ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags23d23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HEM1_CLOTE (Q897K9) Glutamyl-tRNA reductase (EC 1.2.1.70) (GluTR) 32 1.7
2IPNS_STRCL (P10621) Isopenicillin N synthetase (EC 1.21.3.1) (IP... 31 2.8
3GLYG3_SOYBN (P11828) Glycinin G3 precursor [Contains: Glycinin A... 31 3.7
4AMO1_ASPNG (Q12556) Copper amine oxidase 1 (EC 1.4.3.6) 30 4.9

>HEM1_CLOTE (Q897K9) Glutamyl-tRNA reductase (EC 1.2.1.70) (GluTR)|
          Length = 399

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 548 ILSRVFNCVRNEYYYYKAIIHYTSDENINH 637
           I+S +F C+  +  Y K   HY  DE INH
Sbjct: 62  IISHIFKCLNWDENYKKYTFHYKDDEAINH 91



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>IPNS_STRCL (P10621) Isopenicillin N synthetase (EC 1.21.3.1) (IPNS)|
           (Isopenicillin N synthase)
          Length = 329

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 145 DQSADDLMVHVHTSDG*SSDGYYYKSTDGRPQFLEACWMASNPPYGQ 285
           DQ   DL +H +  D       YYK+  GR      C++  NP +G+
Sbjct: 68  DQEKHDLAIHAYNPDNPHVRNGYYKAVPGRKAVESFCYL--NPDFGE 112



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>GLYG3_SOYBN (P11828) Glycinin G3 precursor [Contains: Glycinin A subunit;|
           Glycinin B subunit]
          Length = 481

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 283 GHMEGWRPSNMPQETAAVHRWIYSNIRHSISRPMYARAPSD 161
           G +E W P+N P + A V     +  R+++ RP Y  AP +
Sbjct: 50  GFIETWNPNNKPFQCAGVALSRCTLNRNALRRPSYTNAPQE 90



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>AMO1_ASPNG (Q12556) Copper amine oxidase 1 (EC 1.4.3.6)|
          Length = 671

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -1

Query: 320 LPNGHFQISVDSWPYGGLEAIQHASR 243
           LP G F++ ++ WPYGGL+ ++   R
Sbjct: 136 LPEG-FEVVIEPWPYGGLDYVEEKRR 160


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,340,694
Number of Sequences: 219361
Number of extensions: 2007682
Number of successful extensions: 4386
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4386
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6257125380
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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