| Clone Name | rbags23e02 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X82937.1|HVRNAJIP H.vulgare mRNA for jasmonate induced protein Length = 1334 Score = 587 bits (296), Expect = e-164 Identities = 536/616 (87%) Strand = Plus / Minus Query: 124 gggtaattgtgtttcaccagacgagcaagtgggagaccatcgggcatcggagccacacgg 183 ||||||||||| || || |||||||| ||| |||||||| ||||| || ||||||||| Sbjct: 1138 gggtaattgtgcttaactagacgagcgagttcgagaccatgaggcataggcgccacacgg 1079 Query: 184 caagcagtaagcccgtctgttatcttcacctggctcgttccactgctgaaaatcaagtca 243 ||| | ||||||||||||||||||||||||| ||| |||||||||||||||||||||||| Sbjct: 1078 caaactgtaagcccgtctgttatcttcaccttgctagttccactgctgaaaatcaagtca 1019 Query: 244 agcagcgcacctgcagcgatcccaattactacaccaattccgattccaacgactgctccg 303 ||||||||||||||||| |||||||| | |||||||||| | || |||||| |||| Sbjct: 1018 agcagcgcacctgcagctatcccaatgagcgcaccaattccaaaaccgacgactcctcca 959 Query: 304 attaccgtgagagctacagaagcgatttcgatgttaagtgctatgaatccagcttctata 363 |||||||||| ||| ||||||| |||||||||| ||||||| |||||||||||||| | Sbjct: 958 attaccgtgacagccgcagaagcaatttcgatgtctagtgctacgaatccagcttctaca 899 Query: 364 gcagctgttgctagatctcccaccacaaggctaactactgcagttaatgcattcactgaa 423 |||| || ||| ||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct: 898 gcagtagtaactatttctcccacctcaaggttaactactgcagttaacgcatttactgaa 839 Query: 424 ttcctaaccgctgcctccatcttgtcctctgccgtgaatatgtcccacaccattacacct 483 | ||||||||||||||||| ||| || ||||| ||| ||||||||||||||||| || || Sbjct: 838 tccctaaccgctgcctccagcttatcttctgctgtgtatatgtcccacaccattgcagct 779 Query: 484 gctgtaaaaagcaacactgcaaccccgacttttcccaaagcttcgaatgtgtaagtcacc 543 |||||||||| || ||||| ||||||||||||||||||||||| |||| |||||||||| Sbjct: 778 gctgtaaaaactaaaactgccaccccgacttttcccaaagcttcaaatgagtaagtcacc 719 Query: 544 acgggttttccttgaccggcttgtgcaataatgttgtcatatacctgtagcttctgtata 603 || | ||||||||| || |||| |||||||| |||||||||||||||||||| || ||| Sbjct: 718 acagattttccttgtcccgcttccgcaataatattgtcatatacctgtagcttttggata 659 Query: 604 tcacccaagttcttgaaagcacccctaaaaccaagttttcccatattatcttgcacaaga 663 ||| ||||||| |||||||| |||||||||||||| ||| |||||| |||||||||||| Sbjct: 658 tcatccaagtttttgaaagcccccctaaaaccaagctttgacatattttcttgcacaaga 599 Query: 664 tcctcaaacaagattttactctccttgagccattttgagaattgatttggtacaaaatgc 723 |||||||||| |||||| | |||||||||||||||||||||||||||||| |||| || Sbjct: 598 tcctcaaacatgattttgttttccttgagccattttgagaattgatttggtgcaaagtgt 539 Query: 724 tgaaactttttggcat 739 |||||||||||||||| Sbjct: 538 tgaaactttttggcat 523
>emb|BX950853.16| Zebrafish DNA sequence from clone DKEY-25L21 in linkage group 17, complete sequence Length = 214513 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 460 aatatgtcccacaccattacacc 482 ||||||||||||||||||||||| Sbjct: 164153 aatatgtcccacaccattacacc 164131
>emb|BX255899.5| Zebrafish DNA sequence from clone CH211-279I13 in linkage group 6, complete sequence Length = 149442 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Plus Query: 460 aatatgtcccacaccattacacc 482 ||||||||||||||||||||||| Sbjct: 40294 aatatgtcccacaccattacacc 40316
>emb|AL928622.9| Zebrafish DNA sequence from clone DKEY-31O13, complete sequence Length = 230557 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 460 aatatgtcccacaccattacacc 482 ||||||||||||||||||||||| Sbjct: 135635 aatatgtcccacaccattacacc 135613
>gb|AC150243.3| Rhinolophus ferrumequinum clone VMRC7-394F3, complete sequence Length = 110295 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Plus Query: 26 gtattattttattttaggagtg 47 |||||||||||||||||||||| Sbjct: 80777 gtattattttattttaggagtg 80798
>gb|AC109633.5| Homo sapiens chromosome 8, clone CTD-2024D23, complete sequence Length = 134242 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Minus Query: 27 tattattttattttaggagtgc 48 |||||||||||||||||||||| Sbjct: 41776 tattattttattttaggagtgc 41755
>gb|DP000028.1| Rhinolophus ferrumequinum target 1 genomic scaffold Length = 1756392 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Plus Query: 26 gtattattttattttaggagtg 47 |||||||||||||||||||||| Sbjct: 1173400 gtattattttattttaggagtg 1173421
>gb|AC101277.16| Mus musculus chromosome 1, clone RP23-101P2, complete sequence Length = 207021 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 478 acacctgctgtaaaaagcaac 498 ||||||||||||||||||||| Sbjct: 62861 acacctgctgtaaaaagcaac 62841
>ref|XM_754975.1| Ustilago maydis 521 hypothetical protein (UM03921.1) partial mRNA Length = 5049 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 679 ttactctccttgagccatttt 699 ||||||||||||||||||||| Sbjct: 1379 ttactctccttgagccatttt 1359
>gb|CP000107.1| Ehrlichia canis str. Jake, complete genome Length = 1315030 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 356 cttctatagcagctgttgcta 376 ||||||||||||||||||||| Sbjct: 324139 cttctatagcagctgttgcta 324159
>dbj|AK082181.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length enriched library, clone:C230018K03 product:unclassifiable, full insert sequence Length = 2099 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 478 acacctgctgtaaaaagcaac 498 ||||||||||||||||||||| Sbjct: 1146 acacctgctgtaaaaagcaac 1126
>gb|AC009275.8| Homo sapiens chromosome 7 clone RP11-38M8, complete sequence Length = 154406 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 370 gttgctagatctcccaccaca 390 ||||||||||||||||||||| Sbjct: 108182 gttgctagatctcccaccaca 108202
>gb|AC017026.8| Homo sapiens BAC clone RP11-269L4 from 2, complete sequence Length = 37049 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 396 aactactgcagttaatgcatt 416 ||||||||||||||||||||| Sbjct: 27724 aactactgcagttaatgcatt 27744
>gb|AC105916.4| Homo sapiens BAC clone RP11-180A12 from 4, complete sequence Length = 104269 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 70 acttagacaaagacataagtatata 94 |||||||||||||||| |||||||| Sbjct: 75525 acttagacaaagacatcagtatata 75549
>gb|AC140367.3| Mus musculus BAC clone RP24-226L19 from 1, complete sequence Length = 183563 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 478 acacctgctgtaaaaagcaac 498 ||||||||||||||||||||| Sbjct: 28636 acacctgctgtaaaaagcaac 28656 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,092,949 Number of Sequences: 3902068 Number of extensions: 7092949 Number of successful extensions: 149156 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 149095 Number of HSP's gapped (non-prelim): 60 length of query: 739 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 716 effective length of database: 17,143,297,704 effective search space: 12274601156064 effective search space used: 12274601156064 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)