ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags23e02 |
|---|---|
| Clone Library Name | barley_pub |
>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)| (High molecular weight salivary mucin MG1) (Sublingual gland mucin) Length = 5703 Score = 34.3 bits (77), Expect = 0.41 Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 1/121 (0%) Frame = +1 Query: 154 GRPSGI-GATRQAVSPSVIFTWLVPLLKIKSSSXXXXXXXXXXXXXXXXXXXXVRATEAI 330 G PS G T PS T VP ++S V ++ A Sbjct: 3123 GTPSSTPGTTWILTEPSTTATVTVPTGSTATASSTRATAGTLKVLTSTATTPTVISSRAT 3182 Query: 331 SMLSAMNPASIAAVARSPTTRLTTAVNAFTEFLTAASILSSAVNMSHTITPAVKSNTATP 510 S ++ A+ + TT T+V A + ++S+ ++ +S T TP +TATP Sbjct: 3183 PSSSPGTATALPALRSTATTPTATSVTA----IPSSSLGTAWTRLSQTTTPTATMSTATP 3238 Query: 511 T 513 + Sbjct: 3239 S 3239
>ANP_NOTCO (P24856) Ice-structuring glycoprotein precursor (ISGP) (Antifreeze| glycopeptide polyprotein) (AFGP polyprotein) [Contains: AFGP7 (AFGP 7); AFGP8 (AFGP 8); AFGP8-like] (Fragment) Length = 790 Score = 33.5 bits (75), Expect = 0.71 Identities = 30/141 (21%), Positives = 50/141 (35%) Frame = +1 Query: 187 AVSPSVIFTWLVPLLKIKSSSXXXXXXXXXXXXXXXXXXXXVRATEAISMLSAMNPASIA 366 A +P++IF ++ AT A + A + A Sbjct: 134 AATPALIFAATAATAATPATPAFHFAATAATPATAATPALIFAATAATAATPATAALNFA 193 Query: 367 AVARSPTTRLTTAVNAFTEFLTAASILSSAVNMSHTITPAVKSNTATPTFPKASNV*VTT 546 A A +P T T A+ TAA+ ++A+N + T A TA F + T Sbjct: 194 ATAATPATAATPALIFAATAATAATPATAALNFAATAATAATPATAACNFAATAATPATA 253 Query: 547 GFP*PACAIMLSYTCSFCISP 609 P A++ + T + +P Sbjct: 254 ATP----ALIFAATAATAATP 270 Score = 33.1 bits (74), Expect = 0.92 Identities = 30/141 (21%), Positives = 50/141 (35%) Frame = +1 Query: 187 AVSPSVIFTWLVPLLKIKSSSXXXXXXXXXXXXXXXXXXXXVRATEAISMLSAMNPASIA 366 A +P++IF +++ AT A + A A Sbjct: 542 AATPALIFAATAATAATPATAALNFAATAATPATAATPALIFAATAATAATPATPAFHFA 601 Query: 367 AVARSPTTRLTTAVNAFTEFLTAASILSSAVNMSHTITPAVKSNTATPTFPKASNV*VTT 546 A A +P T T A+ TAA+ ++A+N + T A TA F + T Sbjct: 602 ATAATPATAATPALIFAATAATAATPATAALNFAATAATAATPATAALNFAATAATPATA 661 Query: 547 GFP*PACAIMLSYTCSFCISP 609 P A++ + T + +P Sbjct: 662 ATP----ALIFAATAATAATP 678 Score = 33.1 bits (74), Expect = 0.92 Identities = 26/110 (23%), Positives = 42/110 (38%) Frame = +1 Query: 187 AVSPSVIFTWLVPLLKIKSSSXXXXXXXXXXXXXXXXXXXXVRATEAISMLSAMNPASIA 366 A +P++IF +++ AT A + A + A Sbjct: 287 AATPALIFAATAATAATPATAALNFAATAATPATAATPALIFAATAATAATPATAALNFA 346 Query: 367 AVARSPTTRLTTAVNAFTEFLTAASILSSAVNMSHTITPAVKSNTATPTF 516 A A +P T T A+ TAA+ ++A+N + T A + ATP F Sbjct: 347 ATAATPATAATPALIFAATAATAATPATAALNFA--ATAATAATPATPAF 394 Score = 31.2 bits (69), Expect = 3.5 Identities = 26/98 (26%), Positives = 40/98 (40%) Frame = +1 Query: 316 ATEAISMLSAMNPASIAAVARSPTTRLTTAVNAFTEFLTAASILSSAVNMSHTITPAVKS 495 AT A + A + AA A +P T T A+ TAA+ ++A N + T A Sbjct: 466 ATAATAATPATAALNFAATAATPATAATPALIFAATAATAATPATAAFNFAATAATAATP 525 Query: 496 NTATPTFPKASNV*VTTGFP*PACAIMLSYTCSFCISP 609 TA F + T P A++ + T + +P Sbjct: 526 ATAALNFAATAATPATAATP----ALIFAATAATAATP 559 Score = 30.0 bits (66), Expect = 7.8 Identities = 25/98 (25%), Positives = 41/98 (41%) Frame = +1 Query: 316 ATEAISMLSAMNPASIAAVARSPTTRLTTAVNAFTEFLTAASILSSAVNMSHTITPAVKS 495 AT A + A + AA A +P T T A+ TAA+ ++A++ + T A Sbjct: 415 ATAATAATPATAALNFAATAATPATAATPALIFAATAATAATPATAALHFAATAATAATP 474 Query: 496 NTATPTFPKASNV*VTTGFP*PACAIMLSYTCSFCISP 609 TA F + T P A++ + T + +P Sbjct: 475 ATAALNFAATAATPATAATP----ALIFAATAATAATP 508
>FADE_ECOLI (Q47146) Acyl-coenzyme A dehydrogenase (EC 1.3.99.-) (ACDH)| Length = 814 Score = 33.1 bits (74), Expect = 0.92 Identities = 34/153 (22%), Positives = 63/153 (41%) Frame = -3 Query: 578 NIIAQAGQGKPVVTYTFEALGKVGVAVLLFTAGVMVWDIFTAEDKMEAAVRNSVNALTAV 399 N +A+A QG P+ T E + ++++F G + + E+ MEAA N VNA + Sbjct: 481 NFLARAYQGAPIAI-TVEGANILTRSMMIFGQGAIRCHPYVLEE-MEAAKNNDVNAFDKL 538 Query: 398 VSLVVGDLATAAIEAGFIALNIEIASVALTXXXXXXXXXXXXXXXXXXXALLDLIFSSGT 219 + +G + + + + ++ L + S T L D+ + Sbjct: 539 LFKHIGHVGSNKVRSFWLGLTRGLTSSTPTGDATKRYYQHLNRLSANLALLSDVSMAVLG 598 Query: 218 SQVKITDGLTACRVAPMPDGLPLARLVKHNYPD 120 +K + ++A R+ + L LA V Y D Sbjct: 599 GSLKRRERISA-RLGDILSQLYLASAVLKRYDD 630
>SP96_DICDI (P14328) Spore coat protein SP96| Length = 600 Score = 31.6 bits (70), Expect = 2.7 Identities = 35/136 (25%), Positives = 48/136 (35%), Gaps = 3/136 (2%) Frame = +1 Query: 148 ASGRPSGIGATRQAVSPSVIFTWLVPLLKIKSSSXXXXXXXXXXXXXXXXXXXXVRATEA 327 AS PS A+ SPS P SSS ++ A Sbjct: 465 ASSSPSSSAASS---SPSSSAASSSPSSSASSSSSPSSSASSSSAPSSSASSSSAPSSSA 521 Query: 328 ISMLSAMNPASIAAVARSPTTRLTTAVNAFTEFLTAA--SILSSAVNMSHTI-TPAVKSN 498 S ++ + AS AA + T T A T T A + ++A + TI T + Sbjct: 522 SSSSASSSSASSAATTAATTIATTAATTTATTTATTATTTATTTATTTAATIATTTAATT 581 Query: 499 TATPTFPKASNV*VTT 546 TAT T A+ TT Sbjct: 582 TATTTATTATTTATTT 597
>PACC_YARLI (P78978) pH-response transcription factor pacC/RIM101| Length = 585 Score = 30.8 bits (68), Expect = 4.6 Identities = 21/76 (27%), Positives = 30/76 (39%) Frame = -2 Query: 483 RCNGVGHIHGRGQDGGSG*EFSECINCSS*PCGGRSSNSCYRSWIHST*HRNRFCSSHGN 304 R G + +G G DG E + C PCG ++ S + + H C +H Sbjct: 129 RSEGSPNTNGSGSDG-------ENLVCKWGPCG-KTFGSAEKLYAH-------LCDAHVG 173 Query: 303 RSSRWNRNWCSNWDRC 256 R N + NWD C Sbjct: 174 RKCTHNLSLVCNWDNC 189
>ILVC_HAEIN (P44822) Ketol-acid reductoisomerase (EC 1.1.1.86)| (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 491 Score = 30.4 bits (67), Expect = 6.0 Identities = 20/73 (27%), Positives = 30/73 (41%) Frame = -3 Query: 722 HFVPNQFSKWLKESKILFEDLVQDNMGKLGFRGAFKNLGDIQKLQVYDNIIAQAGQGKPV 543 HF + W K LF ++ GK F A K G I + + +DN + K Sbjct: 310 HFSATMMADWANGDKDLFA--WREATGKTAFENAPKYDGKISEQEYFDNGVLMIAMVKAG 367 Query: 542 VTYTFEALGKVGV 504 V F+A+ G+ Sbjct: 368 VELAFDAMVASGI 380
>ILVC_HAEI8 (Q4QMN4) Ketol-acid reductoisomerase (EC 1.1.1.86)| (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 492 Score = 30.4 bits (67), Expect = 6.0 Identities = 20/73 (27%), Positives = 30/73 (41%) Frame = -3 Query: 722 HFVPNQFSKWLKESKILFEDLVQDNMGKLGFRGAFKNLGDIQKLQVYDNIIAQAGQGKPV 543 HF + W K LF ++ GK F A K G I + + +DN + K Sbjct: 311 HFSATMMADWANGDKDLFA--WREATGKTAFENAPKYDGKISEQEYFDNGVLMIAMVKAG 368 Query: 542 VTYTFEALGKVGV 504 V F+A+ G+ Sbjct: 369 VELAFDAMVASGI 381
>CP191_CARAU (P79690) Cytochrome P450 19 type 1 (EC 1.14.14.1) (Brain aromatase)| (CYPXIXA1) (Estrogen synthetase) (P-450AROM) Length = 510 Score = 30.0 bits (66), Expect = 7.8 Identities = 16/53 (30%), Positives = 30/53 (56%) Frame = -3 Query: 692 LKESKILFEDLVQDNMGKLGFRGAFKNLGDIQKLQVYDNIIAQAGQGKPVVTY 534 LK++ ++ E +VQ+ ++G R D+QKL V + I ++ + PVV + Sbjct: 320 LKQNSVVEEQIVQEIQSQIGERDV--ESADLQKLNVLERFIKESLRFHPVVDF 370
>Y1312_PYRHO (O59054) UPF0212 protein PH1312| Length = 104 Score = 30.0 bits (66), Expect = 7.8 Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 8/76 (10%) Frame = -3 Query: 512 VGVAVLLFTAGVMVWDIFTAEDKMEAAVRNSVNALTA----VVSLVVG----DLATAAIE 357 +G +++ A ++V D+ + E+ +EAAV VNAL V + +G + A E Sbjct: 1 MGDYIVVLEAPIIVKDVESVEEAIEAAVNKVVNALEKEKLDFVRVELGYSKCPVCGAHFE 60 Query: 356 AGFIALNIEIASVALT 309 + F+ N+ + + LT Sbjct: 61 SAFVVGNVGLVGIYLT 76 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 103,460,103 Number of Sequences: 219361 Number of extensions: 2253662 Number of successful extensions: 6615 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 6182 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6574 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7706249192 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
