ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags23d23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF474072.1| Hordeum vulgare sp. vulgare cultivar Morex BAC cl... 76 2e-10
2gb|AC008829.7| Homo sapiens chromosome 5 clone CTD-2140K22, comp... 46 0.15
3gb|AC154353.1| Mus musculus BAC clone RP24-547N14 from chromosom... 46 0.15
4gb|AC108818.11| Mus musculus chromosome 7, clone RP23-474B17, co... 46 0.15
5gb|AC125315.4| Mus musculus BAC clone RP24-370B21 from chromosom... 42 2.3
6gb|AC109605.14| Mus musculus strain 129S6/SvEvTac clone rp22-470... 42 2.3
7gb|CP000053.1| Rickettsia felis URRWXCal2, complete genome 42 2.3
8emb|AL365445.11| Human DNA sequence from clone RP4-796B4 on chro... 42 2.3
9gb|AC105280.3| Homo sapiens chromosome 1 clone RP5-1199C23, comp... 42 2.3
10emb|AL645802.11| Mouse DNA sequence from clone RP23-128D9 on chr... 42 2.3
11emb|CR391994.10| Zebrafish DNA sequence from clone DKEY-239B22, ... 42 2.3
12gb|AC084706.11| Homo sapiens chromosome , clone RP11-91P17, comp... 42 2.3
13gb|AC022828.10| Homo sapiens chromosome 8, clone RP11-119K24, co... 42 2.3
14gb|AF414119.2| Pineapple mealybug wilt-associated virus 1 methyl... 42 2.3
15emb|AL935172.8| Mouse DNA sequence from clone RP23-261J24 on chr... 42 2.3
16gb|AC003078.1| Homo sapiens BAC clone GS1-117O10 from 7, complet... 40 9.0
17ref|XM_740475.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 9.0
18ref|XM_728740.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 9.0
19ref|XM_662068.1| Cryptosporidium hominis TU502 asparaginyl-tRNA ... 40 9.0
20emb|AL139243.11| Human DNA sequence from clone RP11-439D8 on chr... 40 9.0
21emb|AL022400.8|HS809F4 Human DNA sequence from clone RP4-809F4 o... 40 9.0
22emb|AL022313.1|HS1119A7 Human DNA sequence from clone RP5-1119A7... 40 9.0
23emb|Y13183.1|HVSC488 Herpesvirus saimiri C-488 DNA for ORF 12 to 25 40 9.0
24emb|AJ410493.1|SHE410493 Saimiriine herpesvirus 2 complete L-DNA... 40 9.0
25emb|CR848664.5| Zebrafish DNA sequence from clone CH211-169I9 in... 40 9.0
26gb|AF509771.1| Hordeum vulgare subsp. vulgare isolate NRG048 Rpg... 40 9.0
27gb|AC010022.8| Drosophila melanogaster 3L BAC RP98-1E12 (Roswell... 40 9.0
28gb|AC091218.2| Drosophila melanogaster 3L BAC RP98-3E24 (Roswell... 40 9.0
29gb|AC113424.2| Homo sapiens chromosome 5 clone RP11-624C4, compl... 40 9.0
30gb|AC113412.2| Homo sapiens chromosome 5 clone RP11-509M23, comp... 40 9.0
31gb|AC009854.9| Homo sapiens chromosome 18, clone RP11-333A13, co... 40 9.0
32gb|AC100767.2| Homo sapiens chromosome 11, clone RP11-787P24, co... 40 9.0
33gb|AF450133.1|AF450133 Homo sapiens Hermansky-Pudlak syndrome (H... 40 9.0
34gb|AC008934.5| Homo sapiens chromosome 5 clone CITB-H1_2301A11, ... 40 9.0
35ref|XM_625497.1| Cryptosporidium parvum Iowa II asparaginyl-tRNA... 40 9.0
36gb|AC008852.5|AC008852 Homo sapiens chromosome 5 clone CTD-2176I... 40 9.0
37dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
38gb|AC067889.6|AC067889 Homo sapiens chromosome 17, clone CTD-200... 40 9.0
39gb|AY552027.1| Dictyocaulus viviparus isolate L3ni16 paramyosin ... 40 9.0
40gb|AF201372.1|AF201372 Homo sapiens HPS1-like pseudogene, partia... 40 9.0
41dbj|AP003332.4| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
42dbj|AP003546.4| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
43gb|AE003553.3| Drosophila melanogaster chromosome 3L, section 32... 40 9.0 
>gb|AF474072.1| Hordeum vulgare sp. vulgare cultivar Morex BAC clone 773k14, complete
              sequence
          Length = 113510

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 68/76 (89%), Gaps = 4/76 (5%)
 Strand = Plus / Minus

                                                                          
Query: 76     atacggacgttttcgcaacatgctctctgttgcaaaaga---aaaattactaacataatc 132
              |||||||| ||||||||||||||||| |||||||||| |   |||||| | |||||||||
Sbjct: 105413 atacggacattttcgcaacatgctctttgttgcaaaaaaaataaaattgc-aacataatc 105355

                              
Query: 133    tatgttgcaaaagatc 148
              ||||||||||||||||
Sbjct: 105354 tatgttgcaaaagatc 105339
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>gb|AC008829.7| Homo sapiens chromosome 5 clone CTD-2140K22, complete sequence
          Length = 159145

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 47    gaaaatattcagtaacaaatttt 69
             |||||||||||||||||||||||
Sbjct: 58715 gaaaatattcagtaacaaatttt 58693
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>gb|AC154353.1| Mus musculus BAC clone RP24-547N14 from chromosome 12, complete sequence
          Length = 249825

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 108    caaaagaaaaattactaacataa 130
              |||||||||||||||||||||||
Sbjct: 108236 caaaagaaaaattactaacataa 108214
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>gb|AC108818.11| Mus musculus chromosome 7, clone RP23-474B17, complete sequence
          Length = 180498

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 115    aaaattactaacataatctatgt 137
              |||||||||||||||||||||||
Sbjct: 118928 aaaattactaacataatctatgt 118906
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>gb|AC125315.4| Mus musculus BAC clone RP24-370B21 from chromosome 19, complete
             sequence
          Length = 155192

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 106   tgcaaaagaaaaattactaacataa 130
             ||||||||||||||| |||||||||
Sbjct: 32594 tgcaaaagaaaaattgctaacataa 32570
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>gb|AC109605.14| Mus musculus strain 129S6/SvEvTac clone rp22-470o15 map 11, complete
             sequence
          Length = 170397

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 46    agaaaatattcagtaacaaat 66
             |||||||||||||||||||||
Sbjct: 91929 agaaaatattcagtaacaaat 91949
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>gb|CP000053.1| Rickettsia felis URRWXCal2, complete genome
          Length = 1485148

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 48     aaaatattcagtaacaaattt 68
              |||||||||||||||||||||
Sbjct: 596393 aaaatattcagtaacaaattt 596373
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>emb|AL365445.11| Human DNA sequence from clone RP4-796B4 on chromosome 1p32.1-33 Contains
              a novel pseudogene (FLJ40434), the DMRTB1 gene for
              DMRT-like family B with proline-rich C-terminal, 1 and two
              CpG islands, complete sequence
          Length = 106438

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 48     aaaatattcagtaacaaattt 68
              |||||||||||||||||||||
Sbjct: 106340 aaaatattcagtaacaaattt 106320
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>gb|AC105280.3| Homo sapiens chromosome 1 clone RP5-1199C23, complete sequence
          Length = 70624

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 48   aaaatattcagtaacaaattt 68
            |||||||||||||||||||||
Sbjct: 1905 aaaatattcagtaacaaattt 1885
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>emb|AL645802.11| Mouse DNA sequence from clone RP23-128D9 on chromosome 11 Contains the
              gene for olfactory receptor MOR275-2,  an olfactory
              receptor (MOR275-3) pseudogene, the gene for olfactory
              receptor MOR275-5, a novel gene (2210407C18Rik), the gene
              olfactory receptor MOR107-1, a novel gene (LOC216781), a
              novel olfactory receptor protein, a novel gene similar to
              olfactory receptor MOR285-1 (LOC216783),  a novel gene
              similar to olfactory receptor MOR285-2 (LOC216784), a novel
              gene similar to olfactory receptor MOR285-1  (LOC194664),
              the gene for olfactory receptor MOR256-47 and a novel gene
              similar to olfactory receptor MOR285-1 (LOC193147),
              complete sequence
          Length = 226520

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 46     agaaaatattcagtaacaaat 66
              |||||||||||||||||||||
Sbjct: 151490 agaaaatattcagtaacaaat 151470
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>emb|CR391994.10| Zebrafish DNA sequence from clone DKEY-239B22, complete sequence
          Length = 157765

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 415   gccaagtaaatatttcaatta 435
             |||||||||||||||||||||
Sbjct: 37303 gccaagtaaatatttcaatta 37323
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>gb|AC084706.11| Homo sapiens chromosome , clone RP11-91P17, complete sequence
          Length = 146810

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 113   gaaaaattactaacataatct 133
             |||||||||||||||||||||
Sbjct: 35789 gaaaaattactaacataatct 35809
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>gb|AC022828.10| Homo sapiens chromosome 8, clone RP11-119K24, complete sequence
          Length = 137289

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 113   gaaaaattactaacataatct 133
             |||||||||||||||||||||
Sbjct: 50224 gaaaaattactaacataatct 50204
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>gb|AF414119.2| Pineapple mealybug wilt-associated virus 1 methyltransferase/helicase
            protein and RNA-dependent RNA polymerase (RdRp) genes,
            partial cds; and small hydrophobic protein, heat shock
            protein 70 (hsp70), p46, putative coat protein, and
            hypothetical protein genes, complete cds
          Length = 10736

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 550  tctttcccgagttttcaattg 570
            |||||||||||||||||||||
Sbjct: 5400 tctttcccgagttttcaattg 5380
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>emb|AL935172.8| Mouse DNA sequence from clone RP23-261J24 on chromosome 11, complete
             sequence
          Length = 142614

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 409   acatatgccaagtaaatattt 429
             |||||||||||||||||||||
Sbjct: 24350 acatatgccaagtaaatattt 24330
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>gb|AC003078.1| Homo sapiens BAC clone GS1-117O10 from 7, complete sequence
          Length = 182433

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 45    tagaaaatattcagtaacaaattttattgtaa 76
             |||||||||||||| || ||||| ||||||||
Sbjct: 92253 tagaaaatattcaggaaaaaattgtattgtaa 92222
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>ref|XM_740475.1| Plasmodium chabaudi chabaudi hypothetical protein (PC001353.02.0)
            partial mRNA
          Length = 3783

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 356  atcaaatgaaaaatgttcat 375
            ||||||||||||||||||||
Sbjct: 1664 atcaaatgaaaaatgttcat 1683
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>ref|XM_728740.1| Plasmodium chabaudi chabaudi hypothetical protein (PC401621.00.0)
           partial mRNA
          Length = 547

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 356 atcaaatgaaaaatgttcat 375
           ||||||||||||||||||||
Sbjct: 290 atcaaatgaaaaatgttcat 309
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>ref|XM_662068.1| Cryptosporidium hominis TU502 asparaginyl-tRNA synthetase
          (Chro.80047) partial mRNA
          Length = 1500

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 50 aatattcagtaacaaatttt 69
          ||||||||||||||||||||
Sbjct: 37 aatattcagtaacaaatttt 18
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>emb|AL139243.11| Human DNA sequence from clone RP11-439D8 on chromosome 10 Contains a
             novel gene, the HPS1 gene for Hermansky-Pudlak syndrome 1,
             the 3' end of the HPSE2 gene for heparanase 2 and a CpG
             island, complete sequence
          Length = 143463

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 266   ccaaccctccatatggccag 285
             ||||||||||||||||||||
Sbjct: 78608 ccaaccctccatatggccag 78627
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>emb|AL022400.8|HS809F4 Human DNA sequence from clone RP4-809F4 on chromosome 1q23.1-24.3
             Contains part of the gene for expressed in hematopoietic
             cells (heart, liver) (HLL), a novel pseudogene and a CpG
             island, complete sequence
          Length = 148335

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 100   ctctgttgcaaaagaaaaat 119
             ||||||||||||||||||||
Sbjct: 78763 ctctgttgcaaaagaaaaat 78782
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>emb|AL022313.1|HS1119A7 Human DNA sequence from clone RP5-1119A7 on chromosome 22q12.2-12.3,
             complete sequence
          Length = 127145

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 266   ccaaccctccatatggccag 285
             ||||||||||||||||||||
Sbjct: 88788 ccaaccctccatatggccag 88807
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>emb|Y13183.1|HVSC488 Herpesvirus saimiri C-488 DNA for ORF 12 to 25
          Length = 16552

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 108   caaaagaaaaattactaaca 127
             ||||||||||||||||||||
Sbjct: 11908 caaaagaaaaattactaaca 11927
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>emb|AJ410493.1|SHE410493 Saimiriine herpesvirus 2 complete L-DNA sequence, strain C488
          Length = 113027

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 108   caaaagaaaaattactaaca 127
             ||||||||||||||||||||
Sbjct: 37975 caaaagaaaaattactaaca 37994
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>emb|CR848664.5| Zebrafish DNA sequence from clone CH211-169I9 in linkage group 15,
             complete sequence
          Length = 139504

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 22    ttacaaaaatatctacatgtgttt 45
             ||||||||||||||| ||||||||
Sbjct: 36944 ttacaaaaatatctaaatgtgttt 36967
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>gb|AF509771.1| Hordeum vulgare subsp. vulgare isolate NRG048 Rpg1 region, genomic
            sequence
          Length = 6190

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 93   acatgctctctgttgcaaaa 112
            ||||||||||||||||||||
Sbjct: 5139 acatgctctctgttgcaaaa 5158
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>gb|AC010022.8| Drosophila melanogaster 3L BAC RP98-1E12 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 165852

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 618   ctgatgaaaacataaatcat 637
             ||||||||||||||||||||
Sbjct: 57397 ctgatgaaaacataaatcat 57378
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>gb|AC091218.2| Drosophila melanogaster 3L BAC RP98-3E24 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 179972

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 618    ctgatgaaaacataaatcat 637
              ||||||||||||||||||||
Sbjct: 175069 ctgatgaaaacataaatcat 175050
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>gb|AC113424.2| Homo sapiens chromosome 5 clone RP11-624C4, complete sequence
          Length = 194717

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 27    aaaatatctacatgtgttta 46
             ||||||||||||||||||||
Sbjct: 51389 aaaatatctacatgtgttta 51370
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>gb|AC113412.2| Homo sapiens chromosome 5 clone RP11-509M23, complete sequence
          Length = 169637

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 27     aaaatatctacatgtgttta 46
              ||||||||||||||||||||
Sbjct: 151704 aaaatatctacatgtgttta 151685
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>gb|AC009854.9| Homo sapiens chromosome 18, clone RP11-333A13, complete sequence
          Length = 207293

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 49     aaatattcagtaacaaattt 68
              ||||||||||||||||||||
Sbjct: 138319 aaatattcagtaacaaattt 138300
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>gb|AC100767.2| Homo sapiens chromosome 11, clone RP11-787P24, complete sequence
          Length = 170435

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 18    tatgttacaaaaatatctac 37
             ||||||||||||||||||||
Sbjct: 46543 tatgttacaaaaatatctac 46562
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>gb|AF450133.1|AF450133 Homo sapiens Hermansky-Pudlak syndrome (HPS) gene, complete cds
          Length = 31143

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 266   ccaaccctccatatggccag 285
             ||||||||||||||||||||
Sbjct: 13549 ccaaccctccatatggccag 13530
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>gb|AC008934.5| Homo sapiens chromosome 5 clone CITB-H1_2301A11, complete sequence
          Length = 135800

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 30    atatctacatgtgtttagaaaata 53
             |||| |||||||||||||||||||
Sbjct: 36818 atatgtacatgtgtttagaaaata 36795
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>ref|XM_625497.1| Cryptosporidium parvum Iowa II asparaginyl-tRNA synthetase
          (NOB+tRNA synthase) (cgd8_350), partial mRNA
          Length = 1500

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 50 aatattcagtaacaaatttt 69
          ||||||||||||||||||||
Sbjct: 37 aatattcagtaacaaatttt 18
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>gb|AC008852.5|AC008852 Homo sapiens chromosome 5 clone CTD-2176I21, complete sequence
          Length = 103952

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 356   atcaaatgaaaaatgttcat 375
             ||||||||||||||||||||
Sbjct: 32864 atcaaatgaaaaatgttcat 32845
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 273      tccatatggccagctatcca 292
                ||||||||||||||||||||
Sbjct: 22492834 tccatatggccagctatcca 22492815
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>gb|AC067889.6|AC067889 Homo sapiens chromosome 17, clone CTD-2009B14, complete sequence
          Length = 135356

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 101    tctgttgcaaaagaaaaatt 120
              ||||||||||||||||||||
Sbjct: 131827 tctgttgcaaaagaaaaatt 131846
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>gb|AY552027.1| Dictyocaulus viviparus isolate L3ni16 paramyosin mRNA, complete cds
          Length = 3215

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 133  tatgttgcaaaagatcagtcagct 156
            ||||||||||||||| ||||||||
Sbjct: 1094 tatgttgcaaaagattagtcagct 1117
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>gb|AF201372.1|AF201372 Homo sapiens HPS1-like pseudogene, partial sequence
          Length = 3208

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 266  ccaaccctccatatggccag 285
            ||||||||||||||||||||
Sbjct: 1976 ccaaccctccatatggccag 1995
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>dbj|AP003332.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:B1097D05
          Length = 144879

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 273  tccatatggccagctatcca 292
            ||||||||||||||||||||
Sbjct: 8571 tccatatggccagctatcca 8552
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>dbj|AP003546.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0672C09
          Length = 145655

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 273    tccatatggccagctatcca 292
              ||||||||||||||||||||
Sbjct: 116972 tccatatggccagctatcca 116953
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>gb|AE003553.3| Drosophila melanogaster chromosome 3L, section 32 of 83 of the complete
              sequence
          Length = 288102

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 618    ctgatgaaaacataaatcat 637
              ||||||||||||||||||||
Sbjct: 259910 ctgatgaaaacataaatcat 259891


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,712,547
Number of Sequences: 3902068
Number of extensions: 6712547
Number of successful extensions: 154610
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 154451
Number of HSP's gapped (non-prelim): 159
length of query: 656
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 633
effective length of database: 17,143,297,704
effective search space: 10851707446632
effective search space used: 10851707446632
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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