| Clone Name | rbags23d20 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY103932.1| Zea mays PCO106241 mRNA sequence Length = 1923 Score = 174 bits (88), Expect = 2e-40 Identities = 157/180 (87%) Strand = Plus / Minus Query: 313 gaagatgctcatcgcatcactgtacagggccactgaattggagagcacagcaagcacaat 372 ||||||| ||||||| |||||||| ||||| || ||||| || || ||||||||||| || Sbjct: 1514 gaagatgttcatcgcgtcactgtatagggcgacagaatttgacaggacagcaagcacgat 1455 Query: 373 catggttacagctaaaaccttatcgcgcttggttgcgatcccataagaatccctgagtat 432 |||||||||||| | || ||| ||||||||| | ||||| || ||||||||||| ||||| Sbjct: 1454 catggttacagccagaatcttgtcgcgcttgctcgcgattccgtaagaatccctaagtat 1395 Query: 433 gatcatggcaggaaagatgaaaccaatcaggacagcagctgtagcaccagtgaactggaa 492 || |||||||||||| || ||||||||||||||||||||||| |||||||| |||||||| Sbjct: 1394 gaccatggcaggaaatataaaaccaatcaggacagcagctgtggcaccagtaaactggaa 1335
>ref|XM_464416.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1658 Score = 161 bits (81), Expect = 3e-36 Identities = 173/203 (85%), Gaps = 3/203 (1%) Strand = Plus / Minus Query: 293 taggcctccaccttcctgt---agaagatgctcatcgcatcactgtacagggccactgaa 349 ||||||||||| ||||||| ||| |||| ||| ||||| ||||| || ||||| ||| Sbjct: 1395 taggcctccactttcctgtgaaagatgatgttcagtgcatcgctgtatagagccacagaa 1336 Query: 350 ttggagagcacagcaagcacaatcatggttacagctaaaaccttatcgcgcttggttgcg 409 || |||||||| ||||||||||||||||||| || |||| ||| |||||||||||||| Sbjct: 1335 tttgagagcaccgcaagcacaatcatggttaaggccaaaatcttgtcgcgcttggttgca 1276 Query: 410 atcccataagaatccctgagtatgatcatggcaggaaagatgaaaccaatcaggacagca 469 || ||||||| ||| |||||||||||||||||||||||||| ||||| || || |||||| Sbjct: 1275 attccataaggatctctgagtatgatcatggcaggaaagataaaaccgataagaacagca 1216 Query: 470 gctgtagcaccagtgaactggaa 492 ||||| ||||| ||||| ||||| Sbjct: 1215 gctgtggcaccggtgaattggaa 1193 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 123 agacaaatgcagcaaacaaaatcctttcaagtgtccaaaacaaaaattaatgg 175 |||||||||||||||| ||||||||||| ||||||| || |||||| ||||| Sbjct: 1549 agacaaatgcagcaaatcaaatcctttcaggtgtccagaataaaaatcaatgg 1497
>dbj|AK069748.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023027D15, full insert sequence Length = 1736 Score = 161 bits (81), Expect = 3e-36 Identities = 173/203 (85%), Gaps = 3/203 (1%) Strand = Plus / Minus Query: 293 taggcctccaccttcctgt---agaagatgctcatcgcatcactgtacagggccactgaa 349 ||||||||||| ||||||| ||| |||| ||| ||||| ||||| || ||||| ||| Sbjct: 1473 taggcctccactttcctgtgaaagatgatgttcagtgcatcgctgtatagagccacagaa 1414 Query: 350 ttggagagcacagcaagcacaatcatggttacagctaaaaccttatcgcgcttggttgcg 409 || |||||||| ||||||||||||||||||| || |||| ||| |||||||||||||| Sbjct: 1413 tttgagagcaccgcaagcacaatcatggttaaggccaaaatcttgtcgcgcttggttgca 1354 Query: 410 atcccataagaatccctgagtatgatcatggcaggaaagatgaaaccaatcaggacagca 469 || ||||||| ||| |||||||||||||||||||||||||| ||||| || || |||||| Sbjct: 1353 attccataaggatctctgagtatgatcatggcaggaaagataaaaccgataagaacagca 1294 Query: 470 gctgtagcaccagtgaactggaa 492 ||||| ||||| ||||| ||||| Sbjct: 1293 gctgtggcaccggtgaattggaa 1271 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 123 agacaaatgcagcaaacaaaatcctttcaagtgtccaaaacaaaaattaatgg 175 |||||||||||||||| ||||||||||| ||||||| || |||||| ||||| Sbjct: 1627 agacaaatgcagcaaatcaaatcctttcaggtgtccagaataaaaatcaatgg 1575
>dbj|AK073428.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033042H02, full insert sequence Length = 1885 Score = 155 bits (78), Expect = 2e-34 Identities = 129/146 (88%) Strand = Plus / Minus Query: 347 gaattggagagcacagcaagcacaatcatggttacagctaaaaccttatcgcgcttggtt 406 ||||||||||| ||||||||||| |||||||||||||| || | ||| || ||||||| | Sbjct: 1436 gaattggagaggacagcaagcacgatcatggttacagccaagatcttgtcacgcttggat 1377 Query: 407 gcgatcccataagaatccctgagtatgatcatggcaggaaagatgaaaccaatcaggaca 466 ||||| ||||||| |||||| ||||| | ||||||||| ||||||||||||||||||||| Sbjct: 1376 gcgattccataaggatccctaagtataaccatggcagggaagatgaaaccaatcaggaca 1317 Query: 467 gcagctgtagcaccagtgaactggaa 492 ||||| || |||||||| |||||||| Sbjct: 1316 gcagcagttgcaccagtaaactggaa 1291
>dbj|AK101315.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034C14, full insert sequence Length = 1956 Score = 147 bits (74), Expect = 4e-32 Identities = 128/146 (87%) Strand = Plus / Minus Query: 347 gaattggagagcacagcaagcacaatcatggttacagctaaaaccttatcgcgcttggtt 406 ||||||||||| ||||||||||| |||| ||||||||| || | ||| || ||||||| | Sbjct: 1557 gaattggagaggacagcaagcacgatcacggttacagccaagatcttgtcacgcttggat 1498 Query: 407 gcgatcccataagaatccctgagtatgatcatggcaggaaagatgaaaccaatcaggaca 466 ||||| ||||||| |||||| ||||| | ||||||||| ||||||||||||||||||||| Sbjct: 1497 gcgattccataaggatccctaagtataaccatggcagggaagatgaaaccaatcaggaca 1438 Query: 467 gcagctgtagcaccagtgaactggaa 492 ||||| || |||||||| |||||||| Sbjct: 1437 gcagcagttgcaccagtaaactggaa 1412
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 87.7 bits (44), Expect = 3e-14 Identities = 109/130 (83%), Gaps = 3/130 (2%) Strand = Plus / Plus Query: 293 taggcctccaccttcctgt---agaagatgctcatcgcatcactgtacagggccactgaa 349 ||||||||||| ||||||| ||| |||| ||| ||||| ||||| || ||||| ||| Sbjct: 5059083 taggcctccactttcctgtgaaagatgatgttcagtgcatcgctgtatagagccacagaa 5059142 Query: 350 ttggagagcacagcaagcacaatcatggttacagctaaaaccttatcgcgcttggttgcg 409 || |||||||| ||||||||||||||||||| || |||| ||| |||||||||||||| Sbjct: 5059143 tttgagagcaccgcaagcacaatcatggttaaggccaaaatcttgtcgcgcttggttgca 5059202 Query: 410 atcccataag 419 || ||||||| Sbjct: 5059203 attccataag 5059212 Score = 81.8 bits (41), Expect = 2e-12 Identities = 62/69 (89%) Strand = Plus / Plus Query: 424 cctgagtatgatcatggcaggaaagatgaaaccaatcaggacagcagctgtagcaccagt 483 ||||||||||||||||||||||||||| ||||| || || ||||||||||| ||||| || Sbjct: 5059317 cctgagtatgatcatggcaggaaagataaaaccgataagaacagcagctgtggcaccggt 5059376 Query: 484 gaactggaa 492 ||| ||||| Sbjct: 5059377 gaattggaa 5059385 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 123 agacaaatgcagcaaacaaaatcctttcaagtgtccaaaacaaaaattaatgg 175 |||||||||||||||| ||||||||||| ||||||| || |||||| ||||| Sbjct: 5058929 agacaaatgcagcaaatcaaatcctttcaggtgtccagaataaaaatcaatgg 5058981
>dbj|AP005849.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0031B09 Length = 132729 Score = 87.7 bits (44), Expect = 3e-14 Identities = 109/130 (83%), Gaps = 3/130 (2%) Strand = Plus / Plus Query: 293 taggcctccaccttcctgt---agaagatgctcatcgcatcactgtacagggccactgaa 349 ||||||||||| ||||||| ||| |||| ||| ||||| ||||| || ||||| ||| Sbjct: 130209 taggcctccactttcctgtgaaagatgatgttcagtgcatcgctgtatagagccacagaa 130268 Query: 350 ttggagagcacagcaagcacaatcatggttacagctaaaaccttatcgcgcttggttgcg 409 || |||||||| ||||||||||||||||||| || |||| ||| |||||||||||||| Sbjct: 130269 tttgagagcaccgcaagcacaatcatggttaaggccaaaatcttgtcgcgcttggttgca 130328 Query: 410 atcccataag 419 || ||||||| Sbjct: 130329 attccataag 130338 Score = 81.8 bits (41), Expect = 2e-12 Identities = 62/69 (89%) Strand = Plus / Plus Query: 424 cctgagtatgatcatggcaggaaagatgaaaccaatcaggacagcagctgtagcaccagt 483 ||||||||||||||||||||||||||| ||||| || || ||||||||||| ||||| || Sbjct: 130443 cctgagtatgatcatggcaggaaagataaaaccgataagaacagcagctgtggcaccggt 130502 Query: 484 gaactggaa 492 ||| ||||| Sbjct: 130503 gaattggaa 130511 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 123 agacaaatgcagcaaacaaaatcctttcaagtgtccaaaacaaaaattaatgg 175 |||||||||||||||| ||||||||||| ||||||| || |||||| ||||| Sbjct: 130055 agacaaatgcagcaaatcaaatcctttcaggtgtccagaataaaaatcaatgg 130107
>dbj|AP005785.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0453H10 Length = 133464 Score = 87.7 bits (44), Expect = 3e-14 Identities = 109/130 (83%), Gaps = 3/130 (2%) Strand = Plus / Plus Query: 293 taggcctccaccttcctgt---agaagatgctcatcgcatcactgtacagggccactgaa 349 ||||||||||| ||||||| ||| |||| ||| ||||| ||||| || ||||| ||| Sbjct: 19581 taggcctccactttcctgtgaaagatgatgttcagtgcatcgctgtatagagccacagaa 19640 Query: 350 ttggagagcacagcaagcacaatcatggttacagctaaaaccttatcgcgcttggttgcg 409 || |||||||| ||||||||||||||||||| || |||| ||| |||||||||||||| Sbjct: 19641 tttgagagcaccgcaagcacaatcatggttaaggccaaaatcttgtcgcgcttggttgca 19700 Query: 410 atcccataag 419 || ||||||| Sbjct: 19701 attccataag 19710 Score = 81.8 bits (41), Expect = 2e-12 Identities = 62/69 (89%) Strand = Plus / Plus Query: 424 cctgagtatgatcatggcaggaaagatgaaaccaatcaggacagcagctgtagcaccagt 483 ||||||||||||||||||||||||||| ||||| || || ||||||||||| ||||| || Sbjct: 19815 cctgagtatgatcatggcaggaaagataaaaccgataagaacagcagctgtggcaccggt 19874 Query: 484 gaactggaa 492 ||| ||||| Sbjct: 19875 gaattggaa 19883 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 123 agacaaatgcagcaaacaaaatcctttcaagtgtccaaaacaaaaattaatgg 175 |||||||||||||||| ||||||||||| ||||||| || |||||| ||||| Sbjct: 19427 agacaaatgcagcaaatcaaatcctttcaggtgtccagaataaaaatcaatgg 19479
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 81.8 bits (41), Expect = 2e-12 Identities = 53/57 (92%) Strand = Plus / Minus Query: 436 catggcaggaaagatgaaaccaatcaggacagcagctgtagcaccagtgaactggaa 492 ||||||||| |||||||||||||||||||||||||| || |||||||| |||||||| Sbjct: 25309510 catggcagggaagatgaaaccaatcaggacagcagcagttgcaccagtaaactggaa 25309454 Score = 79.8 bits (40), Expect = 8e-12 Identities = 70/80 (87%) Strand = Plus / Minus Query: 347 gaattggagagcacagcaagcacaatcatggttacagctaaaaccttatcgcgcttggtt 406 ||||||||||| ||||||||||| |||||||||||||| || | ||| || ||||||| | Sbjct: 25309691 gaattggagaggacagcaagcacgatcatggttacagccaagatcttgtcacgcttggat 25309632 Query: 407 gcgatcccataagaatccct 426 ||||| ||||||| |||||| Sbjct: 25309631 gcgattccataaggatccct 25309612
>dbj|AP004792.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0505A04 Length = 159241 Score = 81.8 bits (41), Expect = 2e-12 Identities = 53/57 (92%) Strand = Plus / Minus Query: 436 catggcaggaaagatgaaaccaatcaggacagcagctgtagcaccagtgaactggaa 492 ||||||||| |||||||||||||||||||||||||| || |||||||| |||||||| Sbjct: 128118 catggcagggaagatgaaaccaatcaggacagcagcagttgcaccagtaaactggaa 128062 Score = 79.8 bits (40), Expect = 8e-12 Identities = 70/80 (87%) Strand = Plus / Minus Query: 347 gaattggagagcacagcaagcacaatcatggttacagctaaaaccttatcgcgcttggtt 406 ||||||||||| ||||||||||| |||||||||||||| || | ||| || ||||||| | Sbjct: 128299 gaattggagaggacagcaagcacgatcatggttacagccaagatcttgtcacgcttggat 128240 Query: 407 gcgatcccataagaatccct 426 ||||| ||||||| |||||| Sbjct: 128239 gcgattccataaggatccct 128220
>emb|AL591136.20| Mouse DNA sequence from clone RP23-273P3 on chromosome 11 Contains the 5' end of a novel gene, two novel genes, the Taok1 gene for TAO kinase 1, a eukaryotic translation initiation factor 2 subunit 1 alpha (Eif2s1) pseudogene, a ribosomal protein S2 (Rps2) pseudogene, the Cryba1 gene for crystallin beta A1 and two CpG islands, complete sequence Length = 220230 Score = 42.1 bits (21), Expect = 1.7 Identities = 28/29 (96%), Gaps = 1/29 (3%) Strand = Plus / Minus Query: 122 aagacaaatgcagcaaacaaaatcctttc 150 |||||||| |||||||||||||||||||| Sbjct: 120383 aagacaaa-gcagcaaacaaaatcctttc 120356
>gb|AC011497.6| Homo sapiens chromosome 19 clone CTB-50E14, complete sequence Length = 168586 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 339 gggccactgaattggagagcacagc 363 |||||| |||||||||||||||||| Sbjct: 134105 gggccagtgaattggagagcacagc 134081
>gb|AC068561.2|AC068561 Mus musculus strain C57BL6/J chromosome 6 clone RP23-86H7, complete sequence Length = 230839 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 434 atcatggcaggaaagatgaaa 454 ||||||||||||||||||||| Sbjct: 77435 atcatggcaggaaagatgaaa 77415
>gb|AC158647.2| Mus musculus 6 BAC RP23-275N13 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 208007 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 434 atcatggcaggaaagatgaaa 454 ||||||||||||||||||||| Sbjct: 3973 atcatggcaggaaagatgaaa 3953
>ref|NM_189523.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1733 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 456 caatcaggacagcagctgta 475 |||||||||||||||||||| Sbjct: 1671 caatcaggacagcagctgta 1690
>gb|AC121311.16| Mus musculus chromosome 3, clone RP24-317L5, complete sequence Length = 221261 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 aatcattccgaattgtgcat 247 |||||||||||||||||||| Sbjct: 121333 aatcattccgaattgtgcat 121352
>gb|AC112949.9| Mus musculus chromosome 17, clone RP23-294D3, complete sequence Length = 169739 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 458 atcaggacagcagctgtagc 477 |||||||||||||||||||| Sbjct: 12208 atcaggacagcagctgtagc 12227
>gb|AC123850.3| Mus musculus BAC clone RP23-319K22 from chromosome 5, complete sequence Length = 200934 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 caagtgtccaaaacaaaaat 169 |||||||||||||||||||| Sbjct: 43913 caagtgtccaaaacaaaaat 43932
>gb|AC146172.2| Pan troglodytes BAC clone RP43-24M4 from 7, complete sequence Length = 223283 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 tacataacccccaaaagaat 41 |||||||||||||||||||| Sbjct: 185544 tacataacccccaaaagaat 185525
>gb|AC107792.10| Mus musculus chromosome 17, clone RP23-83F8, complete sequence Length = 253013 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 458 atcaggacagcagctgtagc 477 |||||||||||||||||||| Sbjct: 12971 atcaggacagcagctgtagc 12952
>gb|AC127351.3| Mus musculus BAC clone RP23-66K20 from chromosome 5, complete sequence Length = 238781 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 caagtgtccaaaacaaaaat 169 |||||||||||||||||||| Sbjct: 126748 caagtgtccaaaacaaaaat 126767
>emb|AJ245645.1|PWI245645 Prototheca wickerhamii chloroplast partial genome Length = 22085 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 ataacccccaaaagaataaa 44 |||||||||||||||||||| Sbjct: 12296 ataacccccaaaagaataaa 12277
>emb|CR702608.1|CNS0G530 Tetraodon nigroviridis full-length cDNA Length = 1212 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 463 gacagcagctgtagcaccag 482 |||||||||||||||||||| Sbjct: 830 gacagcagctgtagcaccag 849
>emb|CR692907.2|CNS0FXLJ Tetraodon nigroviridis full-length cDNA Length = 1247 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 463 gacagcagctgtagcaccag 482 |||||||||||||||||||| Sbjct: 831 gacagcagctgtagcaccag 850
>emb|CR689251.1|CNS0FURZ Tetraodon nigroviridis full-length cDNA Length = 1250 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 463 gacagcagctgtagcaccag 482 |||||||||||||||||||| Sbjct: 836 gacagcagctgtagcaccag 855
>gb|AC148154.15| Medicago truncatula clone mth2-17a6, complete sequence Length = 138465 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 370 aatcatggttacagctaaaa 389 |||||||||||||||||||| Sbjct: 102143 aatcatggttacagctaaaa 102162
>emb|AL450306.14| Human DNA sequence from clone RP13-39P12 on chromosome 10 Contains a IMP (inosine monophosphate) dehydrogenase 2 (IMPDH2) pseudogene, a novel gene and the 3' end of the DLG5 gene for discs large (Drosophila) homolog 5 (DLG5) (P-dlg, KIAA0583), complete sequence Length = 48537 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 taacccccaaaagaataaaa 45 |||||||||||||||||||| Sbjct: 43751 taacccccaaaagaataaaa 43770
>ref|XM_793013.1| PREDICTED: Strongylocentrotus purpuratus similar to likely ortholog of mouse ubiquitin-conjugating enzyme E2-230K (LOC593542), mRNA Length = 4176 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 ggagtatggaggcatggagc 288 |||||||||||||||||||| Sbjct: 4086 ggagtatggaggcatggagc 4067
>emb|CR382121.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome A of strain NRRL Y-1140 of Kluyveromyces lactis Length = 1062590 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 tagaagatgctcatcgcatc 330 |||||||||||||||||||| Sbjct: 963607 tagaagatgctcatcgcatc 963626
>emb|CR931802.8| Zebrafish DNA sequence from clone CH211-223A10 in linkage group 13, complete sequence Length = 136909 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 caagtgtccaaaacaaaaat 169 |||||||||||||||||||| Sbjct: 68212 caagtgtccaaaacaaaaat 68231
>gb|AC007551.1| Homo sapiens clone RP11-239C9 from 7p14-15, complete sequence Length = 155401 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 tacataacccccaaaagaat 41 |||||||||||||||||||| Sbjct: 48227 tacataacccccaaaagaat 48246
>gb|AC024940.39| Homo sapiens 12 BAC RP11-627K11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 205952 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 ggccactgaattggagagca 359 |||||||||||||||||||| Sbjct: 153697 ggccactgaattggagagca 153716
>gb|AF352033.1| Homo sapiens DLG5 gene, exons 2 through 32 and complete cds Length = 82500 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 taacccccaaaagaataaaa 45 |||||||||||||||||||| Sbjct: 69982 taacccccaaaagaataaaa 69963
>gb|AC006432.15| Homo sapiens 12p13 PAC RPCI11-726G1 (Roswell Park Cancer Institute Human PAC Library) complete sequence Length = 180685 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 ggccactgaattggagagca 359 |||||||||||||||||||| Sbjct: 117804 ggccactgaattggagagca 117785
>gb|AC093886.2| Homo sapiens BAC clone RP11-666L21 from 4, complete sequence Length = 174332 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tcaataatcattccgaattgtgca 246 |||||||||| ||||||||||||| Sbjct: 32066 tcaataatcagtccgaattgtgca 32089
>gb|AC010746.8| Homo sapiens BAC clone RP11-550E21 from 2, complete sequence Length = 229379 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 tgtccaaaacaaaaattaat 173 |||||||||||||||||||| Sbjct: 58662 tgtccaaaacaaaaattaat 58681
>ref|NM_067115.2| Caenorhabditis elegans Y41C4A.9 (Y41C4A.9) mRNA, complete cds Length = 1874 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 38 gaataaaaatctcgttcttggcaataaa 65 ||||||||||||| || ||||||||||| Sbjct: 456 gaataaaaatctcattattggcaataaa 483
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 456 caatcaggacagcagctgta 475 |||||||||||||||||||| Sbjct: 4050947 caatcaggacagcagctgta 4050928
>gb|AC092821.11| Homo sapiens 12 BAC RP11-525E9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 121181 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 ggccactgaattggagagca 359 |||||||||||||||||||| Sbjct: 75849 ggccactgaattggagagca 75868
>gb|AC131945.1| Homo sapiens BAC clone RP11-5K24 from 4, complete sequence Length = 135190 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tcaataatcattccgaattgtgca 246 |||||||||| ||||||||||||| Sbjct: 93838 tcaataatcagtccgaattgtgca 93861
>gb|AC133107.2| Homo sapiens BAC clone RP11-640O10 from 2, complete sequence Length = 120939 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 taacccccaaaagaataaaa 45 |||||||||||||||||||| Sbjct: 15491 taacccccaaaagaataaaa 15472
>gb|AC005297.1| Homo sapiens X BAC GS1-466O4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 177503 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 12 tatgaacatgtacataacccccaaaaga 39 ||||||||||| ||| |||||||||||| Sbjct: 43956 tatgaacatgttcatcacccccaaaaga 43929
>dbj|AP002903.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0509B06 Length = 104515 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 456 caatcaggacagcagctgta 475 |||||||||||||||||||| Sbjct: 17690 caatcaggacagcagctgta 17671
>gb|AC012156.14|AC012156 Homo sapiens 12p11-37.2-54.4 BAC RP11-433D24 (Rosewell Park Cancer Institute Human Bac Library) complete sequence Length = 162200 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 ggccactgaattggagagca 359 |||||||||||||||||||| Sbjct: 35644 ggccactgaattggagagca 35625
>emb|BX682230.4| Mouse DNA sequence from clone RP23-236D21 on chromosome X, complete sequence Length = 61120 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 ccaaaacaaaaattaatgga 176 |||||||||||||||||||| Sbjct: 39660 ccaaaacaaaaattaatgga 39641
>dbj|AK120458.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013105O22, full insert sequence Length = 2063 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 456 caatcaggacagcagctgta 475 |||||||||||||||||||| Sbjct: 2014 caatcaggacagcagctgta 2033
>dbj|AK067702.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013119N03, full insert sequence Length = 1734 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 456 caatcaggacagcagctgta 475 |||||||||||||||||||| Sbjct: 1672 caatcaggacagcagctgta 1691
>gb|AC153593.4| Mus musculus 6 BAC RP23-131B11 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 205164 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 27 aacccccaaaagaataaaaatctc 50 |||||||||| ||||||||||||| Sbjct: 118517 aacccccaaacgaataaaaatctc 118540
>emb|CT025561.11| Mouse DNA sequence from clone RP23-308G10 on chromosome 9, complete sequence Length = 224154 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 tacataacccccaaaagaat 41 |||||||||||||||||||| Sbjct: 111628 tacataacccccaaaagaat 111647
>emb|AL032627.2|CEY41C4A Caenorhabditis elegans YAC Y41C4A, complete sequence Length = 129061 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 38 gaataaaaatctcgttcttggcaataaa 65 ||||||||||||| || ||||||||||| Sbjct: 80184 gaataaaaatctcattattggcaataaa 80157
>gb|U22525.1|KLU22525 Kluyveromyces lactis high affinity glucose transporter (HGT1) gene, complete cds Length = 2425 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 tagaagatgctcatcgcatc 330 |||||||||||||||||||| Sbjct: 62 tagaagatgctcatcgcatc 81
>emb|CT476826.2| Pan troglodytes chromosome X BAC RP43-034A07, complete sequence, whole genome shotgun sequence Length = 151456 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 12 tatgaacatgtacataacccccaaaaga 39 ||||||||||| ||| |||||||||||| Sbjct: 52156 tatgaacatgttcatcacccccaaaaga 52183 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,584,581 Number of Sequences: 3902068 Number of extensions: 5584581 Number of successful extensions: 110567 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 52 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 110342 Number of HSP's gapped (non-prelim): 220 length of query: 493 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 471 effective length of database: 17,147,199,772 effective search space: 8076331092612 effective search space used: 8076331092612 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)