>AMPN_ECOLI (P04825) Aminopeptidase N (EC 3.4.11.2) (Alpha-aminoacylpeptide|
            hydrolase)
          Length = 869

 Score =  119 bits (299), Expect = 6e-27
 Identities = 64/130 (49%), Positives = 84/130 (64%), Gaps = 1/130 (0%)
 Frame = -3

Query: 629  QDYLVVSKWFALQATSDIPGNVANVRKLLAHPAFDMRNPNKVYSLIGGFCGS-PVSFHAK 453
            Q+ LV+ KWF LQATS     +  VR LL H +F M NPN++ SLIG F GS P +FHA+
Sbjct: 740  QNGLVMDKWFILQATSPAANVLETVRGLLQHRSFTMSNPNRIRSLIGAFAGSNPAAFHAE 799

Query: 452  DGSGYKFLGEVVLQLDKINPQVASRMVSAFSRWRRYDETRQALAKAQLEMIISANGLSEN 273
            DGSGY FL E++  L+  NPQVASR++    R +RYD  RQ   +A LE +     LS +
Sbjct: 800  DGSGYLFLVEMLTDLNSRNPQVASRLIEPLIRLKRYDAKRQEKMRAALEQLKGLENLSGD 859

Query: 272  VYEIASKSLA 243
            +YE  +K+LA
Sbjct: 860  LYEKITKALA 869

>AMPN_HAEIN (P45274) Aminopeptidase N (EC 3.4.11.2) (Alpha-aminoacylpeptide|
            hydrolase)
          Length = 869

 Score =  105 bits (263), Expect = 9e-23
 Identities = 53/130 (40%), Positives = 83/130 (63%), Gaps = 1/130 (0%)
 Frame = -3

Query: 632  QQDYLVVSKWFALQATSDIPGNVANVRKLLAHPAFDMRNPNKVYSLIGGFCGSPV-SFHA 456
            Q D LV+ KWFALQAT      +  ++ L+ HP+F+  NPN++ SL+G F    + +FH 
Sbjct: 739  QHDGLVMDKWFALQATRPDDNVLEIIQLLMDHPSFNFNNPNRLRSLVGSFANHNLKAFHN 798

Query: 455  KDGSGYKFLGEVVLQLDKINPQVASRMVSAFSRWRRYDETRQALAKAQLEMIISANGLSE 276
              GSGY+FL +V+++L++ NPQVA+R++    R+ R+D  RQ L K  LE +     LS+
Sbjct: 799  VSGSGYRFLTDVLIRLNESNPQVAARLIEPLIRFSRFDAQRQTLMKRALERLSVVENLSK 858

Query: 275  NVYEIASKSL 246
            +++E   K+L
Sbjct: 859  DLFEKIEKAL 868

>AMPN_CAUCR (P37893) Aminopeptidase N (EC 3.4.11.2) (Alpha-aminoacylpeptide|
            hydrolase)
          Length = 863

 Score =  102 bits (255), Expect = 7e-22
 Identities = 52/126 (41%), Positives = 74/126 (58%), Gaps = 1/126 (0%)
 Frame = -3

Query: 620  LVVSKWFALQATSDIPGNVANVRKLLAHPAFDMRNPNKVYSLIGGFCG-SPVSFHAKDGS 444
            LV+ KWFA+Q     P  +  V  L  HP F+  NPN++ +L+  F   +P  FH   G+
Sbjct: 737  LVLDKWFAVQGRDPNPDALERVIALTQHPDFEPTNPNRLRALVSTFANFNPARFHDPSGA 796

Query: 443  GYKFLGEVVLQLDKINPQVASRMVSAFSRWRRYDETRQALAKAQLEMIISANGLSENVYE 264
            GY FL + +L++D  NP  A+R+V     WRRY      L +AQLE I++   LS+NV E
Sbjct: 797  GYAFLADEILKVDAFNPMTAARLVEPLGGWRRYKPELGDLMRAQLERIVAHPNLSKNVLE 856

Query: 263  IASKSL 246
            +ASK+L
Sbjct: 857  LASKAL 862

>AMP1_PLAFQ (O96935) M1-family aminopeptidase (EC 3.4.11.-) (Pfa-M1)|
          Length = 1085

 Score = 67.8 bits (164), Expect = 3e-11
 Identities = 35/123 (28%), Positives = 60/123 (48%)
 Frame = -3

Query: 632  QQDYLVVSKWFALQATSDIPGNVANVRKLLAHPAFDMRNPNKVYSLIGGFCGSPVSFHAK 453
            + D L++ +W    + SD       ++KL      D +NPN + ++   F  +   FH  
Sbjct: 954  KDDELLLQEWLKTVSRSDRKDIYEILKKLENEVLKDSKNPNDIRAVYLPFTNNLRRFHDI 1013

Query: 452  DGSGYKFLGEVVLQLDKINPQVASRMVSAFSRWRRYDETRQALAKAQLEMIISANGLSEN 273
             G GYK + EV+ + DK NP VA+++   F  W + D  RQ L   ++  ++    +S N
Sbjct: 1014 SGKGYKLIAEVITKTDKFNPMVATQLCEPFKLWNKLDTKRQELMLNEMNTMLQEPNISNN 1073

Query: 272  VYE 264
            + E
Sbjct: 1074 LKE 1076

>POLG_PSBMV (P29152) Genome polyprotein [Contains: P1 proteinase (N-terminal|
           protein); Helper component proteinase (EC 3.4.22.45)
           (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
           inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
           (6K2); Viral ge
          Length = 3206

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
 Frame = -3

Query: 557 VRKLLAHPAFDMRNPNKVYSLIGGFCGSPVSFHAKDGSGYKFLGEVVLQLDKINPQVASR 378
           +R+ + +  FDM N  KV+ LIG         H +DG        V   L+++N  + + 
Sbjct: 500 LRQRIKNTTFDMGNNTKVHELIG---------HRQDG--------VFRHLNRLNNSILAA 542

Query: 377 MVSAFSRWRRYDETRQALAKAQLEMI--ISANGLSENVYEIASKS 249
             S+   W   +E+   LA+   +    I++ G+S    +I++K+
Sbjct: 543 NGSSTIEWESMNESLLELARWHNKRTESIASGGISSFRNKISAKA 587

>RPOM_HUMAN (O00411) DNA-directed RNA polymerase, mitochondrial precursor (EC|
            2.7.7.6) (MtRPOL)
          Length = 1230

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +2

Query: 107  TIVACYFTHAKYSRIYSVKYTFRALVMVKGSTGRIKFVSLHQETKLPDFSRLSHRHF 277
            T + CY     +  ++   +T  A V V     R +FV LH E  L D SR   + F
Sbjct: 1135 TALHCYRKGLTFVSVHDCYWTHAADVSVMNQVCREQFVRLHSEPILQDLSRFLVKRF 1191

>BMAL1_HUMAN (O00327) Aryl hydrocarbon receptor nuclear translocator-like|
           protein 1 (Brain and muscle ARNT-like 1) (Member of PAS
           protein 3) (Basic-helix-loop-helix-PAS orphan MOP3)
           (bHLH-PAS protein JAP3)
          Length = 626

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 14/95 (14%)
 Frame = +2

Query: 302 SSPTGP*QELVSSRHISSIERMLTP-----CGMPPEDLFCR------AVK---QLHPRTC 439
           SS T P + L+ ++    ++  +TP     C       FCR      +VK   +  P TC
Sbjct: 210 SSDTAPRERLIDAKTGLPVKTDITPGPSRLCSGARRSFFCRMKCNRPSVKVEDKDFPSTC 269

Query: 440 NQNHLSRENSQVTHKSLQLKSIPCSDSACQKQDEP 544
           ++    R++    H +  LKS P +     + +EP
Sbjct: 270 SKKKADRKSFCTIHSTGYLKSWPPTKMGLDEDNEP 304


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,831,638
Number of Sequences: 219361
Number of extensions: 1913843
Number of successful extensions: 4773
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4769
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5881538857
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)