M15 from 4, complete sequence Length = 180194 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 cacacacccacaagcacaaa 80 |||||||||||||||||||| Sbjct: 28248 cacacacccacaagcacaaa 28229
>gb|AC060788.11| Homo sapiens chromosome 8, clone CTD-2008O4, complete sequence Length = 177717 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 tacatctcaagccaaggaac 192 |||||||||||||||||||| Sbjct: 34605 tacatctcaagccaaggaac 34586
>gb|AY828230.1| Allactaga major 4.5S RNA(H) gene, complete sequence Length = 3969 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 aaacacacacccacaagcac 77 |||||||||||||||||||| Sbjct: 3063 aaacacacacccacaagcac 3044
>emb|AL929049.4| Zebrafish DNA sequence from clone DKEY-14A13 in linkage group 20, complete sequence Length = 223182 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 ttttttcttctcgatataaa 60 |||||||||||||||||||| Sbjct: 174915 ttttttcttctcgatataaa 174934 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,091,755 Number of Sequences: 3902068 Number of extensions: 2091755 Number of successful extensions: 54420 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54131 Number of HSP's gapped (non-prelim): 289 length of query: 253 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 231 effective length of database: 17,147,199,772 effective search space: 3961003147332 effective search space used: 3961003147332 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
