ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags22o24 |
|---|---|
| Clone Library Name | barley_pub |
>RL132_BRANA (P41129) 60S ribosomal protein L13-2 (Cold-induced protein C24B)| Length = 206 Score = 203 bits (516), Expect = 3e-52 Identities = 104/141 (73%), Positives = 115/141 (81%) Frame = -3 Query: 548 RPIVQCQTRKYNMKARAGRGFTLEELKSAGIPKKLAPTIGISVDHRRKNRSLEGMQSNIQ 369 RP+V QT KYNMK R G+GFTLEELK+AGIPKKLAPTIGIS+DHRRKNRSLEG+QSN+Q Sbjct: 54 RPVVHGQTLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGISLDHRRKNRSLEGLQSNVQ 113 Query: 368 RLKTYKAKLVIFPRRARKVKAGDSTPEELANATQVQGDYMPIARGEKRSXXXXXXXXXXX 189 RLKTYKAKLVIFPRRARKVKAGDST EELANATQVQGDYMPI R EK++ Sbjct: 114 RLKTYKAKLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVR-EKQAMELVKLTSEMK 172 Query: 188 XXKAYGKLRVERMNQRQLGAR 126 AY K+R+ER N+R GAR Sbjct: 173 SVNAYDKIRLERTNKRHAGAR 193
>RL131_BRANA (P41128) 60S ribosomal protein L13-1 (Cold-induced protein C24A)| Length = 206 Score = 202 bits (515), Expect = 4e-52 Identities = 105/141 (74%), Positives = 115/141 (81%) Frame = -3 Query: 548 RPIVQCQTRKYNMKARAGRGFTLEELKSAGIPKKLAPTIGISVDHRRKNRSLEGMQSNIQ 369 RP+V QT KYNMK R G+GFTLEELKSAGIPKKLAPTIGI+VDHRRKNRSLEG+QSN+Q Sbjct: 54 RPVVHGQTLKYNMKVRTGKGFTLEELKSAGIPKKLAPTIGIAVDHRRKNRSLEGLQSNVQ 113 Query: 368 RLKTYKAKLVIFPRRARKVKAGDSTPEELANATQVQGDYMPIARGEKRSXXXXXXXXXXX 189 RLKTYKAKLVIFPRRARKVKAGDST EELANATQVQGDYMPI R EK + Sbjct: 114 RLKTYKAKLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVR-EKHATELVKLTTEMK 172 Query: 188 XXKAYGKLRVERMNQRQLGAR 126 KA+ K+R+ER N+R GAR Sbjct: 173 SVKAFDKIRLERTNKRHAGAR 193
>RL13_ARATH (P41127) 60S ribosomal protein L13 (BBC1 protein homolog)| Length = 206 Score = 199 bits (507), Expect = 3e-51 Identities = 102/141 (72%), Positives = 115/141 (81%) Frame = -3 Query: 548 RPIVQCQTRKYNMKARAGRGFTLEELKSAGIPKKLAPTIGISVDHRRKNRSLEGMQSNIQ 369 RP+V QT KYNMK R G+GFTLEELK+AGIPKKLAPTIGI+VDHRRKNRSLEG+Q+N+Q Sbjct: 54 RPVVHGQTLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQ 113 Query: 368 RLKTYKAKLVIFPRRARKVKAGDSTPEELANATQVQGDYMPIARGEKRSXXXXXXXXXXX 189 RLKTYK KLVIFPRRARKVKAGDSTPEELANATQVQGDY+PI R EK + Sbjct: 114 RLKTYKTKLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVR-EKPTMELVKLTSEMK 172 Query: 188 XXKAYGKLRVERMNQRQLGAR 126 KA+ K+R+ER N+R GAR Sbjct: 173 SFKAFDKIRLERTNKRHAGAR 193
>RL13_TOBAC (P49627) 60S ribosomal protein L13 (Clone 6.2.1)| Length = 202 Score = 159 bits (402), Expect = 5e-39 Identities = 83/141 (58%), Positives = 99/141 (70%) Frame = -3 Query: 548 RPIVQCQTRKYNMKARAGRGFTLEELKSAGIPKKLAPTIGISVDHRRKNRSLEGMQSNIQ 369 RPIV QT KYNMK R+GRGF+LEELK+AGIPKKLAPTIGI+VDHRR+NRSLEG+Q+N+Q Sbjct: 50 RPIVHGQTLKYNMKVRSGRGFSLEELKAAGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQ 109 Query: 368 RLKTYKAKLVIFPRRARKVKAGDSTPEELANATQVQGDYMPIARGEKRSXXXXXXXXXXX 189 RL+ + +LV+FPRRA + + P ATQV G YMPI R EK Sbjct: 110 RLEDLQGQLVVFPRRASRSRLVILPPRNCLTATQVHGAYMPIER-EKHQLILSKVLKKMK 168 Query: 188 XXKAYGKLRVERMNQRQLGAR 126 AY KLRVER N+R +GAR Sbjct: 169 SFNAYAKLRVERTNERHIGAR 189
>RL13_CHLSW (O48513) 60S ribosomal protein L13 (BBC1 protein homolog)| Length = 208 Score = 155 bits (391), Expect = 9e-38 Identities = 77/142 (54%), Positives = 101/142 (71%) Frame = -3 Query: 548 RPIVQCQTRKYNMKARAGRGFTLEELKSAGIPKKLAPTIGISVDHRRKNRSLEGMQSNIQ 369 +PIV+CQT KYN K R GRGFTLEELK AGIP K APT+GI+VDHRRKNRSLE +Q+N+Q Sbjct: 55 KPIVRCQTVKYNTKQRLGRGFTLEELKEAGIPAKFAPTVGIAVDHRRKNRSLETLQANVQ 114 Query: 368 RLKTYKAKLVIFPRRARKVKAGDSTPEELANATQVQGDYMPIARGEKRSXXXXXXXXXXX 189 RLKTY+A LVIFPR +K KA +++ + + A+Q +G+ +P+ +G K + Sbjct: 115 RLKTYRASLVIFPRNMKKPKAFEASAADCSAASQAKGELLPL-KGTKPALELVKITADMK 173 Query: 188 XXKAYGKLRVERMNQRQLGARQ 123 YGKLR+ER+N R G R+ Sbjct: 174 EGSQYGKLRIERVNARLKGMRE 195
>RL13_BRARE (Q90Z10) 60S ribosomal protein L13| Length = 210 Score = 146 bits (368), Expect = 4e-35 Identities = 78/141 (55%), Positives = 96/141 (68%) Frame = -3 Query: 548 RPIVQCQTRKYNMKARAGRGFTLEELKSAGIPKKLAPTIGISVDHRRKNRSLEGMQSNIQ 369 RP+V+C T +Y+ K RAGRGFTLEELK+AGI KK+A TIGISVD RR+NRS E +Q+N+Q Sbjct: 55 RPVVRCPTIRYHTKVRAGRGFTLEELKAAGINKKVARTIGISVDSRRRNRSTESLQANVQ 114 Query: 368 RLKTYKAKLVIFPRRARKVKAGDSTPEELANATQVQGDYMPIARGEKRSXXXXXXXXXXX 189 RLK Y+ KL+IFPR+A K K GDST EEL ATQ+ G MPI + K+ Sbjct: 115 RLKEYRTKLIIFPRKAAKPKKGDSTEEELKMATQLTGPVMPIKKVHKKE-KARVISEDEK 173 Query: 188 XXKAYGKLRVERMNQRQLGAR 126 KA+ LR+ R N R G R Sbjct: 174 NFKAFASLRMARANARLFGIR 194
>RL13_CHICK (P41125) 60S ribosomal protein L13 (Breast basic conserved protein| 1) Length = 210 Score = 137 bits (345), Expect = 2e-32 Identities = 74/141 (52%), Positives = 93/141 (65%) Frame = -3 Query: 548 RPIVQCQTRKYNMKARAGRGFTLEELKSAGIPKKLAPTIGISVDHRRKNRSLEGMQSNIQ 369 RPIV+C T +Y+ K RAGRGF+LEELK AGI K+ A TIGISVD RR+N+S E +Q+N+Q Sbjct: 55 RPIVRCPTVRYHKKVRAGRGFSLEELKLAGINKRFARTIGISVDPRRRNKSTESLQANVQ 114 Query: 368 RLKTYKAKLVIFPRRARKVKAGDSTPEELANATQVQGDYMPIARGEKRSXXXXXXXXXXX 189 RLK Y++KL++FPR+ K GDS+PEEL ATQ+ G MPI KR Sbjct: 115 RLKEYRSKLILFPRKPSAPKKGDSSPEELKMATQLSGPVMPIRNVFKRE-KARVISEEEK 173 Query: 188 XXKAYGKLRVERMNQRQLGAR 126 KA+ LR+ R N R G R Sbjct: 174 NFKAFASLRMARANARLFGIR 194
>RL13_ICTPU (Q90YV5) 60S ribosomal protein L13| Length = 210 Score = 135 bits (341), Expect = 6e-32 Identities = 72/141 (51%), Positives = 91/141 (64%) Frame = -3 Query: 548 RPIVQCQTRKYNMKARAGRGFTLEELKSAGIPKKLAPTIGISVDHRRKNRSLEGMQSNIQ 369 RPIV+C T +YN K RAGRGFTLEELK+AGI K++A TIGI+VD RR+NRS E + N+Q Sbjct: 55 RPIVRCPTVRYNTKVRAGRGFTLEELKAAGINKRVARTIGIAVDPRRRNRSTESLHVNVQ 114 Query: 368 RLKTYKAKLVIFPRRARKVKAGDSTPEELANATQVQGDYMPIARGEKRSXXXXXXXXXXX 189 RLK Y++KL++FPR+ K GDST EE+ ATQ+ G MPI K+ Sbjct: 115 RLKVYRSKLILFPRKVSAPKKGDSTEEEVKMATQLTGPVMPIKIVHKKE-KARMITEEEK 173 Query: 188 XXKAYGKLRVERMNQRQLGAR 126 A+ LR+ R N R G R Sbjct: 174 KFNAFANLRMARANARLFGIR 194
>RL13_RAT (P41123) 60S ribosomal protein L13| Length = 210 Score = 134 bits (337), Expect = 2e-31 Identities = 72/141 (51%), Positives = 93/141 (65%) Frame = -3 Query: 548 RPIVQCQTRKYNMKARAGRGFTLEELKSAGIPKKLAPTIGISVDHRRKNRSLEGMQSNIQ 369 RPIV+C T +Y+ K RAGRGF+LEEL+ AGI KK+A TIGISVD RR+N+S E +Q+N+Q Sbjct: 55 RPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKMARTIGISVDPRRRNKSTESLQANVQ 114 Query: 368 RLKTYKAKLVIFPRRARKVKAGDSTPEELANATQVQGDYMPIARGEKRSXXXXXXXXXXX 189 RLK Y++KL++FPR+ K GDS+ EEL ATQ+ G MPI R + Sbjct: 115 RLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPI-RNVYKKEKARAITEEEK 173 Query: 188 XXKAYGKLRVERMNQRQLGAR 126 KA+ LR+ R N R G R Sbjct: 174 NFKAFASLRMARANARLFGIR 194
>RL13_MOUSE (P47963) 60S ribosomal protein L13 (A52)| Length = 210 Score = 133 bits (335), Expect = 3e-31 Identities = 72/141 (51%), Positives = 93/141 (65%) Frame = -3 Query: 548 RPIVQCQTRKYNMKARAGRGFTLEELKSAGIPKKLAPTIGISVDHRRKNRSLEGMQSNIQ 369 RPIV+C T +Y+ K RAGRGF+LEEL+ AGI KK+A TIGISVD RR+N+S E +Q+N+Q Sbjct: 55 RPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQ 114 Query: 368 RLKTYKAKLVIFPRRARKVKAGDSTPEELANATQVQGDYMPIARGEKRSXXXXXXXXXXX 189 RLK Y++KL++FPR+ K GDS+ EEL ATQ+ G MPI R + Sbjct: 115 RLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPI-RNVYKKEKARVITEEEK 173 Query: 188 XXKAYGKLRVERMNQRQLGAR 126 KA+ LR+ R N R G R Sbjct: 174 NFKAFASLRMARANARLFGIR 194
>RL13_HUMAN (P26373) 60S ribosomal protein L13 (Breast basic conserved protein| 1) Length = 210 Score = 133 bits (334), Expect = 4e-31 Identities = 71/141 (50%), Positives = 93/141 (65%) Frame = -3 Query: 548 RPIVQCQTRKYNMKARAGRGFTLEELKSAGIPKKLAPTIGISVDHRRKNRSLEGMQSNIQ 369 RPIV+C T +Y+ K RAGRGF+LEEL+ AGI KK+A TIGISVD RR+N+S E +Q+N+Q Sbjct: 55 RPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQ 114 Query: 368 RLKTYKAKLVIFPRRARKVKAGDSTPEELANATQVQGDYMPIARGEKRSXXXXXXXXXXX 189 RLK Y++KL++FPR+ K GDS+ EEL ATQ+ G MP+ R + Sbjct: 115 RLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPV-RNVYKKEKARVITEEEK 173 Query: 188 XXKAYGKLRVERMNQRQLGAR 126 KA+ LR+ R N R G R Sbjct: 174 NFKAFASLRMARANARLFGIR 194
>RL13_BOVIN (Q56JZ1) 60S ribosomal protein L13| Length = 210 Score = 131 bits (329), Expect = 1e-30 Identities = 70/141 (49%), Positives = 92/141 (65%) Frame = -3 Query: 548 RPIVQCQTRKYNMKARAGRGFTLEELKSAGIPKKLAPTIGISVDHRRKNRSLEGMQSNIQ 369 RP+V+C T +Y+ K RAGRGF+LEEL+ AGI KK+A TIGISVD RR+N+ E +Q+N+Q Sbjct: 55 RPVVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKCTESLQANVQ 114 Query: 368 RLKTYKAKLVIFPRRARKVKAGDSTPEELANATQVQGDYMPIARGEKRSXXXXXXXXXXX 189 RLK Y++KL++FPR+ K GDS+ EEL ATQ+ G MPI R + Sbjct: 115 RLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPI-RNVYKKEKARVITEEEK 173 Query: 188 XXKAYGKLRVERMNQRQLGAR 126 KA+ LR+ R N R G R Sbjct: 174 NFKAFASLRMARANARLFGIR 194
>RL13_CRIGR (Q9Z313) 60S ribosomal protein L13| Length = 210 Score = 130 bits (326), Expect = 3e-30 Identities = 71/141 (50%), Positives = 92/141 (65%) Frame = -3 Query: 548 RPIVQCQTRKYNMKARAGRGFTLEELKSAGIPKKLAPTIGISVDHRRKNRSLEGMQSNIQ 369 RPIV+C T +Y+ K RAGRGF+LEEL+ AGI KK+A TIGISVD RR+N+S E +Q+N+Q Sbjct: 55 RPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQ 114 Query: 368 RLKTYKAKLVIFPRRARKVKAGDSTPEELANATQVQGDYMPIARGEKRSXXXXXXXXXXX 189 RLK Y++KL++FPR+ K GDS+ EEL ATQ+ G M I R + Sbjct: 115 RLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMRI-RNVYKKEKARVITEEEK 173 Query: 188 XXKAYGKLRVERMNQRQLGAR 126 KA+ LR+ R N R G R Sbjct: 174 NFKAFASLRMARANARLFGIR 194
>RL13_DROME (P41126) 60S ribosomal protein L13 (BBC1 protein homolog)| Length = 218 Score = 129 bits (323), Expect = 7e-30 Identities = 68/141 (48%), Positives = 90/141 (63%) Frame = -3 Query: 548 RPIVQCQTRKYNMKARAGRGFTLEELKSAGIPKKLAPTIGISVDHRRKNRSLEGMQSNIQ 369 RP+V+C T +Y+ K RAGRGFTLEELK AGI A TIGI+VD RRKN+SLE Q NIQ Sbjct: 55 RPVVRCPTIRYHTKLRAGRGFTLEELKGAGIGANFAKTIGIAVDRRRKNKSLESRQRNIQ 114 Query: 368 RLKTYKAKLVIFPRRARKVKAGDSTPEELANATQVQGDYMPIARGEKRSXXXXXXXXXXX 189 RLK Y++KL++FP +K++AG+S+ EE ATQ++G +PI + Sbjct: 115 RLKEYRSKLILFPINEKKIRAGESSLEECKLATQLKGPVLPIKNEQPAVVEFREVTKDEK 174 Query: 188 XXKAYGKLRVERMNQRQLGAR 126 KA+ LR R + R +G R Sbjct: 175 KFKAFATLRKARTDARLVGIR 195
>RL13_SCHMA (Q95043) 60S ribosomal protein L13 (BBC1 protein homolog)| Length = 184 Score = 120 bits (302), Expect = 2e-27 Identities = 57/108 (52%), Positives = 80/108 (74%) Frame = -3 Query: 548 RPIVQCQTRKYNMKARAGRGFTLEELKSAGIPKKLAPTIGISVDHRRKNRSLEGMQSNIQ 369 RPIV C T +YNMK R+GRGF+L+E+++AG+ K A TIGI+VDHRR+N S+EG+Q N+ Sbjct: 55 RPIVNCPTFRYNMKVRSGRGFSLQEVRAAGLNPKFARTIGIAVDHRRRNVSVEGLQRNVA 114 Query: 368 RLKTYKAKLVIFPRRARKVKAGDSTPEELANATQVQGDYMPIARGEKR 225 RLK YKAKL++FP K +A D+ +E+ ATQ++ +PI + KR Sbjct: 115 RLKAYKAKLILFPLNPAKPQAMDAKADEVKKATQLRRPVLPITQRAKR 162
>RL13_LUMRU (O46157) 60S ribosomal protein L13| Length = 188 Score = 120 bits (300), Expect = 3e-27 Identities = 57/101 (56%), Positives = 78/101 (77%) Frame = -3 Query: 548 RPIVQCQTRKYNMKARAGRGFTLEELKSAGIPKKLAPTIGISVDHRRKNRSLEGMQSNIQ 369 RP V+CQT KYN + R GRGF+L+ELK+AGI KK A IGISVD RR+N+S+E +Q N+Q Sbjct: 32 RPQVRCQTFKYNTRLREGRGFSLDELKAAGINKKEARAIGISVDVRRRNKSVESLQLNVQ 91 Query: 368 RLKTYKAKLVIFPRRARKVKAGDSTPEELANATQVQGDYMP 246 RLK Y++KL++FP++ K GD+T EE+ ATQ++G +P Sbjct: 92 RLKEYRSKLILFPKKLSKPNKGDATEEEMKLATQLKGKLLP 132
>RL13_CAEEL (P91128) 60S ribosomal protein L13| Length = 207 Score = 116 bits (290), Expect = 5e-26 Identities = 54/103 (52%), Positives = 78/103 (75%) Frame = -3 Query: 548 RPIVQCQTRKYNMKARAGRGFTLEELKSAGIPKKLAPTIGISVDHRRKNRSLEGMQSNIQ 369 R +V+C ++YN K R GRGF+L+ELK+AGI + A TIGI+VD RR N++ EG+++N Sbjct: 56 RSVVRCPQKRYNTKTRLGRGFSLQELKAAGISQAQARTIGIAVDVRRTNKTAEGLKANAD 115 Query: 368 RLKTYKAKLVIFPRRARKVKAGDSTPEELANATQVQGDYMPIA 240 RLK YKAKL++FP++A K GDS+ EEL A Q++GD +P++ Sbjct: 116 RLKEYKAKLILFPKKASAPKKGDSSAEELKVAAQLRGDVLPLS 158
>RL13_SCHPO (O74175) 60S ribosomal protein L13| Length = 208 Score = 114 bits (284), Expect = 2e-25 Identities = 64/141 (45%), Positives = 85/141 (60%) Frame = -3 Query: 548 RPIVQCQTRKYNMKARAGRGFTLEELKSAGIPKKLAPTIGISVDHRRKNRSLEGMQSNIQ 369 RP V+ T +YNMK RAGRGFTLEELK+AG+ +++A TIGI VDHRR+NRS E +Q N++ Sbjct: 55 RPAVKPPTIRYNMKVRAGRGFTLEELKAAGVSRRVASTIGIPVDHRRRNRSEESLQRNVE 114 Query: 368 RLKTYKAKLVIFPRRARKVKAGDSTPEELANATQVQGDYMPIARGEKRSXXXXXXXXXXX 189 R+K Y A L++FPR+A + K GD+T A T V +PI ++ Sbjct: 115 RIKVYLAHLIVFPRKAGQPKKGDATDVSGAEQTDVAA-VLPIT--QEAVEEAKPITEEAK 171 Query: 188 XXKAYGKLRVERMNQRQLGAR 126 A+ L ER R GAR Sbjct: 172 NFNAFSTLSNERAYARYAGAR 192
>RL13_SPOFR (Q962U1) 60S ribosomal protein L13| Length = 219 Score = 112 bits (280), Expect = 7e-25 Identities = 61/141 (43%), Positives = 90/141 (63%) Frame = -3 Query: 548 RPIVQCQTRKYNMKARAGRGFTLEELKSAGIPKKLAPTIGISVDHRRKNRSLEGMQSNIQ 369 RP+V+C T +Y+ K RAGRGFTL E+++AG+ A TIGI+VD RR+N+S+E +Q N+Q Sbjct: 55 RPVVRCPTIRYHTKVRAGRGFTLREIRAAGLNPAFARTIGIAVDPRRRNKSVESLQVNVQ 114 Query: 368 RLKTYKAKLVIFPRRARKVKAGDSTPEELANATQVQGDYMPIARGEKRSXXXXXXXXXXX 189 RLK Y+A+L++FP + +KV G++ EE ATQ++G MP+ + +S Sbjct: 115 RLKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKS-IARAITEEEK 172 Query: 188 XXKAYGKLRVERMNQRQLGAR 126 KAY LR R + +G R Sbjct: 173 DFKAYQYLRGARSIAKLVGIR 193
>RL13_CANAL (O59931) 60S ribosomal protein L13| Length = 202 Score = 96.7 bits (239), Expect = 4e-20 Identities = 59/142 (41%), Positives = 79/142 (55%) Frame = -3 Query: 548 RPIVQCQTRKYNMKARAGRGFTLEELKSAGIPKKLAPTIGISVDHRRKNRSLEGMQSNIQ 369 RP+V+ T KYN K RAGRGFTL ELK+ GI K A TIGISVDHRR+N+S E +N+ Sbjct: 55 RPVVRAPTVKYNRKVRAGRGFTLAELKAVGIAPKYARTIGISVDHRRQNKSQETFDANVA 114 Query: 368 RLKTYKAKLVIFPRRARKVKAGDSTPEELANATQVQGDYMPIARGEKRSXXXXXXXXXXX 189 RL+ YK+KLVIF ++ + E+A+ QV D E+ + Sbjct: 115 RLQEYKSKLVIFDKKTK--------ASEVASFEQV--DVSATFPVEQPAPESGLRAVEVP 164 Query: 188 XXKAYGKLRVERMNQRQLGARQ 123 AY LR+ R ++ G R+ Sbjct: 165 EQTAYRTLRLARNEKKYKGIRE 186
>RL13A_YEAST (Q12690) 60S ribosomal protein L13-A| Length = 199 Score = 95.9 bits (237), Expect = 7e-20 Identities = 44/81 (54%), Positives = 61/81 (75%) Frame = -3 Query: 548 RPIVQCQTRKYNMKARAGRGFTLEELKSAGIPKKLAPTIGISVDHRRKNRSLEGMQSNIQ 369 RP+V+ T KYN K RAGRGFTL E+K+AG+ A TIGI+VDHRR+NR+ E +N+Q Sbjct: 55 RPVVRAPTVKYNRKVRAGRGFTLAEVKAAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQ 114 Query: 368 RLKTYKAKLVIFPRRARKVKA 306 RLK Y++K+++FPR + +A Sbjct: 115 RLKEYQSKIIVFPRNGKAPEA 135
>RL13B_YEAST (P40212) 60S ribosomal protein L13-B| Length = 199 Score = 95.1 bits (235), Expect = 1e-19 Identities = 44/81 (54%), Positives = 61/81 (75%) Frame = -3 Query: 548 RPIVQCQTRKYNMKARAGRGFTLEELKSAGIPKKLAPTIGISVDHRRKNRSLEGMQSNIQ 369 RP+V+ T KYN K RAGRGFTL E+K+AG+ A TIGI+VDHRR+NR+ E +N+Q Sbjct: 55 RPVVRAPTVKYNRKVRAGRGFTLAEVKAAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQ 114 Query: 368 RLKTYKAKLVIFPRRARKVKA 306 RLK Y++K+++FPR + +A Sbjct: 115 RLKEYQSKIIVFPRDGKAPEA 135
>RL13_SACEX (Q876B2) 60S ribosomal protein L13| Length = 199 Score = 94.0 bits (232), Expect = 3e-19 Identities = 55/142 (38%), Positives = 79/142 (55%) Frame = -3 Query: 548 RPIVQCQTRKYNMKARAGRGFTLEELKSAGIPKKLAPTIGISVDHRRKNRSLEGMQSNIQ 369 RP+V+ T KYN K RAGRGFT E+K+AG+ A TIGI+VDHRR+N++ E + N+Q Sbjct: 55 RPVVRAPTVKYNRKVRAGRGFTFGEVKAAGLTPAYARTIGIAVDHRRQNKNQEMFELNVQ 114 Query: 368 RLKTYKAKLVIFPRRARKVKAGDSTPEELANATQVQGDYMPIARGEKRSXXXXXXXXXXX 189 RLK Y++K+++FPR + T + L+ A PIA + + Sbjct: 115 RLKEYQSKIIVFPRNGKV----PETEQVLSTAAA-----FPIA---QPAVETETRAVQDN 162 Query: 188 XXKAYGKLRVERMNQRQLGARQ 123 AY LR+ R +R G R+ Sbjct: 163 GESAYRTLRMARSEKRYKGIRE 184
>RL13E_AERPE (Q9YEN9) 50S ribosomal protein L13e| Length = 80 Score = 38.9 bits (89), Expect = 0.010 Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 3/51 (5%) Frame = -3 Query: 503 RAGRGFTLEELKSAGIPKKLAPTIGISVDHRRKN---RSLEGMQSNIQRLK 360 R GRGF+L EL AG+ K A +G+ VD RR+ ++E ++ I+RL+ Sbjct: 24 RRGRGFSLGELAEAGLDAKKARKLGLHVDTRRRTVHPWNVEALKKYIERLR 74
>RL13E_SULSO (Q97W05) 50S ribosomal protein L13e| Length = 79 Score = 38.1 bits (87), Expect = 0.016 Identities = 24/61 (39%), Positives = 35/61 (57%) Frame = -3 Query: 524 RKYNMKARAGRGFTLEELKSAGIPKKLAPTIGISVDHRRKNRSLEGMQSNIQRLKTYKAK 345 RKY R GRGF++ EL+ AG+ A +GI VD RRK+ + N++ LK + + Sbjct: 21 RKYK---RIGRGFSVGELEKAGLNINKARKLGIFVDIRRKSVH----EENVETLKKFSEQ 73 Query: 344 L 342 L Sbjct: 74 L 74
>RL13E_SULTO (P58469) 50S ribosomal protein L13e| Length = 77 Score = 37.0 bits (84), Expect = 0.037 Identities = 24/69 (34%), Positives = 38/69 (55%) Frame = -3 Query: 548 RPIVQCQTRKYNMKARAGRGFTLEELKSAGIPKKLAPTIGISVDHRRKNRSLEGMQSNIQ 369 RP + + RK + K G+GF+L+ELK +G + A + + +D RRK E N++ Sbjct: 8 RPHYRFEIRKKDTKI--GKGFSLKELKESGFSVQEAKKLRVRIDKRRKTSYPE----NVE 61 Query: 368 RLKTYKAKL 342 LK K +L Sbjct: 62 VLKKLKEQL 70
>SEM5B_MOUSE (Q60519) Semaphorin-5B precursor (Semaphorin G) (Sema G)| Length = 1093 Score = 33.1 bits (74), Expect = 0.53 Identities = 15/26 (57%), Positives = 17/26 (65%) Frame = +2 Query: 341 QAWPCRS*ASGCWTAYPQATCSCGGG 418 QA P R A CWTA+ Q + SCGGG Sbjct: 847 QACPVRG-AWSCWTAWSQCSASCGGG 871
>TIE1_MOUSE (Q06806) Tyrosine-protein kinase receptor Tie-1 precursor (EC| 2.7.10.1) Length = 1134 Score = 31.6 bits (70), Expect = 1.5 Identities = 16/47 (34%), Positives = 21/47 (44%) Frame = +2 Query: 392 QATCSCGGGPQKCQWSVRASLGCQQT*APQG*SLCQPSPSCCTCGSG 532 + C G Q CQ + GC+ G + C P P C+CGSG Sbjct: 254 EQACREGRFGQSCQEQCPGTAGCR------GLTFCLPDPYGCSCGSG 294
>LRP_CAEEL (Q04833) Low-density lipoprotein receptor-related protein precursor| (LRP) Length = 4753 Score = 31.2 bits (69), Expect = 2.0 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 2/46 (4%) Frame = +2 Query: 401 CSCGGGPQKCQWSVRASLGCQQT*APQG*SLCQPSP--SCCTCGSG 532 C+ G Q+C ++ SLGCQ + C PSP CTC SG Sbjct: 288 CADGADEQQCSQNLCPSLGCQ--------AGCHPSPHGGECTCPSG 325
>TIE1_BOVIN (Q06805) Tyrosine-protein kinase receptor Tie-1 precursor (EC| 2.7.10.1) Length = 1136 Score = 31.2 bits (69), Expect = 2.0 Identities = 16/47 (34%), Positives = 21/47 (44%) Frame = +2 Query: 392 QATCSCGGGPQKCQWSVRASLGCQQT*APQG*SLCQPSPSCCTCGSG 532 + C G Q CQ + GC+ G + C P P C+CGSG Sbjct: 254 EQACREGRFGQSCQEQCPGTSGCR------GLTFCLPDPYGCSCGSG 294
>TIE1_HUMAN (P35590) Tyrosine-protein kinase receptor Tie-1 precursor (EC| 2.7.10.1) Length = 1138 Score = 30.0 bits (66), Expect = 4.5 Identities = 16/47 (34%), Positives = 20/47 (42%) Frame = +2 Query: 392 QATCSCGGGPQKCQWSVRASLGCQQT*APQG*SLCQPSPSCCTCGSG 532 + C G Q CQ GC+ G + C P P C+CGSG Sbjct: 256 EQACREGRFGQSCQEQCPGISGCR------GLTFCLPDPYGCSCGSG 296
>ATS16_HUMAN (Q8TE57) ADAMTS-16 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 16) (ADAM-TS 16) (ADAM-TS16) Length = 1224 Score = 29.6 bits (65), Expect = 5.9 Identities = 23/57 (40%), Positives = 25/57 (43%), Gaps = 6/57 (10%) Frame = +2 Query: 308 P*PCERALGR*QAWPCRS*ASGCWTAYP--QATCSCGGGPQ----KCQWSVRASLGC 460 P PC R A P R G W A P Q T SCGGG Q +C R + GC Sbjct: 1111 PLPCPRHPPFAAAGPSR----GSWFASPWSQCTASCGGGVQTRSVQCLAGGRPASGC 1163
>SEM5B_HUMAN (Q9P283) Semaphorin-5B precursor| Length = 1093 Score = 29.6 bits (65), Expect = 5.9 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = +2 Query: 341 QAWPCRS*ASGCWTAYPQATCSCGGG 418 QA P R A CWT++ + SCGGG Sbjct: 847 QACPVRG-AWSCWTSWSPCSASCGGG 871
>RPGR1_HUMAN (Q96KN7) X-linked retinitis pigmentosa GTPase regulator-interacting| protein 1 (RPGR-interacting protein 1) Length = 1286 Score = 29.6 bits (65), Expect = 5.9 Identities = 18/46 (39%), Positives = 21/46 (45%) Frame = -2 Query: 549 SPHRAMPDPQVQHEGEGWQRLHP*GAQVCWHPKEARTDHWHFCGPP 412 SP RA P QV H ++LH GA V PK D + PP Sbjct: 135 SPRRAQPRVQVGH-----RQLHTAGAPVPEKPKRGPRDRLSYTAPP 175
>AKR1_USTMA (Q4P6L3) Palmitoyltransferase AKR1 (EC 2.3.1.-) (Ankyrin| repeat-containing protein AKR1) Length = 844 Score = 29.3 bits (64), Expect = 7.7 Identities = 16/40 (40%), Positives = 19/40 (47%) Frame = -3 Query: 476 ELKSAGIPKKLAPTIGISVDHRRKNRSLEGMQSNIQRLKT 357 ELKS G +K IG+ D RRK R+ RL T Sbjct: 282 ELKSIGAYRKALADIGLEEDGRRKQRTFGASTDRTARLAT 321
>Y189_KLEPN (Q6U5S4) UPF0343 protein LV189| Length = 311 Score = 29.3 bits (64), Expect = 7.7 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 8/79 (10%) Frame = +3 Query: 333 EDNKLGLVGLEPLDVGLHTLKRPVLAAV---VHRNANGRCELLWDASRL-----ELLKGE 488 E L VG+E +D+ + RPV A V ++ ++ E SRL EL +GE Sbjct: 25 EGESLSWVGMEQIDLPIDIAGRPVSAKVNAGINLLSSPEAEKGIHMSRLYLLLDELTQGE 84 Query: 489 ASASPRLHVVLAGLALHDG 545 + + HV+ A L H G Sbjct: 85 ITPALLQHVLKAFLVSHQG 103
>EPHB4_HUMAN (P54760) Ephrin type-B receptor 4 precursor (EC 2.7.10.1)| (Tyrosine-protein kinase receptor HTK) Length = 987 Score = 28.9 bits (63), Expect = 10.0 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 1/54 (1%) Frame = +2 Query: 353 CRS*ASGCWTAYPQATCSCGGGPQKCQWSVRASLGCQQT*AP-QG*SLCQPSPS 511 CR G W P CSC G + + + + Q T P G CQP P+ Sbjct: 239 CRE--DGQWAEQPVTGCSCAPGFEAAEGNTKCRACAQGTFKPLSGEGSCQPCPA 290
>CET1_CRYNE (Q5KEQ1) mRNA capping enzyme beta subunit (EC 3.1.3.33)| (Polynucleotide 5'-triphosphatase) (mRNA 5'-triphosphatase) (TPase) Length = 397 Score = 28.9 bits (63), Expect = 10.0 Identities = 16/29 (55%), Positives = 18/29 (62%) Frame = -3 Query: 323 ARKVKAGDSTPEELANATQVQGDYMPIAR 237 AR A +S P E ANATQ GDY+P R Sbjct: 44 ARMSSAHESDPSEQANATQ-SGDYVPRQR 71
>PLXB1_HUMAN (O43157) Plexin-B1 precursor (Semaphorin receptor SEP)| Length = 2135 Score = 28.9 bits (63), Expect = 10.0 Identities = 11/25 (44%), Positives = 16/25 (64%) Frame = +2 Query: 392 QATCSCGGGPQKCQWSVRASLGCQQ 466 ++ CS G GP++ WS + LGC Q Sbjct: 511 RSECSRGQGPEQWLWSFQPELGCLQ 535
>WT1_RAT (P49952) Wilms' tumor protein homolog| Length = 448 Score = 28.9 bits (63), Expect = 10.0 Identities = 17/51 (33%), Positives = 20/51 (39%) Frame = -2 Query: 420 GPPPQEQVA*GYAVQHPEAQDLQGQACYLPKARSQGQGW*LYSGGACQRHT 268 GPPP Q + G A P A L P R+QG + G HT Sbjct: 112 GPPPPSQASSGQARMFPNAPYLPSCLESQPSIRNQGYSTVTFDGAPSYGHT 162 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,035,403 Number of Sequences: 219361 Number of extensions: 1370448 Number of successful extensions: 3801 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 3660 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3791 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4430660157 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
