ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags23d20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY103932.1| Zea mays PCO106241 mRNA sequence 174 2e-40
2ref|XM_464416.1| Oryza sativa (japonica cultivar-group), mRNA 161 3e-36
3dbj|AK069748.1| Oryza sativa (japonica cultivar-group) cDNA clon... 161 3e-36
4dbj|AK073428.1| Oryza sativa (japonica cultivar-group) cDNA clon... 155 2e-34
5dbj|AK101315.1| Oryza sativa (japonica cultivar-group) cDNA clon... 147 4e-32
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 88 3e-14
7dbj|AP005849.3| Oryza sativa (japonica cultivar-group) genomic D... 88 3e-14
8dbj|AP005785.3| Oryza sativa (japonica cultivar-group) genomic D... 88 3e-14
9dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
10dbj|AP004792.3| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
11emb|AL591136.20| Mouse DNA sequence from clone RP23-273P3 on chr... 42 1.7
12gb|AC011497.6| Homo sapiens chromosome 19 clone CTB-50E14, compl... 42 1.7
13gb|AC068561.2|AC068561 Mus musculus strain C57BL6/J chromosome 6... 42 1.7
14gb|AC158647.2| Mus musculus 6 BAC RP23-275N13 (Roswell Park Canc... 42 1.7
15ref|NM_189523.2| Oryza sativa (japonica cultivar-group), mRNA 40 6.7
16gb|AC121311.16| Mus musculus chromosome 3, clone RP24-317L5, com... 40 6.7
17gb|AC112949.9| Mus musculus chromosome 17, clone RP23-294D3, com... 40 6.7
18gb|AC123850.3| Mus musculus BAC clone RP23-319K22 from chromosom... 40 6.7
19gb|AC146172.2| Pan troglodytes BAC clone RP43-24M4 from 7, compl... 40 6.7
20gb|AC107792.10| Mus musculus chromosome 17, clone RP23-83F8, com... 40 6.7
21gb|AC127351.3| Mus musculus BAC clone RP23-66K20 from chromosome... 40 6.7
22emb|AJ245645.1|PWI245645 Prototheca wickerhamii chloroplast part... 40 6.7
23emb|CR702608.1|CNS0G530 Tetraodon nigroviridis full-length cDNA 40 6.7
24emb|CR692907.2|CNS0FXLJ Tetraodon nigroviridis full-length cDNA 40 6.7
25emb|CR689251.1|CNS0FURZ Tetraodon nigroviridis full-length cDNA 40 6.7
26gb|AC148154.15| Medicago truncatula clone mth2-17a6, complete se... 40 6.7
27emb|AL450306.14| Human DNA sequence from clone RP13-39P12 on chr... 40 6.7
28ref|XM_793013.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 6.7
29emb|CR382121.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 6.7
30emb|CR931802.8| Zebrafish DNA sequence from clone CH211-223A10 i... 40 6.7
31gb|AC007551.1| Homo sapiens clone RP11-239C9 from 7p14-15, compl... 40 6.7
32gb|AC024940.39| Homo sapiens 12 BAC RP11-627K11 (Roswell Park Ca... 40 6.7
33gb|AF352033.1| Homo sapiens DLG5 gene, exons 2 through 32 and co... 40 6.7
34gb|AC006432.15| Homo sapiens 12p13 PAC RPCI11-726G1 (Roswell Par... 40 6.7
35gb|AC093886.2| Homo sapiens BAC clone RP11-666L21 from 4, comple... 40 6.7
36gb|AC010746.8| Homo sapiens BAC clone RP11-550E21 from 2, comple... 40 6.7
37ref|NM_067115.2| Caenorhabditis elegans Y41C4A.9 (Y41C4A.9) mRNA... 40 6.7
38dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.7
39gb|AC092821.11| Homo sapiens 12 BAC RP11-525E9 (Roswell Park Can... 40 6.7
40gb|AC131945.1| Homo sapiens BAC clone RP11-5K24 from 4, complete... 40 6.7
41gb|AC133107.2| Homo sapiens BAC clone RP11-640O10 from 2, comple... 40 6.7
42gb|AC005297.1| Homo sapiens X BAC GS1-466O4 (Roswell Park Cancer... 40 6.7
43dbj|AP002903.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.7
44gb|AC012156.14|AC012156 Homo sapiens 12p11-37.2-54.4 BAC RP11-43... 40 6.7
45emb|BX682230.4| Mouse DNA sequence from clone RP23-236D21 on chr... 40 6.7
46dbj|AK120458.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.7
47dbj|AK067702.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.7
48gb|AC153593.4| Mus musculus 6 BAC RP23-131B11 (Roswell Park Canc... 40 6.7
49emb|CT025561.11| Mouse DNA sequence from clone RP23-308G10 on ch... 40 6.7
50emb|AL032627.2|CEY41C4A Caenorhabditis elegans YAC Y41C4A, compl... 40 6.7
51gb|U22525.1|KLU22525 Kluyveromyces lactis high affinity glucose ... 40 6.7
52emb|CT476826.2| Pan troglodytes chromosome X BAC RP43-034A07, co... 40 6.7

>gb|AY103932.1| Zea mays PCO106241 mRNA sequence
          Length = 1923

 Score =  174 bits (88), Expect = 2e-40
 Identities = 157/180 (87%)
 Strand = Plus / Minus

                                                                        
Query: 313  gaagatgctcatcgcatcactgtacagggccactgaattggagagcacagcaagcacaat 372
            ||||||| ||||||| |||||||| ||||| || ||||| || || ||||||||||| ||
Sbjct: 1514 gaagatgttcatcgcgtcactgtatagggcgacagaatttgacaggacagcaagcacgat 1455

                                                                        
Query: 373  catggttacagctaaaaccttatcgcgcttggttgcgatcccataagaatccctgagtat 432
            |||||||||||| | || ||| ||||||||| | ||||| || ||||||||||| |||||
Sbjct: 1454 catggttacagccagaatcttgtcgcgcttgctcgcgattccgtaagaatccctaagtat 1395

                                                                        
Query: 433  gatcatggcaggaaagatgaaaccaatcaggacagcagctgtagcaccagtgaactggaa 492
            || |||||||||||| || ||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 1394 gaccatggcaggaaatataaaaccaatcaggacagcagctgtggcaccagtaaactggaa 1335



to top

>ref|XM_464416.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1658

 Score =  161 bits (81), Expect = 3e-36
 Identities = 173/203 (85%), Gaps = 3/203 (1%)
 Strand = Plus / Minus

                                                                        
Query: 293  taggcctccaccttcctgt---agaagatgctcatcgcatcactgtacagggccactgaa 349
            ||||||||||| |||||||   ||| |||| |||  ||||| ||||| || ||||| |||
Sbjct: 1395 taggcctccactttcctgtgaaagatgatgttcagtgcatcgctgtatagagccacagaa 1336

                                                                        
Query: 350  ttggagagcacagcaagcacaatcatggttacagctaaaaccttatcgcgcttggttgcg 409
            || |||||||| |||||||||||||||||||  || |||| ||| |||||||||||||| 
Sbjct: 1335 tttgagagcaccgcaagcacaatcatggttaaggccaaaatcttgtcgcgcttggttgca 1276

                                                                        
Query: 410  atcccataagaatccctgagtatgatcatggcaggaaagatgaaaccaatcaggacagca 469
            || ||||||| ||| |||||||||||||||||||||||||| ||||| || || ||||||
Sbjct: 1275 attccataaggatctctgagtatgatcatggcaggaaagataaaaccgataagaacagca 1216

                                   
Query: 470  gctgtagcaccagtgaactggaa 492
            ||||| ||||| ||||| |||||
Sbjct: 1215 gctgtggcaccggtgaattggaa 1193



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                 
Query: 123  agacaaatgcagcaaacaaaatcctttcaagtgtccaaaacaaaaattaatgg 175
            ||||||||||||||||  ||||||||||| ||||||| || |||||| |||||
Sbjct: 1549 agacaaatgcagcaaatcaaatcctttcaggtgtccagaataaaaatcaatgg 1497



to top

>dbj|AK069748.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023027D15, full
            insert sequence
          Length = 1736

 Score =  161 bits (81), Expect = 3e-36
 Identities = 173/203 (85%), Gaps = 3/203 (1%)
 Strand = Plus / Minus

                                                                        
Query: 293  taggcctccaccttcctgt---agaagatgctcatcgcatcactgtacagggccactgaa 349
            ||||||||||| |||||||   ||| |||| |||  ||||| ||||| || ||||| |||
Sbjct: 1473 taggcctccactttcctgtgaaagatgatgttcagtgcatcgctgtatagagccacagaa 1414

                                                                        
Query: 350  ttggagagcacagcaagcacaatcatggttacagctaaaaccttatcgcgcttggttgcg 409
            || |||||||| |||||||||||||||||||  || |||| ||| |||||||||||||| 
Sbjct: 1413 tttgagagcaccgcaagcacaatcatggttaaggccaaaatcttgtcgcgcttggttgca 1354

                                                                        
Query: 410  atcccataagaatccctgagtatgatcatggcaggaaagatgaaaccaatcaggacagca 469
            || ||||||| ||| |||||||||||||||||||||||||| ||||| || || ||||||
Sbjct: 1353 attccataaggatctctgagtatgatcatggcaggaaagataaaaccgataagaacagca 1294

                                   
Query: 470  gctgtagcaccagtgaactggaa 492
            ||||| ||||| ||||| |||||
Sbjct: 1293 gctgtggcaccggtgaattggaa 1271



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                 
Query: 123  agacaaatgcagcaaacaaaatcctttcaagtgtccaaaacaaaaattaatgg 175
            ||||||||||||||||  ||||||||||| ||||||| || |||||| |||||
Sbjct: 1627 agacaaatgcagcaaatcaaatcctttcaggtgtccagaataaaaatcaatgg 1575



to top

>dbj|AK073428.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033042H02, full
            insert sequence
          Length = 1885

 Score =  155 bits (78), Expect = 2e-34
 Identities = 129/146 (88%)
 Strand = Plus / Minus

                                                                        
Query: 347  gaattggagagcacagcaagcacaatcatggttacagctaaaaccttatcgcgcttggtt 406
            ||||||||||| ||||||||||| |||||||||||||| || | ||| || ||||||| |
Sbjct: 1436 gaattggagaggacagcaagcacgatcatggttacagccaagatcttgtcacgcttggat 1377

                                                                        
Query: 407  gcgatcccataagaatccctgagtatgatcatggcaggaaagatgaaaccaatcaggaca 466
            ||||| ||||||| |||||| ||||| | ||||||||| |||||||||||||||||||||
Sbjct: 1376 gcgattccataaggatccctaagtataaccatggcagggaagatgaaaccaatcaggaca 1317

                                      
Query: 467  gcagctgtagcaccagtgaactggaa 492
            ||||| || |||||||| ||||||||
Sbjct: 1316 gcagcagttgcaccagtaaactggaa 1291



to top

>dbj|AK101315.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034C14, full
            insert sequence
          Length = 1956

 Score =  147 bits (74), Expect = 4e-32
 Identities = 128/146 (87%)
 Strand = Plus / Minus

                                                                        
Query: 347  gaattggagagcacagcaagcacaatcatggttacagctaaaaccttatcgcgcttggtt 406
            ||||||||||| ||||||||||| |||| ||||||||| || | ||| || ||||||| |
Sbjct: 1557 gaattggagaggacagcaagcacgatcacggttacagccaagatcttgtcacgcttggat 1498

                                                                        
Query: 407  gcgatcccataagaatccctgagtatgatcatggcaggaaagatgaaaccaatcaggaca 466
            ||||| ||||||| |||||| ||||| | ||||||||| |||||||||||||||||||||
Sbjct: 1497 gcgattccataaggatccctaagtataaccatggcagggaagatgaaaccaatcaggaca 1438

                                      
Query: 467  gcagctgtagcaccagtgaactggaa 492
            ||||| || |||||||| ||||||||
Sbjct: 1437 gcagcagttgcaccagtaaactggaa 1412



to top

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 109/130 (83%), Gaps = 3/130 (2%)
 Strand = Plus / Plus

                                                                           
Query: 293     taggcctccaccttcctgt---agaagatgctcatcgcatcactgtacagggccactgaa 349
               ||||||||||| |||||||   ||| |||| |||  ||||| ||||| || ||||| |||
Sbjct: 5059083 taggcctccactttcctgtgaaagatgatgttcagtgcatcgctgtatagagccacagaa 5059142

                                                                           
Query: 350     ttggagagcacagcaagcacaatcatggttacagctaaaaccttatcgcgcttggttgcg 409
               || |||||||| |||||||||||||||||||  || |||| ||| |||||||||||||| 
Sbjct: 5059143 tttgagagcaccgcaagcacaatcatggttaaggccaaaatcttgtcgcgcttggttgca 5059202

                         
Query: 410     atcccataag 419
               || |||||||
Sbjct: 5059203 attccataag 5059212



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 62/69 (89%)
 Strand = Plus / Plus

                                                                           
Query: 424     cctgagtatgatcatggcaggaaagatgaaaccaatcaggacagcagctgtagcaccagt 483
               ||||||||||||||||||||||||||| ||||| || || ||||||||||| ||||| ||
Sbjct: 5059317 cctgagtatgatcatggcaggaaagataaaaccgataagaacagcagctgtggcaccggt 5059376

                        
Query: 484     gaactggaa 492
               ||| |||||
Sbjct: 5059377 gaattggaa 5059385



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                    
Query: 123     agacaaatgcagcaaacaaaatcctttcaagtgtccaaaacaaaaattaatgg 175
               ||||||||||||||||  ||||||||||| ||||||| || |||||| |||||
Sbjct: 5058929 agacaaatgcagcaaatcaaatcctttcaggtgtccagaataaaaatcaatgg 5058981



to top

>dbj|AP005849.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBb0031B09
          Length = 132729

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 109/130 (83%), Gaps = 3/130 (2%)
 Strand = Plus / Plus

                                                                          
Query: 293    taggcctccaccttcctgt---agaagatgctcatcgcatcactgtacagggccactgaa 349
              ||||||||||| |||||||   ||| |||| |||  ||||| ||||| || ||||| |||
Sbjct: 130209 taggcctccactttcctgtgaaagatgatgttcagtgcatcgctgtatagagccacagaa 130268

                                                                          
Query: 350    ttggagagcacagcaagcacaatcatggttacagctaaaaccttatcgcgcttggttgcg 409
              || |||||||| |||||||||||||||||||  || |||| ||| |||||||||||||| 
Sbjct: 130269 tttgagagcaccgcaagcacaatcatggttaaggccaaaatcttgtcgcgcttggttgca 130328

                        
Query: 410    atcccataag 419
              || |||||||
Sbjct: 130329 attccataag 130338



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 62/69 (89%)
 Strand = Plus / Plus

                                                                          
Query: 424    cctgagtatgatcatggcaggaaagatgaaaccaatcaggacagcagctgtagcaccagt 483
              ||||||||||||||||||||||||||| ||||| || || ||||||||||| ||||| ||
Sbjct: 130443 cctgagtatgatcatggcaggaaagataaaaccgataagaacagcagctgtggcaccggt 130502

                       
Query: 484    gaactggaa 492
              ||| |||||
Sbjct: 130503 gaattggaa 130511



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                   
Query: 123    agacaaatgcagcaaacaaaatcctttcaagtgtccaaaacaaaaattaatgg 175
              ||||||||||||||||  ||||||||||| ||||||| || |||||| |||||
Sbjct: 130055 agacaaatgcagcaaatcaaatcctttcaggtgtccagaataaaaatcaatgg 130107



to top

>dbj|AP005785.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0453H10
          Length = 133464

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 109/130 (83%), Gaps = 3/130 (2%)
 Strand = Plus / Plus

                                                                         
Query: 293   taggcctccaccttcctgt---agaagatgctcatcgcatcactgtacagggccactgaa 349
             ||||||||||| |||||||   ||| |||| |||  ||||| ||||| || ||||| |||
Sbjct: 19581 taggcctccactttcctgtgaaagatgatgttcagtgcatcgctgtatagagccacagaa 19640

                                                                         
Query: 350   ttggagagcacagcaagcacaatcatggttacagctaaaaccttatcgcgcttggttgcg 409
             || |||||||| |||||||||||||||||||  || |||| ||| |||||||||||||| 
Sbjct: 19641 tttgagagcaccgcaagcacaatcatggttaaggccaaaatcttgtcgcgcttggttgca 19700

                       
Query: 410   atcccataag 419
             || |||||||
Sbjct: 19701 attccataag 19710



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 62/69 (89%)
 Strand = Plus / Plus

                                                                         
Query: 424   cctgagtatgatcatggcaggaaagatgaaaccaatcaggacagcagctgtagcaccagt 483
             ||||||||||||||||||||||||||| ||||| || || ||||||||||| ||||| ||
Sbjct: 19815 cctgagtatgatcatggcaggaaagataaaaccgataagaacagcagctgtggcaccggt 19874

                      
Query: 484   gaactggaa 492
             ||| |||||
Sbjct: 19875 gaattggaa 19883



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                  
Query: 123   agacaaatgcagcaaacaaaatcctttcaagtgtccaaaacaaaaattaatgg 175
             ||||||||||||||||  ||||||||||| ||||||| || |||||| |||||
Sbjct: 19427 agacaaatgcagcaaatcaaatcctttcaggtgtccagaataaaaatcaatgg 19479



to top

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 53/57 (92%)
 Strand = Plus / Minus

                                                                         
Query: 436      catggcaggaaagatgaaaccaatcaggacagcagctgtagcaccagtgaactggaa 492
                ||||||||| |||||||||||||||||||||||||| || |||||||| ||||||||
Sbjct: 25309510 catggcagggaagatgaaaccaatcaggacagcagcagttgcaccagtaaactggaa 25309454



 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 70/80 (87%)
 Strand = Plus / Minus

                                                                            
Query: 347      gaattggagagcacagcaagcacaatcatggttacagctaaaaccttatcgcgcttggtt 406
                ||||||||||| ||||||||||| |||||||||||||| || | ||| || ||||||| |
Sbjct: 25309691 gaattggagaggacagcaagcacgatcatggttacagccaagatcttgtcacgcttggat 25309632

                                    
Query: 407      gcgatcccataagaatccct 426
                ||||| ||||||| ||||||
Sbjct: 25309631 gcgattccataaggatccct 25309612



to top

>dbj|AP004792.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0505A04
          Length = 159241

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 53/57 (92%)
 Strand = Plus / Minus

                                                                       
Query: 436    catggcaggaaagatgaaaccaatcaggacagcagctgtagcaccagtgaactggaa 492
              ||||||||| |||||||||||||||||||||||||| || |||||||| ||||||||
Sbjct: 128118 catggcagggaagatgaaaccaatcaggacagcagcagttgcaccagtaaactggaa 128062



 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 70/80 (87%)
 Strand = Plus / Minus

                                                                          
Query: 347    gaattggagagcacagcaagcacaatcatggttacagctaaaaccttatcgcgcttggtt 406
              ||||||||||| ||||||||||| |||||||||||||| || | ||| || ||||||| |
Sbjct: 128299 gaattggagaggacagcaagcacgatcatggttacagccaagatcttgtcacgcttggat 128240

                                  
Query: 407    gcgatcccataagaatccct 426
              ||||| ||||||| ||||||
Sbjct: 128239 gcgattccataaggatccct 128220



to top

>emb|AL591136.20| Mouse DNA sequence from clone RP23-273P3 on chromosome 11 Contains the 5'
              end of a novel gene, two novel genes, the Taok1 gene for
              TAO kinase 1, a eukaryotic translation initiation factor 2
              subunit 1 alpha (Eif2s1) pseudogene, a ribosomal protein S2
              (Rps2) pseudogene, the Cryba1 gene for crystallin beta A1
              and two CpG islands, complete sequence
          Length = 220230

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 28/29 (96%), Gaps = 1/29 (3%)
 Strand = Plus / Minus

                                           
Query: 122    aagacaaatgcagcaaacaaaatcctttc 150
              |||||||| ||||||||||||||||||||
Sbjct: 120383 aagacaaa-gcagcaaacaaaatcctttc 120356



to top

>gb|AC011497.6| Homo sapiens chromosome 19 clone CTB-50E14, complete sequence
          Length = 168586

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 339    gggccactgaattggagagcacagc 363
              |||||| ||||||||||||||||||
Sbjct: 134105 gggccagtgaattggagagcacagc 134081



to top

>gb|AC068561.2|AC068561 Mus musculus strain C57BL6/J chromosome 6 clone RP23-86H7, complete
             sequence
          Length = 230839

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 434   atcatggcaggaaagatgaaa 454
             |||||||||||||||||||||
Sbjct: 77435 atcatggcaggaaagatgaaa 77415



to top

>gb|AC158647.2| Mus musculus 6 BAC RP23-275N13 (Roswell Park Cancer Institute
            (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 208007

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 434  atcatggcaggaaagatgaaa 454
            |||||||||||||||||||||
Sbjct: 3973 atcatggcaggaaagatgaaa 3953



to top

>ref|NM_189523.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1733

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 456  caatcaggacagcagctgta 475
            ||||||||||||||||||||
Sbjct: 1671 caatcaggacagcagctgta 1690



to top

>gb|AC121311.16| Mus musculus chromosome 3, clone RP24-317L5, complete sequence
          Length = 221261

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 228    aatcattccgaattgtgcat 247
              ||||||||||||||||||||
Sbjct: 121333 aatcattccgaattgtgcat 121352



to top

>gb|AC112949.9| Mus musculus chromosome 17, clone RP23-294D3, complete sequence
          Length = 169739

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 458   atcaggacagcagctgtagc 477
             ||||||||||||||||||||
Sbjct: 12208 atcaggacagcagctgtagc 12227



to top

>gb|AC123850.3| Mus musculus BAC clone RP23-319K22 from chromosome 5, complete sequence
          Length = 200934

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 150   caagtgtccaaaacaaaaat 169
             ||||||||||||||||||||
Sbjct: 43913 caagtgtccaaaacaaaaat 43932



to top

>gb|AC146172.2| Pan troglodytes BAC clone RP43-24M4 from 7, complete sequence
          Length = 223283

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 22     tacataacccccaaaagaat 41
              ||||||||||||||||||||
Sbjct: 185544 tacataacccccaaaagaat 185525



to top

>gb|AC107792.10| Mus musculus chromosome 17, clone RP23-83F8, complete sequence
          Length = 253013

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 458   atcaggacagcagctgtagc 477
             ||||||||||||||||||||
Sbjct: 12971 atcaggacagcagctgtagc 12952



to top

>gb|AC127351.3| Mus musculus BAC clone RP23-66K20 from chromosome 5, complete sequence
          Length = 238781

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 150    caagtgtccaaaacaaaaat 169
              ||||||||||||||||||||
Sbjct: 126748 caagtgtccaaaacaaaaat 126767



to top

>emb|AJ245645.1|PWI245645 Prototheca wickerhamii chloroplast partial genome
          Length = 22085

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    ataacccccaaaagaataaa 44
             ||||||||||||||||||||
Sbjct: 12296 ataacccccaaaagaataaa 12277



to top

>emb|CR702608.1|CNS0G530 Tetraodon nigroviridis full-length cDNA
          Length = 1212

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 463 gacagcagctgtagcaccag 482
           ||||||||||||||||||||
Sbjct: 830 gacagcagctgtagcaccag 849



to top

>emb|CR692907.2|CNS0FXLJ Tetraodon nigroviridis full-length cDNA
          Length = 1247

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 463 gacagcagctgtagcaccag 482
           ||||||||||||||||||||
Sbjct: 831 gacagcagctgtagcaccag 850



to top

>emb|CR689251.1|CNS0FURZ Tetraodon nigroviridis full-length cDNA
          Length = 1250

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 463 gacagcagctgtagcaccag 482
           ||||||||||||||||||||
Sbjct: 836 gacagcagctgtagcaccag 855



to top

>gb|AC148154.15| Medicago truncatula clone mth2-17a6, complete sequence
          Length = 138465

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 370    aatcatggttacagctaaaa 389
              ||||||||||||||||||||
Sbjct: 102143 aatcatggttacagctaaaa 102162



to top

>emb|AL450306.14| Human DNA sequence from clone RP13-39P12 on chromosome 10 Contains a
             IMP (inosine monophosphate) dehydrogenase 2 (IMPDH2)
             pseudogene, a novel gene and  the 3' end of the DLG5 gene
             for discs large (Drosophila) homolog 5 (DLG5) (P-dlg,
             KIAA0583), complete sequence
          Length = 48537

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    taacccccaaaagaataaaa 45
             ||||||||||||||||||||
Sbjct: 43751 taacccccaaaagaataaaa 43770



to top

>ref|XM_793013.1| PREDICTED: Strongylocentrotus purpuratus similar to likely ortholog
            of mouse ubiquitin-conjugating enzyme E2-230K
            (LOC593542), mRNA
          Length = 4176

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 269  ggagtatggaggcatggagc 288
            ||||||||||||||||||||
Sbjct: 4086 ggagtatggaggcatggagc 4067



to top

>emb|CR382121.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome A of strain NRRL
              Y-1140 of Kluyveromyces lactis
          Length = 1062590

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 311    tagaagatgctcatcgcatc 330
              ||||||||||||||||||||
Sbjct: 963607 tagaagatgctcatcgcatc 963626



to top

>emb|CR931802.8| Zebrafish DNA sequence from clone CH211-223A10 in linkage group 13,
             complete sequence
          Length = 136909

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 150   caagtgtccaaaacaaaaat 169
             ||||||||||||||||||||
Sbjct: 68212 caagtgtccaaaacaaaaat 68231



to top

>gb|AC007551.1| Homo sapiens clone RP11-239C9 from 7p14-15, complete sequence
          Length = 155401

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    tacataacccccaaaagaat 41
             ||||||||||||||||||||
Sbjct: 48227 tacataacccccaaaagaat 48246



to top

>gb|AC024940.39| Homo sapiens 12 BAC RP11-627K11 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 205952

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 340    ggccactgaattggagagca 359
              ||||||||||||||||||||
Sbjct: 153697 ggccactgaattggagagca 153716



to top

>gb|AF352033.1| Homo sapiens DLG5 gene, exons 2 through 32 and complete cds
          Length = 82500

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 26    taacccccaaaagaataaaa 45
             ||||||||||||||||||||
Sbjct: 69982 taacccccaaaagaataaaa 69963



to top

>gb|AC006432.15| Homo sapiens 12p13 PAC RPCI11-726G1 (Roswell Park Cancer Institute Human
              PAC Library) complete sequence
          Length = 180685

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 340    ggccactgaattggagagca 359
              ||||||||||||||||||||
Sbjct: 117804 ggccactgaattggagagca 117785



to top

>gb|AC093886.2| Homo sapiens BAC clone RP11-666L21 from 4, complete sequence
          Length = 174332

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 223   tcaataatcattccgaattgtgca 246
             |||||||||| |||||||||||||
Sbjct: 32066 tcaataatcagtccgaattgtgca 32089



to top

>gb|AC010746.8| Homo sapiens BAC clone RP11-550E21 from 2, complete sequence
          Length = 229379

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 154   tgtccaaaacaaaaattaat 173
             ||||||||||||||||||||
Sbjct: 58662 tgtccaaaacaaaaattaat 58681



to top

>ref|NM_067115.2| Caenorhabditis elegans Y41C4A.9 (Y41C4A.9) mRNA, complete cds
          Length = 1874

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 38  gaataaaaatctcgttcttggcaataaa 65
           ||||||||||||| || |||||||||||
Sbjct: 456 gaataaaaatctcattattggcaataaa 483



to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 456     caatcaggacagcagctgta 475
               ||||||||||||||||||||
Sbjct: 4050947 caatcaggacagcagctgta 4050928



to top

>gb|AC092821.11| Homo sapiens 12 BAC RP11-525E9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 121181

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 340   ggccactgaattggagagca 359
             ||||||||||||||||||||
Sbjct: 75849 ggccactgaattggagagca 75868



to top

>gb|AC131945.1| Homo sapiens BAC clone RP11-5K24 from 4, complete sequence
          Length = 135190

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 223   tcaataatcattccgaattgtgca 246
             |||||||||| |||||||||||||
Sbjct: 93838 tcaataatcagtccgaattgtgca 93861



to top

>gb|AC133107.2| Homo sapiens BAC clone RP11-640O10 from 2, complete sequence
          Length = 120939

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 26    taacccccaaaagaataaaa 45
             ||||||||||||||||||||
Sbjct: 15491 taacccccaaaagaataaaa 15472



to top

>gb|AC005297.1| Homo sapiens X BAC GS1-466O4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 177503

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 12    tatgaacatgtacataacccccaaaaga 39
             ||||||||||| ||| ||||||||||||
Sbjct: 43956 tatgaacatgttcatcacccccaaaaga 43929



to top

>dbj|AP002903.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0509B06
          Length = 104515

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 456   caatcaggacagcagctgta 475
             ||||||||||||||||||||
Sbjct: 17690 caatcaggacagcagctgta 17671



to top

>gb|AC012156.14|AC012156 Homo sapiens 12p11-37.2-54.4 BAC RP11-433D24 (Rosewell Park Cancer
             Institute Human Bac Library) complete sequence
          Length = 162200

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 340   ggccactgaattggagagca 359
             ||||||||||||||||||||
Sbjct: 35644 ggccactgaattggagagca 35625



to top

>emb|BX682230.4| Mouse DNA sequence from clone RP23-236D21 on chromosome X, complete
             sequence
          Length = 61120

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 157   ccaaaacaaaaattaatgga 176
             ||||||||||||||||||||
Sbjct: 39660 ccaaaacaaaaattaatgga 39641



to top

>dbj|AK120458.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013105O22, full
            insert sequence
          Length = 2063

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 456  caatcaggacagcagctgta 475
            ||||||||||||||||||||
Sbjct: 2014 caatcaggacagcagctgta 2033



to top

>dbj|AK067702.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013119N03, full
            insert sequence
          Length = 1734

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 456  caatcaggacagcagctgta 475
            ||||||||||||||||||||
Sbjct: 1672 caatcaggacagcagctgta 1691



to top

>gb|AC153593.4| Mus musculus 6 BAC RP23-131B11 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 205164

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 27     aacccccaaaagaataaaaatctc 50
              |||||||||| |||||||||||||
Sbjct: 118517 aacccccaaacgaataaaaatctc 118540



to top

>emb|CT025561.11| Mouse DNA sequence from clone RP23-308G10 on chromosome 9, complete
              sequence
          Length = 224154

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 22     tacataacccccaaaagaat 41
              ||||||||||||||||||||
Sbjct: 111628 tacataacccccaaaagaat 111647



to top

>emb|AL032627.2|CEY41C4A Caenorhabditis elegans YAC Y41C4A, complete sequence
          Length = 129061

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 38    gaataaaaatctcgttcttggcaataaa 65
             ||||||||||||| || |||||||||||
Sbjct: 80184 gaataaaaatctcattattggcaataaa 80157



to top

>gb|U22525.1|KLU22525 Kluyveromyces lactis high affinity glucose transporter (HGT1) gene,
           complete cds
          Length = 2425

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 311 tagaagatgctcatcgcatc 330
           ||||||||||||||||||||
Sbjct: 62  tagaagatgctcatcgcatc 81



to top

>emb|CT476826.2| Pan troglodytes chromosome X BAC RP43-034A07, complete sequence, whole
             genome shotgun sequence
          Length = 151456

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 12    tatgaacatgtacataacccccaaaaga 39
             ||||||||||| ||| ||||||||||||
Sbjct: 52156 tatgaacatgttcatcacccccaaaaga 52183


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,584,581
Number of Sequences: 3902068
Number of extensions: 5584581
Number of successful extensions: 110567
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 110342
Number of HSP's gapped (non-prelim): 220
length of query: 493
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 471
effective length of database: 17,147,199,772
effective search space: 8076331092612
effective search space used: 8076331092612
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top