ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags23e02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|X82937.1|HVRNAJIP H.vulgare mRNA for jasmonate induced protein 587 e-164
2emb|BX950853.16| Zebrafish DNA sequence from clone DKEY-25L21 in... 46 0.16
3emb|BX255899.5| Zebrafish DNA sequence from clone CH211-279I13 i... 46 0.16
4emb|AL928622.9| Zebrafish DNA sequence from clone DKEY-31O13, co... 46 0.16
5gb|AC150243.3| Rhinolophus ferrumequinum clone VMRC7-394F3, comp... 44 0.65
6gb|AC109633.5| Homo sapiens chromosome 8, clone CTD-2024D23, com... 44 0.65
7gb|DP000028.1| Rhinolophus ferrumequinum target 1 genomic scaffold 44 0.65
8gb|AC101277.16| Mus musculus chromosome 1, clone RP23-101P2, com... 42 2.6
9ref|XM_754975.1| Ustilago maydis 521 hypothetical protein (UM039... 42 2.6
10gb|CP000107.1| Ehrlichia canis str. Jake, complete genome 42 2.6
11dbj|AK082181.1| Mus musculus 0 day neonate cerebellum cDNA, RIKE... 42 2.6
12gb|AC009275.8| Homo sapiens chromosome 7 clone RP11-38M8, comple... 42 2.6
13gb|AC017026.8| Homo sapiens BAC clone RP11-269L4 from 2, complet... 42 2.6
14gb|AC105916.4| Homo sapiens BAC clone RP11-180A12 from 4, comple... 42 2.6
15gb|AC140367.3| Mus musculus BAC clone RP24-226L19 from 1, comple... 42 2.6

>emb|X82937.1|HVRNAJIP H.vulgare mRNA for jasmonate induced protein
          Length = 1334

 Score =  587 bits (296), Expect = e-164
 Identities = 536/616 (87%)
 Strand = Plus / Minus

                                                                        
Query: 124  gggtaattgtgtttcaccagacgagcaagtgggagaccatcgggcatcggagccacacgg 183
            ||||||||||| || || |||||||| |||  ||||||||  ||||| || |||||||||
Sbjct: 1138 gggtaattgtgcttaactagacgagcgagttcgagaccatgaggcataggcgccacacgg 1079

                                                                        
Query: 184  caagcagtaagcccgtctgttatcttcacctggctcgttccactgctgaaaatcaagtca 243
            ||| | ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 1078 caaactgtaagcccgtctgttatcttcaccttgctagttccactgctgaaaatcaagtca 1019

                                                                        
Query: 244  agcagcgcacctgcagcgatcccaattactacaccaattccgattccaacgactgctccg 303
            ||||||||||||||||| |||||||| |   |||||||||| |  || |||||| |||| 
Sbjct: 1018 agcagcgcacctgcagctatcccaatgagcgcaccaattccaaaaccgacgactcctcca 959

                                                                        
Query: 304  attaccgtgagagctacagaagcgatttcgatgttaagtgctatgaatccagcttctata 363
            |||||||||| |||  ||||||| ||||||||||  ||||||| |||||||||||||| |
Sbjct: 958  attaccgtgacagccgcagaagcaatttcgatgtctagtgctacgaatccagcttctaca 899

                                                                        
Query: 364  gcagctgttgctagatctcccaccacaaggctaactactgcagttaatgcattcactgaa 423
            ||||  ||  |||  ||||||||| ||||| |||||||||||||||| ||||| ||||||
Sbjct: 898  gcagtagtaactatttctcccacctcaaggttaactactgcagttaacgcatttactgaa 839

                                                                        
Query: 424  ttcctaaccgctgcctccatcttgtcctctgccgtgaatatgtcccacaccattacacct 483
            | ||||||||||||||||| ||| || ||||| ||| ||||||||||||||||| || ||
Sbjct: 838  tccctaaccgctgcctccagcttatcttctgctgtgtatatgtcccacaccattgcagct 779

                                                                        
Query: 484  gctgtaaaaagcaacactgcaaccccgacttttcccaaagcttcgaatgtgtaagtcacc 543
            ||||||||||  || ||||| ||||||||||||||||||||||| |||| ||||||||||
Sbjct: 778  gctgtaaaaactaaaactgccaccccgacttttcccaaagcttcaaatgagtaagtcacc 719

                                                                        
Query: 544  acgggttttccttgaccggcttgtgcaataatgttgtcatatacctgtagcttctgtata 603
            || | ||||||||| || ||||  |||||||| |||||||||||||||||||| || |||
Sbjct: 718  acagattttccttgtcccgcttccgcaataatattgtcatatacctgtagcttttggata 659

                                                                        
Query: 604  tcacccaagttcttgaaagcacccctaaaaccaagttttcccatattatcttgcacaaga 663
            ||| ||||||| |||||||| |||||||||||||| |||  |||||| ||||||||||||
Sbjct: 658  tcatccaagtttttgaaagcccccctaaaaccaagctttgacatattttcttgcacaaga 599

                                                                        
Query: 664  tcctcaaacaagattttactctccttgagccattttgagaattgatttggtacaaaatgc 723
            |||||||||| ||||||  | |||||||||||||||||||||||||||||| |||| || 
Sbjct: 598  tcctcaaacatgattttgttttccttgagccattttgagaattgatttggtgcaaagtgt 539

                            
Query: 724  tgaaactttttggcat 739
            ||||||||||||||||
Sbjct: 538  tgaaactttttggcat 523



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>emb|BX950853.16| Zebrafish DNA sequence from clone DKEY-25L21 in linkage group 17,
              complete sequence
          Length = 214513

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 460    aatatgtcccacaccattacacc 482
              |||||||||||||||||||||||
Sbjct: 164153 aatatgtcccacaccattacacc 164131



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>emb|BX255899.5| Zebrafish DNA sequence from clone CH211-279I13 in linkage group 6,
             complete sequence
          Length = 149442

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 460   aatatgtcccacaccattacacc 482
             |||||||||||||||||||||||
Sbjct: 40294 aatatgtcccacaccattacacc 40316



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>emb|AL928622.9| Zebrafish DNA sequence from clone DKEY-31O13, complete sequence
          Length = 230557

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 460    aatatgtcccacaccattacacc 482
              |||||||||||||||||||||||
Sbjct: 135635 aatatgtcccacaccattacacc 135613



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>gb|AC150243.3| Rhinolophus ferrumequinum clone VMRC7-394F3, complete sequence
          Length = 110295

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 26    gtattattttattttaggagtg 47
             ||||||||||||||||||||||
Sbjct: 80777 gtattattttattttaggagtg 80798



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>gb|AC109633.5| Homo sapiens chromosome 8, clone CTD-2024D23, complete sequence
          Length = 134242

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 27    tattattttattttaggagtgc 48
             ||||||||||||||||||||||
Sbjct: 41776 tattattttattttaggagtgc 41755



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>gb|DP000028.1| Rhinolophus ferrumequinum target 1 genomic scaffold
          Length = 1756392

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 26      gtattattttattttaggagtg 47
               ||||||||||||||||||||||
Sbjct: 1173400 gtattattttattttaggagtg 1173421



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>gb|AC101277.16| Mus musculus chromosome 1, clone RP23-101P2, complete sequence
          Length = 207021

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 478   acacctgctgtaaaaagcaac 498
             |||||||||||||||||||||
Sbjct: 62861 acacctgctgtaaaaagcaac 62841



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>ref|XM_754975.1| Ustilago maydis 521 hypothetical protein (UM03921.1) partial mRNA
          Length = 5049

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 679  ttactctccttgagccatttt 699
            |||||||||||||||||||||
Sbjct: 1379 ttactctccttgagccatttt 1359



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>gb|CP000107.1| Ehrlichia canis str. Jake, complete genome
          Length = 1315030

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 356    cttctatagcagctgttgcta 376
              |||||||||||||||||||||
Sbjct: 324139 cttctatagcagctgttgcta 324159



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>dbj|AK082181.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:C230018K03
            product:unclassifiable, full insert sequence
          Length = 2099

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 478  acacctgctgtaaaaagcaac 498
            |||||||||||||||||||||
Sbjct: 1146 acacctgctgtaaaaagcaac 1126



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>gb|AC009275.8| Homo sapiens chromosome 7 clone RP11-38M8, complete sequence
          Length = 154406

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 370    gttgctagatctcccaccaca 390
              |||||||||||||||||||||
Sbjct: 108182 gttgctagatctcccaccaca 108202



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>gb|AC017026.8| Homo sapiens BAC clone RP11-269L4 from 2, complete sequence
          Length = 37049

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 396   aactactgcagttaatgcatt 416
             |||||||||||||||||||||
Sbjct: 27724 aactactgcagttaatgcatt 27744



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>gb|AC105916.4| Homo sapiens BAC clone RP11-180A12 from 4, complete sequence
          Length = 104269

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 70    acttagacaaagacataagtatata 94
             |||||||||||||||| ||||||||
Sbjct: 75525 acttagacaaagacatcagtatata 75549



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>gb|AC140367.3| Mus musculus BAC clone RP24-226L19 from 1, complete sequence
          Length = 183563

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 478   acacctgctgtaaaaagcaac 498
             |||||||||||||||||||||
Sbjct: 28636 acacctgctgtaaaaagcaac 28656


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,092,949
Number of Sequences: 3902068
Number of extensions: 7092949
Number of successful extensions: 149156
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 149095
Number of HSP's gapped (non-prelim): 60
length of query: 739
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 716
effective length of database: 17,143,297,704
effective search space: 12274601156064
effective search space used: 12274601156064
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
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