ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags22o22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK100679.1| Oryza sativa (japonica cultivar-group) cDNA clon... 196 6e-47
2dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 100 1e-17
3dbj|AP005579.3| Oryza sativa (japonica cultivar-group) genomic D... 100 1e-17
4dbj|AP005420.3| Oryza sativa (japonica cultivar-group) genomic D... 100 1e-17
5gb|AC140546.12| Medicago truncatula clone mth2-35l19, complete s... 48 0.036
6gb|AC012379.7|AC012379 Homo sapiens chromosome 15 clone RP11-485... 46 0.14
7emb|BX255946.6| Mouse DNA sequence from clone RP23-82A14 on chro... 44 0.56
8gb|AC138741.7| Mus musculus chromosome 1, clone RP24-260D21, com... 42 2.2
9gb|AC145760.3| Microcebus murinus clone CH257-514K9, complete se... 42 2.2
10emb|AL672118.8| Zebrafish DNA sequence from clone XX-113D7 Conta... 42 2.2
11emb|AL672145.5| Zebrafish DNA sequence from clone BUSM1-182H3 Co... 42 2.2
12gb|AC144859.3| Mus musculus BAC clone RP24-158C2 from chromosome... 42 2.2
13dbj|AK087124.1| Mus musculus 0 day neonate lung cDNA, RIKEN full... 42 2.2
14gb|AC154460.2| Mus musculus BAC clone RP24-163G22 from chromosom... 42 2.2
15gb|DP000022.1| Microcebus murinus target 1 genomic scaffold 42 2.2
16gb|AC152567.1| Ornithorhynchus anatinus chromosome UNK clone OAB... 40 8.7
17gb|AY137375.1| Bacillus subtilis bacillomycin D operon, complete... 40 8.7
18gb|AC161758.3| Mus musculus BAC clone RP23-455F6 from chromosome... 40 8.7
19gb|AY363103.1|AY363102S2 Mus musculus diadenosine triphosphate h... 40 8.7
20gb|AC121831.3| Mus musculus BAC clone RP24-66F17 from chromosome... 40 8.7
21gb|AC125179.4| Mus musculus BAC clone RP23-321N8 from chromosome... 40 8.7
22emb|AL512444.20| Human DNA sequence from clone RP11-69E9 on chro... 40 8.7
23emb|AL035705.22|HS758N20 Human DNA sequence from clone RP4-758N2... 40 8.7
24gb|AC154570.2| Mus musculus BAC clone RP23-385M5 from chromosome... 40 8.7
25emb|AJ576102.1|BAM576102 Bacillus amyloliquefaciens partial geno... 40 8.7
26emb|BX927175.11| Zebrafish DNA sequence from clone CH211-237C7 i... 40 8.7
27gb|AC154806.2| Mus musculus BAC clone RP23-78F6 from chromosome ... 40 8.7
28gb|AC161452.4| Mus musculus BAC clone RP23-411L11 from chromosom... 40 8.7
29gb|AC158513.2| Mus musculus BAC clone RP24-404N1 from chromosome... 40 8.7
30gb|AC154175.2| Ornithorhynchus anatinus chromosome UNK clone OAB... 40 8.7
31emb|AJ575417.1|BAM575417 Bacillus amyloliquefaciens kdg gene for... 40 8.7
32gb|AC083939.4| Homo sapiens BAC clone RP11-308C20 from 2, comple... 40 8.7
33gb|AC009117.8| Homo sapiens chromosome 16 clone RP11-481E4, comp... 40 8.7
34gb|AC008264.10|AC008264 Homo sapiens chromosome 7 clone RP11-180... 40 8.7
35emb|BX663494.4| Zebrafish DNA sequence from clone CH211-234N7 in... 40 8.7
36emb|BX927240.11| Zebrafish DNA sequence from clone DKEY-16N13 in... 40 8.7
37emb|CT486009.11| Mouse DNA sequence from clone RP24-160E3 on chr... 40 8.7
38emb|AL136000.4|CNS01DVQ Human chromosome 14 DNA sequence BAC R-8... 40 8.7
39gb|AC133500.3| Mus musculus BAC clone RP24-255M8 from 1, complet... 40 8.7
40gb|AC140256.3| Mus musculus BAC clone RP23-299A24 from 14, compl... 40 8.7
41dbj|AP004509.1| Lotus japonicus genomic DNA, chromosome 6, clone... 40 8.7
42emb|AL844495.6| Mouse DNA sequence from clone RP23-252L9 on chro... 40 8.7
43gb|AC101903.7| Mus musculus chromosome 1, clone RP24-227M18, com... 40 8.7 
>dbj|AK100679.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023113H15, full
            insert sequence
          Length = 2514

 Score =  196 bits (99), Expect = 6e-47
 Identities = 233/275 (84%), Gaps = 2/275 (0%)
 Strand = Plus / Minus

                                                                        
Query: 362  agatgtgtccgcaggctagactcctgtacctccagttctgcggccatagctaagagttct 421
            ||||| ||||||||||| |||||||||||||  |||| ||| ||||||||||| | ||||
Sbjct: 2080 agatgcgtccgcaggctggactcctgtacctgtagttttgctgccatagctaataattct 2021

                                                                        
Query: 422  ctgcattcgtcaagcatgaccttttcttgtgctgctacgactgaaagctccgagaccaaa 481
            |||||||| ||||||||| |||||||||||  |||||  |||||||| || || ||||||
Sbjct: 2020 ctgcattcatcaagcatggccttttcttgtcttgctataactgaaagttctgataccaaa 1961

                                                                        
Query: 482  tatgtcctgtcttcaaccttagaaagcatagaacaaactgacgatcccaaaccttgcatg 541
            ||||||||||| |||||||| | ||||||| | | ||| |  ||||||||||||||||||
Sbjct: 1960 tatgtcctgtcctcaacctttggaagcatacagcgaaccgctgatcccaaaccttgcatg 1901

                                                                        
Query: 542  acatcaacagctgagcttacagcattcttaagactaactgcatccacccttgctccctga 601
            | ||||||||| |||||||| ||||||||||||  |||| ||||  || ||||| |||||
Sbjct: 1900 atatcaacagcagagcttacggcattcttaagagcaactacatcagcctttgct-cctga 1842

                                               
Query: 602  cgtgactggaaggcgcagtgtactttgcttttaga 636
             || |||||||| |||| ||| | |||||||||||
Sbjct: 1841 tgtaactggaagacgcaatgtgc-ttgcttttaga 1808



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 123/150 (82%)
 Strand = Plus / Minus

                                                                        
Query: 150  tgagttgttatctgcacagcatcacaccttgatcggcaggggatgtttaatactcttccg 209
            |||||||||| |||||||||||||| || |||||  ||||||||||| ||   ||||  |
Sbjct: 2306 tgagttgttagctgcacagcatcactccatgatcaccaggggatgttcaacgttcttttg 2247

                                                                        
Query: 210  ttttgttatttcctctctacggattcctcgtctgtttgcacagtatgttcttatagtcac 269
             | | ||||||| |||||||  | |||| || |||||||||| ||||||| ||| | || 
Sbjct: 2246 gtctattatttcatctctacaaactccttgtatgtttgcacaatatgttcatatcgccag 2187

                                          
Query: 270  aggctcaacttgcacaggtgtacctattca 299
            ||||||||||||||| ||||||||| ||||
Sbjct: 2186 aggctcaacttgcactggtgtacctgttca 2157
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 92/106 (86%)
 Strand = Plus / Plus

                                                                            
Query: 395      agttctgcggccatagctaagagttctctgcattcgtcaagcatgaccttttcttgtgct 454
                |||| ||| ||||||||||| | |||||||||||| ||||||||| |||||||||||  |
Sbjct: 15232303 agttttgctgccatagctaataattctctgcattcatcaagcatggccttttcttgtctt 15232362

                                                              
Query: 455      gctacgactgaaagctccgagaccaaatatgtcctgtcttcaacct 500
                ||||  |||||||| || || ||||||||||||||||| |||||||
Sbjct: 15232363 gctataactgaaagttctgataccaaatatgtcctgtcctcaacct 15232408



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 123/150 (82%)
 Strand = Plus / Plus

                                                                            
Query: 150      tgagttgttatctgcacagcatcacaccttgatcggcaggggatgtttaatactcttccg 209
                |||||||||| |||||||||||||| || |||||  ||||||||||| ||   ||||  |
Sbjct: 15231885 tgagttgttagctgcacagcatcactccatgatcaccaggggatgttcaacgttcttttg 15231944

                                                                            
Query: 210      ttttgttatttcctctctacggattcctcgtctgtttgcacagtatgttcttatagtcac 269
                 | | ||||||| |||||||  | |||| || |||||||||| ||||||| ||| | || 
Sbjct: 15231945 gtctattatttcatctctacaaactccttgtatgtttgcacaatatgttcatatcgccag 15232004

                                              
Query: 270      aggctcaacttgcacaggtgtacctattca 299
                ||||||||||||||| ||||||||| ||||
Sbjct: 15232005 aggctcaacttgcactggtgtacctgttca 15232034



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 48/51 (94%)
 Strand = Plus / Plus

                                                                   
Query: 524      gatcccaaaccttgcatgacatcaacagctgagcttacagcattcttaaga 574
                ||||||||||||||||||| ||||||||| |||||||| ||||||||||||
Sbjct: 15233442 gatcccaaaccttgcatgatatcaacagcagagcttacggcattcttaaga 15233492



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                               
Query: 362      agatgtgtccgcaggctagactcctgtacct 392
                ||||| ||||||||||| |||||||||||||
Sbjct: 15232111 agatgcgtccgcaggctggactcctgtacct 15232141
to top
>dbj|AP005579.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1740_D06
          Length = 187410

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 92/106 (86%)
 Strand = Plus / Plus

                                                                          
Query: 395    agttctgcggccatagctaagagttctctgcattcgtcaagcatgaccttttcttgtgct 454
              |||| ||| ||||||||||| | |||||||||||| ||||||||| |||||||||||  |
Sbjct: 126279 agttttgctgccatagctaataattctctgcattcatcaagcatggccttttcttgtctt 126338

                                                            
Query: 455    gctacgactgaaagctccgagaccaaatatgtcctgtcttcaacct 500
              ||||  |||||||| || || ||||||||||||||||| |||||||
Sbjct: 126339 gctataactgaaagttctgataccaaatatgtcctgtcctcaacct 126384



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 123/150 (82%)
 Strand = Plus / Plus

                                                                          
Query: 150    tgagttgttatctgcacagcatcacaccttgatcggcaggggatgtttaatactcttccg 209
              |||||||||| |||||||||||||| || |||||  ||||||||||| ||   ||||  |
Sbjct: 125861 tgagttgttagctgcacagcatcactccatgatcaccaggggatgttcaacgttcttttg 125920

                                                                          
Query: 210    ttttgttatttcctctctacggattcctcgtctgtttgcacagtatgttcttatagtcac 269
               | | ||||||| |||||||  | |||| || |||||||||| ||||||| ||| | || 
Sbjct: 125921 gtctattatttcatctctacaaactccttgtatgtttgcacaatatgttcatatcgccag 125980

                                            
Query: 270    aggctcaacttgcacaggtgtacctattca 299
              ||||||||||||||| ||||||||| ||||
Sbjct: 125981 aggctcaacttgcactggtgtacctgttca 126010



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 48/51 (94%)
 Strand = Plus / Plus

                                                                 
Query: 524    gatcccaaaccttgcatgacatcaacagctgagcttacagcattcttaaga 574
              ||||||||||||||||||| ||||||||| |||||||| ||||||||||||
Sbjct: 127418 gatcccaaaccttgcatgatatcaacagcagagcttacggcattcttaaga 127468



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                             
Query: 362    agatgtgtccgcaggctagactcctgtacct 392
              ||||| ||||||||||| |||||||||||||
Sbjct: 126087 agatgcgtccgcaggctggactcctgtacct 126117
to top
>dbj|AP005420.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0418B08
          Length = 165909

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 92/106 (86%)
 Strand = Plus / Plus

                                                                         
Query: 395   agttctgcggccatagctaagagttctctgcattcgtcaagcatgaccttttcttgtgct 454
             |||| ||| ||||||||||| | |||||||||||| ||||||||| |||||||||||  |
Sbjct: 11492 agttttgctgccatagctaataattctctgcattcatcaagcatggccttttcttgtctt 11551

                                                           
Query: 455   gctacgactgaaagctccgagaccaaatatgtcctgtcttcaacct 500
             ||||  |||||||| || || ||||||||||||||||| |||||||
Sbjct: 11552 gctataactgaaagttctgataccaaatatgtcctgtcctcaacct 11597



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 123/150 (82%)
 Strand = Plus / Plus

                                                                         
Query: 150   tgagttgttatctgcacagcatcacaccttgatcggcaggggatgtttaatactcttccg 209
             |||||||||| |||||||||||||| || |||||  ||||||||||| ||   ||||  |
Sbjct: 11074 tgagttgttagctgcacagcatcactccatgatcaccaggggatgttcaacgttcttttg 11133

                                                                         
Query: 210   ttttgttatttcctctctacggattcctcgtctgtttgcacagtatgttcttatagtcac 269
              | | ||||||| |||||||  | |||| || |||||||||| ||||||| ||| | || 
Sbjct: 11134 gtctattatttcatctctacaaactccttgtatgtttgcacaatatgttcatatcgccag 11193

                                           
Query: 270   aggctcaacttgcacaggtgtacctattca 299
             ||||||||||||||| ||||||||| ||||
Sbjct: 11194 aggctcaacttgcactggtgtacctgttca 11223



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 48/51 (94%)
 Strand = Plus / Plus

                                                                
Query: 524   gatcccaaaccttgcatgacatcaacagctgagcttacagcattcttaaga 574
             ||||||||||||||||||| ||||||||| |||||||| ||||||||||||
Sbjct: 12631 gatcccaaaccttgcatgatatcaacagcagagcttacggcattcttaaga 12681



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 362   agatgtgtccgcaggctagactcctgtacct 392
             ||||| ||||||||||| |||||||||||||
Sbjct: 11300 agatgcgtccgcaggctggactcctgtacct 11330
to top
>gb|AC140546.12| Medicago truncatula clone mth2-35l19, complete sequence
          Length = 106962

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                             
Query: 524   gatcccaaaccttgcatgacatcaacagctga 555
             ||||||| | ||||||||||||||||||||||
Sbjct: 40326 gatcccatagcttgcatgacatcaacagctga 40357
to top
>gb|AC012379.7|AC012379 Homo sapiens chromosome 15 clone RP11-485O10 map 15q21.1, complete
             sequence
          Length = 174140

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 56    actaaaaggaggagggaaagagg 78
             |||||||||||||||||||||||
Sbjct: 97245 actaaaaggaggagggaaagagg 97267
to top
>emb|BX255946.6| Mouse DNA sequence from clone RP23-82A14 on chromosome 4, complete
             sequence
          Length = 116194

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 477   ccaaatatgtcctgtcttcaac 498
             ||||||||||||||||||||||
Sbjct: 31510 ccaaatatgtcctgtcttcaac 31531
to top
>gb|AC138741.7| Mus musculus chromosome 1, clone RP24-260D21, complete sequence
          Length = 161846

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 200    tactcttccgttttgttattt 220
              |||||||||||||||||||||
Sbjct: 125260 tactcttccgttttgttattt 125280
to top
>gb|AC145760.3| Microcebus murinus clone CH257-514K9, complete sequence
          Length = 271789

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 53     gaaactaaaaggaggagggaaagag 77
              ||||| |||||||||||||||||||
Sbjct: 171532 gaaaccaaaaggaggagggaaagag 171556
to top
>emb|AL672118.8| Zebrafish DNA sequence from clone XX-113D7 Contains the 3' part of
            the slc40a1 gene (solute carrier family 40
            (iron-regulated transporter), member 1), a novel gene and
            the 5' part of a novel gene similar to human STAT4
            (signal transducer and activator of transcription 4),
            complete sequence
          Length = 62827

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 460  gactgaaagctccgagaccaa 480
            |||||||||||||||||||||
Sbjct: 5010 gactgaaagctccgagaccaa 5030
to top
>emb|AL672145.5| Zebrafish DNA sequence from clone BUSM1-182H3 Contains the slc40a1 gene
             (solute carrier family 40 (iron-regulated transporter),
             member 1), a novel gene and the 5' part of a gene similar
             to STAT4 (signal transducer and activator of transcription
             4), complete sequence
          Length = 98868

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 460   gactgaaagctccgagaccaa 480
             |||||||||||||||||||||
Sbjct: 94630 gactgaaagctccgagaccaa 94610
to top
>gb|AC144859.3| Mus musculus BAC clone RP24-158C2 from chromosome 5, complete sequence
          Length = 170762

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 406    catagctaagagttctctgca 426
              |||||||||||||||||||||
Sbjct: 122160 catagctaagagttctctgca 122180
to top
>dbj|AK087124.1| Mus musculus 0 day neonate lung cDNA, RIKEN full-length enriched
            library, clone:E030028L23 product:unclassifiable, full
            insert sequence
          Length = 2948

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 200  tactcttccgttttgttattt 220
            |||||||||||||||||||||
Sbjct: 2490 tactcttccgttttgttattt 2510
to top
>gb|AC154460.2| Mus musculus BAC clone RP24-163G22 from chromosome 13, complete sequence
          Length = 197149

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 50     aaagaaactaaaaggaggagg 70
              |||||||||||||||||||||
Sbjct: 191596 aaagaaactaaaaggaggagg 191576
to top
>gb|DP000022.1| Microcebus murinus target 1 genomic scaffold
          Length = 1595145

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 53      gaaactaaaaggaggagggaaagag 77
               ||||| |||||||||||||||||||
Sbjct: 1045988 gaaaccaaaaggaggagggaaagag 1046012
to top
>gb|AC152567.1| Ornithorhynchus anatinus chromosome UNK clone OABb-43A15, complete
             sequence
          Length = 119966

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 58    taaaaggaggagggaaagag 77
             ||||||||||||||||||||
Sbjct: 87819 taaaaggaggagggaaagag 87800
to top
>gb|AY137375.1| Bacillus subtilis bacillomycin D operon, complete sequence; and
             flanking genes
          Length = 46513

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 54    aaactaaaaggaggagggaaagag 77
             |||| |||||||||||||||||||
Sbjct: 41406 aaacaaaaaggaggagggaaagag 41429
to top
>gb|AC161758.3| Mus musculus BAC clone RP23-455F6 from chromosome 14, complete sequence
          Length = 171133

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 192   atgtttaatactcttccgtt 211
             ||||||||||||||||||||
Sbjct: 89009 atgtttaatactcttccgtt 88990
to top
>gb|AY363103.1|AY363102S2 Mus musculus diadenosine triphosphate hydrolase (Fhit) gene, exons 6
              through 10 and partial cds
          Length = 688489

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 49     aaaagaaactaaaaggaggagggaaaga 76
              |||||||| |||||| ||||||||||||
Sbjct: 407749 aaaagaaaataaaagaaggagggaaaga 407776
to top
>gb|AC121831.3| Mus musculus BAC clone RP24-66F17 from chromosome 2, complete
            sequence
          Length = 190963

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 63   ggaggagggaaagaggctagaagt 86
            ||||||||||||| ||||||||||
Sbjct: 2141 ggaggagggaaaggggctagaagt 2164
to top
>gb|AC125179.4| Mus musculus BAC clone RP23-321N8 from chromosome 16, complete sequence
          Length = 193474

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 58    taaaaggaggagggaaagag 77
             ||||||||||||||||||||
Sbjct: 11218 taaaaggaggagggaaagag 11237
to top
>emb|AL512444.20| Human DNA sequence from clone RP11-69E9 on chromosome 1 Contains part
             of the EPHB2 gene for EphB2 and a novel gene, complete
             sequence
          Length = 126589

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 59    aaaaggaggagggaaagagg 78
             ||||||||||||||||||||
Sbjct: 13356 aaaaggaggagggaaagagg 13337
to top
>emb|AL035705.22|HS758N20 Human DNA sequence from clone RP4-758N20 on chromosome 1p31.3-32.2
             Contains the 3' end of the  PRKAA2 gene for protein kinase
             AMP-activated alpha 2 catalytic subunit, the 3' end of a
             novel gene, complete sequence
          Length = 129618

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 239   gtctgtttgcacagtatgtt 258
             ||||||||||||||||||||
Sbjct: 28744 gtctgtttgcacagtatgtt 28763
to top
>gb|AC154570.2| Mus musculus BAC clone RP23-385M5 from chromosome 14, complete sequence
          Length = 209218

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 49     aaaagaaactaaaaggaggagggaaaga 76
              |||||||| |||||| ||||||||||||
Sbjct: 101908 aaaagaaaataaaagaaggagggaaaga 101881
to top
>emb|AJ576102.1|BAM576102 Bacillus amyloliquefaciens partial genome, strain FZB42
          Length = 122883

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 54    aaactaaaaggaggagggaaagag 77
             |||| |||||||||||||||||||
Sbjct: 17904 aaacaaaaaggaggagggaaagag 17881
to top
>emb|BX927175.11| Zebrafish DNA sequence from clone CH211-237C7 in linkage group 18,
             complete sequence
          Length = 97314

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 285   aggtgtacctattcaagaag 304
             ||||||||||||||||||||
Sbjct: 19156 aggtgtacctattcaagaag 19175
to top
>gb|AC154806.2| Mus musculus BAC clone RP23-78F6 from chromosome 14, complete sequence
          Length = 218522

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 192   atgtttaatactcttccgtt 211
             ||||||||||||||||||||
Sbjct: 39118 atgtttaatactcttccgtt 39137
to top
>gb|AC161452.4| Mus musculus BAC clone RP23-411L11 from chromosome 16, complete sequence
          Length = 203922

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 58     taaaaggaggagggaaagag 77
              ||||||||||||||||||||
Sbjct: 195582 taaaaggaggagggaaagag 195601
to top
>gb|AC158513.2| Mus musculus BAC clone RP24-404N1 from chromosome 9, complete sequence
          Length = 156478

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 341   taattcatctggacttgcat 360
             ||||||||||||||||||||
Sbjct: 44456 taattcatctggacttgcat 44437
to top
>gb|AC154175.2| Ornithorhynchus anatinus chromosome UNK clone OABb-419P24, complete
             sequence
          Length = 163751

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 60    aaaggaggagggaaagaggc 79
             ||||||||||||||||||||
Sbjct: 38579 aaaggaggagggaaagaggc 38598
to top
>emb|AJ575417.1|BAM575417 Bacillus amyloliquefaciens kdg gene for KdgK protein
          Length = 122883

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 54    aaactaaaaggaggagggaaagag 77
             |||| |||||||||||||||||||
Sbjct: 17904 aaacaaaaaggaggagggaaagag 17881
to top
>gb|AC083939.4| Homo sapiens BAC clone RP11-308C20 from 2, complete sequence
          Length = 116121

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 564   cattcttaagactaactgca 583
             ||||||||||||||||||||
Sbjct: 42988 cattcttaagactaactgca 42969
to top
>gb|AC009117.8| Homo sapiens chromosome 16 clone RP11-481E4, complete sequence
          Length = 172868

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 579   ctgcatccacccttgctccc 598
             ||||||||||||||||||||
Sbjct: 53780 ctgcatccacccttgctccc 53799
to top
>gb|AC008264.10|AC008264 Homo sapiens chromosome 7 clone RP11-180C16, complete sequence
          Length = 162694

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 513   aacaaactgacgatcccaaa 532
             ||||||||||||||||||||
Sbjct: 34062 aacaaactgacgatcccaaa 34081
to top
>emb|BX663494.4| Zebrafish DNA sequence from clone CH211-234N7 in linkage group 18,
              complete sequence
          Length = 150365

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 285    aggtgtacctattcaagaag 304
              ||||||||||||||||||||
Sbjct: 145421 aggtgtacctattcaagaag 145402
to top
>emb|BX927240.11| Zebrafish DNA sequence from clone DKEY-16N13 in linkage group 18,
              complete sequence
          Length = 263615

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 285    aggtgtacctattcaagaag 304
              ||||||||||||||||||||
Sbjct: 240024 aggtgtacctattcaagaag 240005
to top
>emb|CT486009.11| Mouse DNA sequence from clone RP24-160E3 on chromosome 9, complete
             sequence
          Length = 193947

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 341   taattcatctggacttgcat 360
             ||||||||||||||||||||
Sbjct: 69085 taattcatctggacttgcat 69066
to top
>emb|AL136000.4|CNS01DVQ Human chromosome 14 DNA sequence BAC R-860P2 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 201587

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 62    aggaggagggaaagaggctagaagtgca 89
             |||||| |||||||||||||||| ||||
Sbjct: 81968 aggaggcgggaaagaggctagaaatgca 81941
to top
>gb|AC133500.3| Mus musculus BAC clone RP24-255M8 from 1, complete sequence
          Length = 133095

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 562    agcattcttaagactaactg 581
              ||||||||||||||||||||
Sbjct: 100860 agcattcttaagactaactg 100879
to top
>gb|AC140256.3| Mus musculus BAC clone RP23-299A24 from 14, complete sequence
          Length = 197168

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 192    atgtttaatactcttccgtt 211
              ||||||||||||||||||||
Sbjct: 147352 atgtttaatactcttccgtt 147371
to top
>dbj|AP004509.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT16K17, TM0037a,
             complete sequence
          Length = 84322

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 534   cttgcatgacatcaacagct 553
             ||||||||||||||||||||
Sbjct: 28515 cttgcatgacatcaacagct 28496
to top
>emb|AL844495.6| Mouse DNA sequence from clone RP23-252L9 on chromosome 2, complete
              sequence
          Length = 174818

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 63     ggaggagggaaagaggctagaagt 86
              ||||||||||||| ||||||||||
Sbjct: 121380 ggaggagggaaaggggctagaagt 121403
to top
>gb|AC101903.7| Mus musculus chromosome 1, clone RP24-227M18, complete sequence
          Length = 172143

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 562   agcattcttaagactaactg 581
             ||||||||||||||||||||
Sbjct: 17364 agcattcttaagactaactg 17383


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,163,921
Number of Sequences: 3902068
Number of extensions: 5163921
Number of successful extensions: 95313
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95163
Number of HSP's gapped (non-prelim): 149
length of query: 636
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 613
effective length of database: 17,143,297,704
effective search space: 10508841492552
effective search space used: 10508841492552
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top