ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags23d12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_477026.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3193 Score = 569 bits (287), Expect = e-159 Identities = 449/503 (89%) Strand = Plus / Minus Query: 174 tttagccatttgcaacaatttcatggatcctgtcactgacctccggatcatctgatctga 233 |||||||||||||||| |||||||||||| ||||||||| ||| |||||||||||||||| Sbjct: 2900 tttagccatttgcaacgatttcatggatcttgtcactgatctcaggatcatctgatctga 2841 Query: 234 cagctagcttcatggccacttctttcggcccgctgattccaaatgatagtctcaccaaaa 293 | |||||||||||||||||||| ||||| ||||| | ||| ||||| || ||||| |||| Sbjct: 2840 ctgctagcttcatggccacttccttcggtccgctaagtccgaatgacagcctcactaaaa 2781 Query: 294 ctttcacattaccgatgaacacacctgaaagcaggcaagtgtgcgatctcgaattgtttt 353 |||||||||| ||||| |||||||| || |||||||||||||| || ||||||||| || Sbjct: 2780 ctttcacattgccgataaacacaccagatagcaggcaagtgtgtgacctcgaattgcttg 2721 Query: 354 ggacaacatcggttccctcgcaaggctgcatgccaaggatgcttataacagcactcacag 413 |||| ||||| ||||||||||| ||||||||||||||||||| ||| ||||||||||||| Sbjct: 2720 ggaccacatcagttccctcgcagggctgcatgccaaggatgcctatgacagcactcacag 2661 Query: 414 cctcagccaagttctccctaacaccaagtccatactcatcgacccgctcactttctggat 473 ||||||||| | | ||||| | ||||| ||||||||||| |||||||| |||||||||| Sbjct: 2660 cctcagccaggctttccctggcgccaagcccatactcatcaacccgctcgctttctggat 2601 Query: 474 ccatgctttcccaagcatttcggaagttcgaaacccccaccttcaacatgtaatcagcag 533 ||||||||||||||||||||| |||||| ||||| || ||||||||||| |||||||||| Sbjct: 2600 ccatgctttcccaagcatttctgaagttagaaactccaaccttcaacatataatcagcag 2541 Query: 534 aaataatttcaaaatcttctagctgatactcatcctcaacaccgtcatcctcagcttcac 593 || ||||||| | |||||| ||||| |||||||||||||| || ||||| |||||||||| Sbjct: 2540 aagtaatttccagatcttcaagctggtactcatcctcaacgccatcatcatcagcttcac 2481 Query: 594 ctgtggacgaatcaacctctttaacaatgaatttcaatatatttgagaacttcccagtgg 653 ||||||| | |||||||||||||||||| ||||||| ||||||||||||||||||||| | Sbjct: 2480 ctgtggatggatcaacctctttaacaataaatttcagtatatttgagaacttcccagtag 2421 Query: 654 caaggacaccttctggcttttca 676 |||||||||||||| |||||||| Sbjct: 2420 caaggacaccttctagcttttca 2398
>dbj|AK100095.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004B12, full insert sequence Length = 3193 Score = 561 bits (283), Expect = e-156 Identities = 448/503 (89%) Strand = Plus / Minus Query: 174 tttagccatttgcaacaatttcatggatcctgtcactgacctccggatcatctgatctga 233 |||||||||||||||| |||||||||||| ||||||||| ||| |||||||||||||||| Sbjct: 2900 tttagccatttgcaacgatttcatggatcttgtcactgatctcaggatcatctgatctga 2841 Query: 234 cagctagcttcatggccacttctttcggcccgctgattccaaatgatagtctcaccaaaa 293 | |||||||||||||||||||| ||||| ||||| | ||| ||||| || ||||| |||| Sbjct: 2840 ctgctagcttcatggccacttccttcggtccgctaagtccgaatgacagcctcactaaaa 2781 Query: 294 ctttcacattaccgatgaacacacctgaaagcaggcaagtgtgcgatctcgaattgtttt 353 |||||||||| ||||| |||||||| || |||||||||||||| || ||||||||| || Sbjct: 2780 ctttcacattgccgataaacacaccagatagcaggcaagtgtgtgacctcgaattgcttg 2721 Query: 354 ggacaacatcggttccctcgcaaggctgcatgccaaggatgcttataacagcactcacag 413 |||| ||||| ||||||||||| ||||||||||||||||||| ||| ||||||||||||| Sbjct: 2720 ggaccacatcagttccctcgcagggctgcatgccaaggatgcctatgacagcactcacag 2661 Query: 414 cctcagccaagttctccctaacaccaagtccatactcatcgacccgctcactttctggat 473 ||||||||| | | ||||| | ||||| ||||||||||| |||||||| |||||||||| Sbjct: 2660 cctcagccaggctttccctggcgccaagcccatactcatcaacccgctcgctttctggat 2601 Query: 474 ccatgctttcccaagcatttcggaagttcgaaacccccaccttcaacatgtaatcagcag 533 ||||||||||||||||||||| |||||| ||||| || ||||||||||| |||||||||| Sbjct: 2600 ccatgctttcccaagcatttctgaagttagaaactccaaccttcaacatataatcagcag 2541 Query: 534 aaataatttcaaaatcttctagctgatactcatcctcaacaccgtcatcctcagcttcac 593 || ||||||| | |||||| ||||| |||| ||||||||| || ||||| |||||||||| Sbjct: 2540 aagtaatttccagatcttcaagctggtacttatcctcaacgccatcatcatcagcttcac 2481 Query: 594 ctgtggacgaatcaacctctttaacaatgaatttcaatatatttgagaacttcccagtgg 653 ||||||| | |||||||||||||||||| ||||||| ||||||||||||||||||||| | Sbjct: 2480 ctgtggatggatcaacctctttaacaataaatttcagtatatttgagaacttcccagtag 2421 Query: 654 caaggacaccttctggcttttca 676 |||||||||||||| |||||||| Sbjct: 2420 caaggacaccttctagcttttca 2398
>gb|BT017026.1| Zea mays clone EK07D2312G12.c mRNA sequence Length = 1125 Score = 454 bits (229), Expect = e-124 Identities = 436/505 (86%) Strand = Plus / Minus Query: 172 gttttagccatttgcaacaatttcatggatcctgtcactgacctccggatcatctgatct 231 |||||||||||| || |||||||| |||||||||||||||| ||| |||||||| ||||| Sbjct: 960 gttttagccattagcgacaatttcgtggatcctgtcactgatctctggatcatcagatct 901 Query: 232 gacagctagcttcatggccacttctttcggcccgctgattccaaatgatagtctcaccaa 291 || || |||||||||||||| || ||||| | || ||||||||||| ||||||||||| Sbjct: 900 aactgccagcttcatggccacctccttcggtgcactaattccaaatgacagtctcaccaa 841 Query: 292 aactttcacattaccgatgaacacacctgaaagcaggcaagtgtgcgatctcgaattgtt 351 |||||||| || || || |||||||| || ||||| ||||||||||| || |||||| | Sbjct: 840 gactttcacgttgccaataaacacaccagagagcagacaagtgtgcgaccttgaattgct 781 Query: 352 ttggacaacatcggttccctcgcaaggctgcatgccaaggatgcttataacagcactcac 411 | |||| || || |||||||| ||||||||||||||||||||||||||||||||||| || Sbjct: 780 tgggaccacgtcagttccctcacaaggctgcatgccaaggatgcttataacagcacttac 721 Query: 412 agcctcagccaagttctccctaacaccaagtccatactcatcgacccgctcactttctgg 471 ||||||||||||| ||||||| || ||||| |||||||| || || |||||| | ||||| Sbjct: 720 agcctcagccaagctctcccttactccaagcccatactcgtcaactcgctcagtctctgg 661 Query: 472 atccatgctttcccaagcatttcggaagttcgaaacccccaccttcaacatgtaatcagc 531 ||||||| ||||||| |||||||||||||| || || |||||||||||||| |||||||| Sbjct: 660 atccatgttttcccaggcatttcggaagttagatactcccaccttcaacatataatcagc 601 Query: 532 agaaataatttcaaaatcttctagctgatactcatcctcaacaccgtcatcctcagcttc 591 ||||| ||||||| |||||| ||||| ||||||||||| ||||| ||||| |||||||| Sbjct: 600 agaaacgatttcaagatcttcaagctggtactcatcctcgacaccatcatcttcagcttc 541 Query: 592 acctgtggacgaatcaacctctttaacaatgaatttcaatatatttgagaacttcccagt 651 ||| ||||| | ||||||||| ||| ||| |||| ||| |||| ||||||||| || || Sbjct: 540 acccgtggatggatcaacctccttaccaaagaatgtcaggatatatgagaacttgccggt 481 Query: 652 ggcaaggacaccttctggcttttca 676 ||||| ||||||||||||||||||| Sbjct: 480 ggcaatgacaccttctggcttttca 456
>gb|BT017505.1| Zea mays clone EL01N0414H09.c mRNA sequence Length = 886 Score = 412 bits (208), Expect = e-112 Identities = 415/484 (85%) Strand = Plus / Minus Query: 189 caatttcatggatcctgtcactgacctccggatcatctgatctgacagctagcttcatgg 248 ||||||| |||||| ||||||||| ||| |||||||| ||||| || || || ||||||| Sbjct: 679 caatttcgtggatcttgtcactgagctctggatcatcagatctaactgccaggttcatgg 620 Query: 249 ccacttctttcggcccgctgattccaaatgatagtctcaccaaaactttcacattaccga 308 |||| || ||||| | ||||||||||| || ||||||||||| |||||||| || || | Sbjct: 619 ccacctccttcggggcactgattccaaaggaaagtctcaccaagactttcacgttgccaa 560 Query: 309 tgaacacacctgaaagcaggcaagtgtgcgatctcgaattgttttggacaacatcggttc 368 | | ||| || || ||||| ||||||||||| || |||||| || |||| || || || | Sbjct: 559 taaccaccccagagagcagacaagtgtgcgaccttgaattgcttgggaccacgtcagtcc 500 Query: 369 cctcgcaaggctgcatgccaaggatgcttataacagcactcacagcctcagccaagttct 428 |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| Sbjct: 499 cctcacaaggctgcatgccaaggatgcttataacagcacttacagcctcagccaagctct 440 Query: 429 ccctaacaccaagtccatactcatcgacccgctcactttctggatccatgctttcccaag 488 |||| || ||||| ||||||||||| || |||||| | |||||||||||| ||||||| | Sbjct: 439 cccttactccaagcccatactcatcaactcgctcagtctctggatccatgttttcccagg 380 Query: 489 catttcggaagttcgaaacccccaccttcaacatgtaatcagcagaaataatttcaaaat 548 ||||||||||||| || || |||||||||||||| ||||||||||||| || |||| || Sbjct: 379 catttcggaagttagatactcccaccttcaacatataatcagcagaaactatctcaagat 320 Query: 549 cttctagctgatactcatcctcaacaccgtcatcctcagcttcacctgtggacgaatcaa 608 |||| ||||| ||||||||||||||||| ||||| |||| |||||| ||||| | ||||| Sbjct: 319 cttcaagctggtactcatcctcaacaccatcatcttcagtttcacccgtggatggatcaa 260 Query: 609 cctctttaacaatgaatttcaatatatttgagaacttcccagtggcaaggacaccttctg 668 |||| |||||||||||||||| |||||||||||||| ||||| |||| |||||| |||| Sbjct: 259 cctccttaacaatgaatttcaggatatttgagaacttgccagtagcaatgacaccctctg 200 Query: 669 gctt 672 |||| Sbjct: 199 gctt 196
>ref|NM_187618.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2481 Score = 293 bits (148), Expect = 4e-76 Identities = 406/492 (82%) Strand = Plus / Minus Query: 185 gcaacaatttcatggatcctgtcactgacctccggatcatctgatctgacagctagcttc 244 |||||||| || |||||| |||||||||| || ||||||||||| ||||| || |||||| Sbjct: 2471 gcaacaatctcgtggatcttgtcactgacttcgggatcatctgacctgacggcaagcttc 2412 Query: 245 atggccacttctttcggcccgctgattccaaatgatagtctcaccaaaactttcacatta 304 || |||||||| || |||||||| | |||||| ||||| || || | ||| || | | Sbjct: 2411 atcgccacttccttgggcccgctcagtccaaacgatagcctgacaagaaccttggcgtcg 2352 Query: 305 ccgatgaacacacctgaaagcaggcaagtgtgcgatctcgaattgttttggacaacatcg 364 |||||||||||||| || |||||||||||||||||||| | ||| ||| | ||||| || Sbjct: 2351 ccgatgaacacaccagacagcaggcaagtgtgcgatcttgcattctttggtacaacctca 2292 Query: 365 gttccctcgcaaggctgcatgccaaggatgcttataacagcactcacagcctcagccaag 424 || ||||| ||||||||||| |||||||| || || |||||||||||||||||||||||| Sbjct: 2291 gtgccctcacaaggctgcataccaaggatactaatgacagcactcacagcctcagccaag 2232 Query: 425 ttctccctaacaccaagtccatactcatcgacccgctcactttctggatccatgctttcc 484 |||| |||||||||||||||||||||||||| |||||||||||||| ||||| ||||| Sbjct: 2231 ctctctctaacaccaagtccatactcatcgacacgctcactttctgggtccatattttcc 2172 Query: 485 caagcatttcggaagttcgaaacccccaccttcaacatgtaatcagcagaaataatttca 544 || ||||| | |||||| || || | ||| ||| |||||||||||| |||| |||||| Sbjct: 2171 caggcattcctgaagttggagactgcaaccctcagcatgtaatcagccgaaacaatttcc 2112 Query: 545 aaatcttctagctgatactcatcctcaacaccgtcatcctcagcttcacctgtggacgaa 604 | ||||| | ||| || |||||||| ||||| || || ||| |||| ||||| || | Sbjct: 2111 aggtcttcgatctggtattcatcctccacaccatcctcatcaacttcccctgtagatgtg 2052 Query: 605 tcaacctctttaacaatgaatttcaatatatttgagaacttcccagtggcaaggacacct 664 ||||||||||||||||| || |||| | |||||| || |||||||| ||| | ||| | Sbjct: 2051 tcaacctctttaacaataaacttcagcacatttgaaaatttcccagtagcaggaacatgt 1992 Query: 665 tctggcttttca 676 |||||||||||| Sbjct: 1991 tctggcttttca 1980
>dbj|AK068454.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155G01, full insert sequence Length = 3214 Score = 293 bits (148), Expect = 4e-76 Identities = 406/492 (82%) Strand = Plus / Minus Query: 185 gcaacaatttcatggatcctgtcactgacctccggatcatctgatctgacagctagcttc 244 |||||||| || |||||| |||||||||| || ||||||||||| ||||| || |||||| Sbjct: 2825 gcaacaatctcgtggatcttgtcactgacttcgggatcatctgacctgacggcaagcttc 2766 Query: 245 atggccacttctttcggcccgctgattccaaatgatagtctcaccaaaactttcacatta 304 || |||||||| || |||||||| | |||||| ||||| || || | ||| || | | Sbjct: 2765 atcgccacttccttgggcccgctcagtccaaacgatagcctgacaagaaccttggcgtcg 2706 Query: 305 ccgatgaacacacctgaaagcaggcaagtgtgcgatctcgaattgttttggacaacatcg 364 |||||||||||||| || |||||||||||||||||||| | ||| ||| | ||||| || Sbjct: 2705 ccgatgaacacaccagacagcaggcaagtgtgcgatcttgcattctttggtacaacctca 2646 Query: 365 gttccctcgcaaggctgcatgccaaggatgcttataacagcactcacagcctcagccaag 424 || ||||| ||||||||||| |||||||| || || |||||||||||||||||||||||| Sbjct: 2645 gtgccctcacaaggctgcataccaaggatactaatgacagcactcacagcctcagccaag 2586 Query: 425 ttctccctaacaccaagtccatactcatcgacccgctcactttctggatccatgctttcc 484 |||| |||||||||||||||||||||||||| |||||||||||||| ||||| ||||| Sbjct: 2585 ctctctctaacaccaagtccatactcatcgacacgctcactttctgggtccatattttcc 2526 Query: 485 caagcatttcggaagttcgaaacccccaccttcaacatgtaatcagcagaaataatttca 544 || ||||| | |||||| || || | ||| ||| |||||||||||| |||| |||||| Sbjct: 2525 caggcattcctgaagttggagactgcaaccctcagcatgtaatcagccgaaacaatttcc 2466 Query: 545 aaatcttctagctgatactcatcctcaacaccgtcatcctcagcttcacctgtggacgaa 604 | ||||| | ||| || |||||||| ||||| || || ||| |||| ||||| || | Sbjct: 2465 aggtcttcgatctggtattcatcctccacaccatcctcatcaacttcccctgtagatgtg 2406 Query: 605 tcaacctctttaacaatgaatttcaatatatttgagaacttcccagtggcaaggacacct 664 ||||||||||||||||| || |||| | |||||| || |||||||| ||| | ||| | Sbjct: 2405 tcaacctctttaacaataaacttcagcacatttgaaaatttcccagtagcaggaacatgt 2346 Query: 665 tctggcttttca 676 |||||||||||| Sbjct: 2345 tctggcttttca 2334
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 268 bits (135), Expect = 2e-68 Identities = 216/243 (88%) Strand = Plus / Minus Query: 369 cctcgcaaggctgcatgccaaggatgcttataacagcactcacagcctcagccaagttct 428 ||||||| ||||||||||||||||||| ||| |||||||||||||||||||||| | | | Sbjct: 5490995 cctcgcagggctgcatgccaaggatgcctatgacagcactcacagcctcagccaggcttt 5490936 Query: 429 ccctaacaccaagtccatactcatcgacccgctcactttctggatccatgctttcccaag 488 |||| | ||||| ||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct: 5490935 ccctggcgccaagcccatactcatcaacccgctcgctttctggatccatgctttcccaag 5490876 Query: 489 catttcggaagttcgaaacccccaccttcaacatgtaatcagcagaaataatttcaaaat 548 |||||| |||||| ||||| || ||||||||||| |||||||||||| ||||||| | || Sbjct: 5490875 catttctgaagttagaaactccaaccttcaacatataatcagcagaagtaatttccagat 5490816 Query: 549 cttctagctgatactcatcctcaacaccgtcatcctcagcttcacctgtggacgaatcaa 608 |||| ||||| |||||||||||||| || ||||| ||||||||||||||||| | ||||| Sbjct: 5490815 cttcaagctggtactcatcctcaacgccatcatcatcagcttcacctgtggatggatcaa 5490756 Query: 609 cct 611 ||| Sbjct: 5490755 cct 5490753 Score = 210 bits (106), Expect = 4e-51 Identities = 175/198 (88%) Strand = Plus / Minus Query: 174 tttagccatttgcaacaatttcatggatcctgtcactgacctccggatcatctgatctga 233 |||||||||||||||| |||||||||||| ||||||||| ||| |||||||||||||||| Sbjct: 5491408 tttagccatttgcaacgatttcatggatcttgtcactgatctcaggatcatctgatctga 5491349 Query: 234 cagctagcttcatggccacttctttcggcccgctgattccaaatgatagtctcaccaaaa 293 | |||||||||||||||||||| ||||| ||||| | ||| ||||| || ||||| |||| Sbjct: 5491348 ctgctagcttcatggccacttccttcggtccgctaagtccgaatgacagcctcactaaaa 5491289 Query: 294 ctttcacattaccgatgaacacacctgaaagcaggcaagtgtgcgatctcgaattgtttt 353 |||||||||| ||||| |||||||| || |||||||||||||| || ||||||||| || Sbjct: 5491288 ctttcacattgccgataaacacaccagatagcaggcaagtgtgtgacctcgaattgcttg 5491229 Query: 354 ggacaacatcggttccct 371 |||| ||||| ||||||| Sbjct: 5491228 ggaccacatcagttccct 5491211 Score = 105 bits (53), Expect = 2e-19 Identities = 65/69 (94%) Strand = Plus / Minus Query: 608 acctctttaacaatgaatttcaatatatttgagaacttcccagtggcaaggacaccttct 667 |||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||| Sbjct: 5490483 acctctttaacaataaatttcagtatatttgagaacttcccagtagcaaggacaccttct 5490424 Query: 668 ggcttttca 676 |||||||| Sbjct: 5490423 agcttttca 5490415 Score = 40.1 bits (20), Expect = 9.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 615 taacaatgaatttcaatatatttgagaa 642 ||||||| ||||| |||||||||||||| Sbjct: 12792616 taacaattaattttaatatatttgagaa 12792643
>dbj|AP005171.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0081K20 Length = 117287 Score = 268 bits (135), Expect = 2e-68 Identities = 216/243 (88%) Strand = Plus / Minus Query: 369 cctcgcaaggctgcatgccaaggatgcttataacagcactcacagcctcagccaagttct 428 ||||||| ||||||||||||||||||| ||| |||||||||||||||||||||| | | | Sbjct: 4080 cctcgcagggctgcatgccaaggatgcctatgacagcactcacagcctcagccaggcttt 4021 Query: 429 ccctaacaccaagtccatactcatcgacccgctcactttctggatccatgctttcccaag 488 |||| | ||||| ||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct: 4020 ccctggcgccaagcccatactcatcaacccgctcgctttctggatccatgctttcccaag 3961 Query: 489 catttcggaagttcgaaacccccaccttcaacatgtaatcagcagaaataatttcaaaat 548 |||||| |||||| ||||| || ||||||||||| |||||||||||| ||||||| | || Sbjct: 3960 catttctgaagttagaaactccaaccttcaacatataatcagcagaagtaatttccagat 3901 Query: 549 cttctagctgatactcatcctcaacaccgtcatcctcagcttcacctgtggacgaatcaa 608 |||| ||||| |||||||||||||| || ||||| ||||||||||||||||| | ||||| Sbjct: 3900 cttcaagctggtactcatcctcaacgccatcatcatcagcttcacctgtggatggatcaa 3841 Query: 609 cct 611 ||| Sbjct: 3840 cct 3838 Score = 210 bits (106), Expect = 4e-51 Identities = 175/198 (88%) Strand = Plus / Minus Query: 174 tttagccatttgcaacaatttcatggatcctgtcactgacctccggatcatctgatctga 233 |||||||||||||||| |||||||||||| ||||||||| ||| |||||||||||||||| Sbjct: 4493 tttagccatttgcaacgatttcatggatcttgtcactgatctcaggatcatctgatctga 4434 Query: 234 cagctagcttcatggccacttctttcggcccgctgattccaaatgatagtctcaccaaaa 293 | |||||||||||||||||||| ||||| ||||| | ||| ||||| || ||||| |||| Sbjct: 4433 ctgctagcttcatggccacttccttcggtccgctaagtccgaatgacagcctcactaaaa 4374 Query: 294 ctttcacattaccgatgaacacacctgaaagcaggcaagtgtgcgatctcgaattgtttt 353 |||||||||| ||||| |||||||| || |||||||||||||| || ||||||||| || Sbjct: 4373 ctttcacattgccgataaacacaccagatagcaggcaagtgtgtgacctcgaattgcttg 4314 Query: 354 ggacaacatcggttccct 371 |||| ||||| ||||||| Sbjct: 4313 ggaccacatcagttccct 4296 Score = 105 bits (53), Expect = 2e-19 Identities = 65/69 (94%) Strand = Plus / Minus Query: 608 acctctttaacaatgaatttcaatatatttgagaacttcccagtggcaaggacaccttct 667 |||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||| Sbjct: 3568 acctctttaacaataaatttcagtatatttgagaacttcccagtagcaaggacaccttct 3509 Query: 668 ggcttttca 676 |||||||| Sbjct: 3508 agcttttca 3500
>dbj|AP005259.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0519E02 Length = 139321 Score = 268 bits (135), Expect = 2e-68 Identities = 216/243 (88%) Strand = Plus / Minus Query: 369 cctcgcaaggctgcatgccaaggatgcttataacagcactcacagcctcagccaagttct 428 ||||||| ||||||||||||||||||| ||| |||||||||||||||||||||| | | | Sbjct: 124976 cctcgcagggctgcatgccaaggatgcctatgacagcactcacagcctcagccaggcttt 124917 Query: 429 ccctaacaccaagtccatactcatcgacccgctcactttctggatccatgctttcccaag 488 |||| | ||||| ||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct: 124916 ccctggcgccaagcccatactcatcaacccgctcgctttctggatccatgctttcccaag 124857 Query: 489 catttcggaagttcgaaacccccaccttcaacatgtaatcagcagaaataatttcaaaat 548 |||||| |||||| ||||| || ||||||||||| |||||||||||| ||||||| | || Sbjct: 124856 catttctgaagttagaaactccaaccttcaacatataatcagcagaagtaatttccagat 124797 Query: 549 cttctagctgatactcatcctcaacaccgtcatcctcagcttcacctgtggacgaatcaa 608 |||| ||||| |||||||||||||| || ||||| ||||||||||||||||| | ||||| Sbjct: 124796 cttcaagctggtactcatcctcaacgccatcatcatcagcttcacctgtggatggatcaa 124737 Query: 609 cct 611 ||| Sbjct: 124736 cct 124734 Score = 210 bits (106), Expect = 4e-51 Identities = 175/198 (88%) Strand = Plus / Minus Query: 174 tttagccatttgcaacaatttcatggatcctgtcactgacctccggatcatctgatctga 233 |||||||||||||||| |||||||||||| ||||||||| ||| |||||||||||||||| Sbjct: 125389 tttagccatttgcaacgatttcatggatcttgtcactgatctcaggatcatctgatctga 125330 Query: 234 cagctagcttcatggccacttctttcggcccgctgattccaaatgatagtctcaccaaaa 293 | |||||||||||||||||||| ||||| ||||| | ||| ||||| || ||||| |||| Sbjct: 125329 ctgctagcttcatggccacttccttcggtccgctaagtccgaatgacagcctcactaaaa 125270 Query: 294 ctttcacattaccgatgaacacacctgaaagcaggcaagtgtgcgatctcgaattgtttt 353 |||||||||| ||||| |||||||| || |||||||||||||| || ||||||||| || Sbjct: 125269 ctttcacattgccgataaacacaccagatagcaggcaagtgtgtgacctcgaattgcttg 125210 Query: 354 ggacaacatcggttccct 371 |||| ||||| ||||||| Sbjct: 125209 ggaccacatcagttccct 125192 Score = 105 bits (53), Expect = 2e-19 Identities = 65/69 (94%) Strand = Plus / Minus Query: 608 acctctttaacaatgaatttcaatatatttgagaacttcccagtggcaaggacaccttct 667 |||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||| Sbjct: 124464 acctctttaacaataaatttcagtatatttgagaacttcccagtagcaaggacaccttct 124405 Query: 668 ggcttttca 676 |||||||| Sbjct: 124404 agcttttca 124396
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 168 bits (85), Expect = 2e-38 Identities = 193/229 (84%) Strand = Plus / Minus Query: 369 cctcgcaaggctgcatgccaaggatgcttataacagcactcacagcctcagccaagttct 428 |||| ||||||||||| |||||||| || || |||||||||||||||||||||||| ||| Sbjct: 6651423 cctcacaaggctgcataccaaggatactaatgacagcactcacagcctcagccaagctct 6651364 Query: 429 ccctaacaccaagtccatactcatcgacccgctcactttctggatccatgctttcccaag 488 | |||||||||||||||||||||||||| |||||||||||||| ||||| ||||||| | Sbjct: 6651363 ctctaacaccaagtccatactcatcgacacgctcactttctgggtccatattttcccagg 6651304 Query: 489 catttcggaagttcgaaacccccaccttcaacatgtaatcagcagaaataatttcaaaat 548 |||| | |||||| || || | ||| ||| |||||||||||| |||| |||||| | | Sbjct: 6651303 cattcctgaagttggagactgcaaccctcagcatgtaatcagccgaaacaatttccaggt 6651244 Query: 549 cttctagctgatactcatcctcaacaccgtcatcctcagcttcacctgt 597 |||| | ||| || |||||||| ||||| || || ||| |||| ||||| Sbjct: 6651243 cttcgatctggtattcatcctccacaccatcctcatcaacttcccctgt 6651195 Score = 107 bits (54), Expect = 5e-20 Identities = 132/158 (83%) Strand = Plus / Minus Query: 185 gcaacaatttcatggatcctgtcactgacctccggatcatctgatctgacagctagcttc 244 |||||||| || |||||| |||||||||| || ||||||||||| ||||| || |||||| Sbjct: 6651732 gcaacaatctcgtggatcttgtcactgacttcgggatcatctgacctgacggcaagcttc 6651673 Query: 245 atggccacttctttcggcccgctgattccaaatgatagtctcaccaaaactttcacatta 304 || |||||||| || |||||||| | |||||| ||||| || || | ||| || | | Sbjct: 6651672 atcgccacttccttgggcccgctcagtccaaacgatagcctgacaagaaccttggcgtcg 6651613 Query: 305 ccgatgaacacacctgaaagcaggcaagtgtgcgatct 342 |||||||||||||| || |||||||||||||||||||| Sbjct: 6651612 ccgatgaacacaccagacagcaggcaagtgtgcgatct 6651575 Score = 42.1 bits (21), Expect = 2.3 Identities = 57/69 (82%) Strand = Plus / Minus Query: 608 acctctttaacaatgaatttcaatatatttgagaacttcccagtggcaaggacaccttct 667 |||||||||||||| || |||| | |||||| || |||||||| ||| | ||| |||| Sbjct: 6650730 acctctttaacaataaacttcagcacatttgaaaatttcccagtagcaggaacatgttct 6650671 Query: 668 ggcttttca 676 ||||||||| Sbjct: 6650670 ggcttttca 6650662
>gb|AC104473.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1626B05, complete sequence Length = 127946 Score = 168 bits (85), Expect = 2e-38 Identities = 193/229 (84%) Strand = Plus / Minus Query: 369 cctcgcaaggctgcatgccaaggatgcttataacagcactcacagcctcagccaagttct 428 |||| ||||||||||| |||||||| || || |||||||||||||||||||||||| ||| Sbjct: 36971 cctcacaaggctgcataccaaggatactaatgacagcactcacagcctcagccaagctct 36912 Query: 429 ccctaacaccaagtccatactcatcgacccgctcactttctggatccatgctttcccaag 488 | |||||||||||||||||||||||||| |||||||||||||| ||||| ||||||| | Sbjct: 36911 ctctaacaccaagtccatactcatcgacacgctcactttctgggtccatattttcccagg 36852 Query: 489 catttcggaagttcgaaacccccaccttcaacatgtaatcagcagaaataatttcaaaat 548 |||| | |||||| || || | ||| ||| |||||||||||| |||| |||||| | | Sbjct: 36851 cattcctgaagttggagactgcaaccctcagcatgtaatcagccgaaacaatttccaggt 36792 Query: 549 cttctagctgatactcatcctcaacaccgtcatcctcagcttcacctgt 597 |||| | ||| || |||||||| ||||| || || ||| |||| ||||| Sbjct: 36791 cttcgatctggtattcatcctccacaccatcctcatcaacttcccctgt 36743 Score = 107 bits (54), Expect = 5e-20 Identities = 132/158 (83%) Strand = Plus / Minus Query: 185 gcaacaatttcatggatcctgtcactgacctccggatcatctgatctgacagctagcttc 244 |||||||| || |||||| |||||||||| || ||||||||||| ||||| || |||||| Sbjct: 37280 gcaacaatctcgtggatcttgtcactgacttcgggatcatctgacctgacggcaagcttc 37221 Query: 245 atggccacttctttcggcccgctgattccaaatgatagtctcaccaaaactttcacatta 304 || |||||||| || |||||||| | |||||| ||||| || || | ||| || | | Sbjct: 37220 atcgccacttccttgggcccgctcagtccaaacgatagcctgacaagaaccttggcgtcg 37161 Query: 305 ccgatgaacacacctgaaagcaggcaagtgtgcgatct 342 |||||||||||||| || |||||||||||||||||||| Sbjct: 37160 ccgatgaacacaccagacagcaggcaagtgtgcgatct 37123 Score = 42.1 bits (21), Expect = 2.3 Identities = 57/69 (82%) Strand = Plus / Minus Query: 608 acctctttaacaatgaatttcaatatatttgagaacttcccagtggcaaggacaccttct 667 |||||||||||||| || |||| | |||||| || |||||||| ||| | ||| |||| Sbjct: 36278 acctctttaacaataaacttcagcacatttgaaaatttcccagtagcaggaacatgttct 36219 Query: 668 ggcttttca 676 ||||||||| Sbjct: 36218 ggcttttca 36210
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 168 bits (85), Expect = 2e-38 Identities = 193/229 (84%) Strand = Plus / Minus Query: 369 cctcgcaaggctgcatgccaaggatgcttataacagcactcacagcctcagccaagttct 428 |||| ||||||||||| |||||||| || || |||||||||||||||||||||||| ||| Sbjct: 6650636 cctcacaaggctgcataccaaggatactaatgacagcactcacagcctcagccaagctct 6650577 Query: 429 ccctaacaccaagtccatactcatcgacccgctcactttctggatccatgctttcccaag 488 | |||||||||||||||||||||||||| |||||||||||||| ||||| ||||||| | Sbjct: 6650576 ctctaacaccaagtccatactcatcgacacgctcactttctgggtccatattttcccagg 6650517 Query: 489 catttcggaagttcgaaacccccaccttcaacatgtaatcagcagaaataatttcaaaat 548 |||| | |||||| || || | ||| ||| |||||||||||| |||| |||||| | | Sbjct: 6650516 cattcctgaagttggagactgcaaccctcagcatgtaatcagccgaaacaatttccaggt 6650457 Query: 549 cttctagctgatactcatcctcaacaccgtcatcctcagcttcacctgt 597 |||| | ||| || |||||||| ||||| || || ||| |||| ||||| Sbjct: 6650456 cttcgatctggtattcatcctccacaccatcctcatcaacttcccctgt 6650408 Score = 107 bits (54), Expect = 5e-20 Identities = 132/158 (83%) Strand = Plus / Minus Query: 185 gcaacaatttcatggatcctgtcactgacctccggatcatctgatctgacagctagcttc 244 |||||||| || |||||| |||||||||| || ||||||||||| ||||| || |||||| Sbjct: 6650945 gcaacaatctcgtggatcttgtcactgacttcgggatcatctgacctgacggcaagcttc 6650886 Query: 245 atggccacttctttcggcccgctgattccaaatgatagtctcaccaaaactttcacatta 304 || |||||||| || |||||||| | |||||| ||||| || || | ||| || | | Sbjct: 6650885 atcgccacttccttgggcccgctcagtccaaacgatagcctgacaagaaccttggcgtcg 6650826 Query: 305 ccgatgaacacacctgaaagcaggcaagtgtgcgatct 342 |||||||||||||| || |||||||||||||||||||| Sbjct: 6650825 ccgatgaacacaccagacagcaggcaagtgtgcgatct 6650788 Score = 42.1 bits (21), Expect = 2.3 Identities = 57/69 (82%) Strand = Plus / Minus Query: 608 acctctttaacaatgaatttcaatatatttgagaacttcccagtggcaaggacaccttct 667 |||||||||||||| || |||| | |||||| || |||||||| ||| | ||| |||| Sbjct: 6649943 acctctttaacaataaacttcagcacatttgaaaatttcccagtagcaggaacatgttct 6649884 Query: 668 ggcttttca 676 ||||||||| Sbjct: 6649883 ggcttttca 6649875
>gb|AY389774.1| Hyacinthus orientalis coatomer protein gamma subunit mRNA, partial cds Length = 871 Score = 125 bits (63), Expect = 2e-25 Identities = 231/287 (80%) Strand = Plus / Minus Query: 356 acaacatcggttccctcgcaaggctgcatgccaaggatgcttataacagcactcacagcc 415 ||||| || |||||||||||||||||||||||||||||| | | |||||| ||||||| Sbjct: 736 acaacttcagttccctcgcaaggctgcatgccaaggatgttaacgacagcattcacagcg 677 Query: 416 tcagccaagttctccctaacaccaagtccatactcatcgacccgctcactttctggatcc 475 ||| ||||| |||| || ||| |||||||| ||||| || || || || ||||| ||| Sbjct: 676 tcaaccaagctctctctggtaccgagtccatattcatcaacacgttcgctctctgggtcc 617 Query: 476 atgctttcccaagcatttcggaagttcgaaacccccaccttcaacatgtaatcagcagaa 535 || || |||||||||||| ||| || || || ||||| |||| || ||||||||| | Sbjct: 616 atactgtcccaagcatttttgaaattggatactcccactttcagcacgtaatcagctgcc 557 Query: 536 ataatttcaaaatcttctagctgatactcatcctcaacaccgtcatcctcagcttcacct 595 | | |||||| ||||||||||| || ||||| || ||||| ||||| || |||||||| Sbjct: 556 actacttcaaattcttctagctggtattcatcttcgacaccttcatcatctgcttcacca 497 Query: 596 gtggacgaatcaacctctttaacaatgaatttcaatatatttgagaa 642 || | | ||||||||||||||| ||||| ||||| || |||||||| Sbjct: 496 gtagccagatcaacctctttaacgatgaacttcaacatgtttgagaa 450
>gb|AY111369.1| Zea mays CL858_1 mRNA sequence Length = 1437 Score = 101 bits (51), Expect = 3e-18 Identities = 180/223 (80%) Strand = Plus / Minus Query: 368 ccctcgcaaggctgcatgccaaggatgcttataacagcactcacagcctcagccaagttc 427 ||||| || |||||||| |||||||| | || |||||| | |||||||||||||| | Sbjct: 1014 ccctcacacggctgcattccaaggatattaatgacagcattgacagcctcagccaaactt 955 Query: 428 tccctaacaccaagtccatactcatcgacccgctcactttctggatccatgctttcccaa 487 || ||||| || ||||||||||||||||| |||||||| ||||| ||||| ||||||| Sbjct: 954 tctctaaccccgagtccatactcatcgacacgctcactatctgggtccatattttcccag 895 Query: 488 gcatttcggaagttcgaaacccccaccttcaacatgtaatcagcagaaataatttcaaaa 547 || || | |||||| || || | ||| ||| ||| |||||||| |||| ||||||||| Sbjct: 894 gcgttcctgaagttggagacaacaaccctcagcatataatcagctgaaacaatttcaaag 835 Query: 548 tcttctagctgatactcatcctcaacaccgtcatcctcagctt 590 || |||| ||| || |||||||| ||||| || || ||||||| Sbjct: 834 tcctctaactggtattcatcctccacaccatcctcatcagctt 792 Score = 63.9 bits (32), Expect = 6e-07 Identities = 77/92 (83%) Strand = Plus / Minus Query: 188 acaatttcatggatcctgtcactgacctccggatcatctgatctgacagctagcttcatg 247 ||||| ||||| ||| | |||||||| || || ||||||||||| ||||||| ||||| Sbjct: 1194 acaatctcatgaatcttatcactgacttcagggtcatctgatctcacagctaatttcatt 1135 Query: 248 gccacttctttcggcccgctgattccaaatga 279 |||||||| || |||||||| | ||||||||| Sbjct: 1134 gccacttcgttgggcccgctcagtccaaatga 1103
>ref|NM_119610.2| Arabidopsis thaliana clathrin binding AT4G34450 mRNA, complete cds Length = 2969 Score = 54.0 bits (27), Expect = 6e-04 Identities = 102/127 (80%) Strand = Plus / Minus Query: 472 atccatgctttcccaagcatttcggaagttcgaaacccccaccttcaacatgtaatcagc 531 ||||||||||||||| ||||| | ||| || || || ||||| |||| ||||||||| | Sbjct: 2446 atccatgctttcccacgcattcctgaaattggagacacccactttcaccatgtaatctcc 2387 Query: 532 agaaataatttcaaaatcttctagctgatactcatcctcaacaccgtcatcctcagcttc 591 || | || |||| ||| |||||||| |||||||| || || || ||||| || ||||| Sbjct: 2386 agctacaacctcaagatcctctagctggtactcatcttctactccatcatcttctgcttc 2327 Query: 592 acctgtg 598 ||||||| Sbjct: 2326 acctgtg 2320
>emb|AL161585.2|ATCHRIV81 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 81 Length = 195921 Score = 54.0 bits (27), Expect = 6e-04 Identities = 102/127 (80%) Strand = Plus / Minus Query: 472 atccatgctttcccaagcatttcggaagttcgaaacccccaccttcaacatgtaatcagc 531 ||||||||||||||| ||||| | ||| || || || ||||| |||| ||||||||| | Sbjct: 122063 atccatgctttcccacgcattcctgaaattggagacacccactttcaccatgtaatctcc 122004 Query: 532 agaaataatttcaaaatcttctagctgatactcatcctcaacaccgtcatcctcagcttc 591 || | || |||| ||| |||||||| |||||||| || || || ||||| || ||||| Sbjct: 122003 agctacaacctcaagatcctctagctggtactcatcttctactccatcatcttctgcttc 121944 Query: 592 acctgtg 598 ||||||| Sbjct: 121943 acctgtg 121937
>emb|AL035521.1|ATF10M10 Arabidopsis thaliana DNA chromosome 4, BAC clone F10M10 (ESSA project) Length = 114367 Score = 54.0 bits (27), Expect = 6e-04 Identities = 102/127 (80%) Strand = Plus / Minus Query: 472 atccatgctttcccaagcatttcggaagttcgaaacccccaccttcaacatgtaatcagc 531 ||||||||||||||| ||||| | ||| || || || ||||| |||| ||||||||| | Sbjct: 113543 atccatgctttcccacgcattcctgaaattggagacacccactttcaccatgtaatctcc 113484 Query: 532 agaaataatttcaaaatcttctagctgatactcatcctcaacaccgtcatcctcagcttc 591 || | || |||| ||| |||||||| |||||||| || || || ||||| || ||||| Sbjct: 113483 agctacaacctcaagatcctctagctggtactcatcttctactccatcatcttctgcttc 113424 Query: 592 acctgtg 598 ||||||| Sbjct: 113423 acctgtg 113417
>emb|AL023094.2|ATT4L20 Arabidopsis thaliana DNA chromosome 4, BAC clone T4L20 (ESSA project) Length = 125502 Score = 54.0 bits (27), Expect = 6e-04 Identities = 102/127 (80%) Strand = Plus / Minus Query: 472 atccatgctttcccaagcatttcggaagttcgaaacccccaccttcaacatgtaatcagc 531 ||||||||||||||| ||||| | ||| || || || ||||| |||| ||||||||| | Sbjct: 12374 atccatgctttcccacgcattcctgaaattggagacacccactttcaccatgtaatctcc 12315 Query: 532 agaaataatttcaaaatcttctagctgatactcatcctcaacaccgtcatcctcagcttc 591 || | || |||| ||| |||||||| |||||||| || || || ||||| || ||||| Sbjct: 12314 agctacaacctcaagatcctctagctggtactcatcttctactccatcatcttctgcttc 12255 Query: 592 acctgtg 598 ||||||| Sbjct: 12254 acctgtg 12248
>dbj|AK221839.1| Arabidopsis thaliana mRNA for Nonclathrin coat protein gamma -like protein, partial cds, clone: RAFL22-03-D15 Length = 764 Score = 54.0 bits (27), Expect = 6e-04 Identities = 102/127 (80%) Strand = Plus / Minus Query: 472 atccatgctttcccaagcatttcggaagttcgaaacccccaccttcaacatgtaatcagc 531 ||||||||||||||| ||||| | ||| || || || ||||| |||| ||||||||| | Sbjct: 278 atccatgctttcccacgcattcctgaaattggagacacccactttcaccatgtaatctcc 219 Query: 532 agaaataatttcaaaatcttctagctgatactcatcctcaacaccgtcatcctcagcttc 591 || | || |||| ||| |||||||| |||||||| || || || ||||| || ||||| Sbjct: 218 agctacaacctcaagatcctctagctggtactcatcttctactccatcatcttctgcttc 159 Query: 592 acctgtg 598 ||||||| Sbjct: 158 acctgtg 152
>gb|AC134448.4| Mus musculus BAC clone RP24-186G11 from 3, complete sequence Length = 160223 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Minus Query: 616 aacaatgaatttcaatatattt 637 |||||||||||||||||||||| Sbjct: 55721 aacaatgaatttcaatatattt 55700
>gb|AC069427.10| Homo sapiens 3 BAC RP11-371I22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 133858 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 611 tctttaacaatgaatttcaat 631 ||||||||||||||||||||| Sbjct: 54844 tctttaacaatgaatttcaat 54824
>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete sequence Length = 4332241 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 529 agcagaaataatttcaaaatc 549 ||||||||||||||||||||| Sbjct: 3068169 agcagaaataatttcaaaatc 3068149
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 124 tggaaagccaaaacaacaaaa 144 ||||||||||||||||||||| Sbjct: 21750132 tggaaagccaaaacaacaaaa 21750112
>gb|AC083950.4| Homo sapiens BAC clone RP11-240P14 from 2, complete sequence Length = 115507 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 608 acctctttaacaatgaatttcaata 632 |||||||||||||| |||||||||| Sbjct: 10344 acctctttaacaataaatttcaata 10320
>emb|AL929109.5| Zebrafish DNA sequence from clone CH211-134D6, complete sequence Length = 197991 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 518 aacatgtaatcagcagaaataattt 542 |||||||||||| |||||||||||| Sbjct: 105450 aacatgtaatcatcagaaataattt 105426
>dbj|AP004665.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0429B05 Length = 155024 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 124 tggaaagccaaaacaacaaaa 144 ||||||||||||||||||||| Sbjct: 29715 tggaaagccaaaacaacaaaa 29695
>dbj|AP004564.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0479C12 Length = 136799 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 124 tggaaagccaaaacaacaaaa 144 ||||||||||||||||||||| Sbjct: 117702 tggaaagccaaaacaacaaaa 117682
>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome I, complete sequence Length = 4277185 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 529 agcagaaataatttcaaaatc 549 ||||||||||||||||||||| Sbjct: 1228290 agcagaaataatttcaaaatc 1228310
>dbj|AP006864.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT18I21, TM1144, complete sequence Length = 135217 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 133 aaaacaacaaaaaggtcaaccaaaa 157 |||||||||||||||||||| |||| Sbjct: 66692 aaaacaacaaaaaggtcaacaaaaa 66716
>gb|AC129981.9| Mus musculus chromosome 5, clone RP23-114I13, complete sequence Length = 198469 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 caaatgatagtctcaccaaa 292 |||||||||||||||||||| Sbjct: 134144 caaatgatagtctcaccaaa 134163
>gb|AC008092.4| Drosophila melanogaster clone BACR22F22, complete sequence Length = 175045 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 529 agcagaaataatttcaaaat 548 |||||||||||||||||||| Sbjct: 145560 agcagaaataatttcaaaat 145541
>ref|XM_368522.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein (MG00722.4) partial mRNA Length = 2967 Score = 40.1 bits (20), Expect = 9.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 564 catcctcaacaccgtcatcctcagcttc 591 |||||||||| ||| ||||||||||||| Sbjct: 585 catcctcaacgccgccatcctcagcttc 612
>gb|AC135568.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0078F08, complete sequence Length = 165440 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 618 caatgaatttcaatatattt 637 |||||||||||||||||||| Sbjct: 110271 caatgaatttcaatatattt 110290
>gb|AY544051.1| Salmo salar clone Rsa473 microsatellite sequence Length = 1015 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 368 ccctcgcaaggctgcatgcc 387 |||||||||||||||||||| Sbjct: 252 ccctcgcaaggctgcatgcc 271
>gb|AC124362.3| Mus musculus BAC clone RP24-528N1 from chromosome 13, complete sequence Length = 173382 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 611 tctttaacaatgaatttcaa 630 |||||||||||||||||||| Sbjct: 1903 tctttaacaatgaatttcaa 1922
>gb|AC116324.6| Mus musculus BAC clone RP23-282P1 from 16, complete sequence Length = 200774 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 282 gtctcaccaaaactttcaca 301 |||||||||||||||||||| Sbjct: 141172 gtctcaccaaaactttcaca 141153
>gb|AC146746.15| Medicago truncatula clone mth2-108p9, complete sequence Length = 95118 Score = 40.1 bits (20), Expect = 9.2 Identities = 47/56 (83%) Strand = Plus / Minus Query: 473 tccatgctttcccaagcatttcggaagttcgaaacccccaccttcaacatgtaatc 528 |||||||||||||| || || | ||| || || |||||||| ||||| |||||||| Sbjct: 29653 tccatgctttcccatgcgttcctgaaattagacacccccactttcaatatgtaatc 29598
>emb|AL591591.6| Human DNA sequence from clone RP11-450E21 on chromosome X, complete sequence Length = 104117 Score = 40.1 bits (20), Expect = 9.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 623 aatttcaatatatttgagaacttcccag 650 |||||||||||||||| ||| ||||||| Sbjct: 102091 aatttcaatatatttgtgaatttcccag 102118
>emb|AL162613.22| Human DNA sequence from clone RP11-182C2 on chromosome 10 Contains the 5' end of the ADD3 gene for adducin 3 (gamma) and a CpG island, complete sequence Length = 79949 Score = 40.1 bits (20), Expect = 9.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 515 ttcaacatgtaatcagcagaaataattt 542 |||||||||||||||||| ||| ||||| Sbjct: 36842 ttcaacatgtaatcagcataaaaaattt 36869
>gb|AC126722.7| Rattus norvegicus 4 BAC CH230-5L13 (Children's Hospital Oakland Research Institute) complete sequence Length = 217690 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 aaaacaacaaaaaggtcaac 152 |||||||||||||||||||| Sbjct: 30996 aaaacaacaaaaaggtcaac 31015
>emb|BX321857.1| Nitrosomonas europaea ATCC 19718, complete genome; segment 2/10 Length = 313050 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 aagccaaaacaacaaaaagg 147 |||||||||||||||||||| Sbjct: 565 aagccaaaacaacaaaaagg 584
>emb|BX294445.10| Zebrafish DNA sequence from clone DKEY-265K11 in linkage group 1, complete sequence Length = 159780 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 312 acacacctgaaagcaggcaa 331 |||||||||||||||||||| Sbjct: 98857 acacacctgaaagcaggcaa 98876
>gb|BC091386.1| Rattus norvegicus hypothetical protein LOC310665, mRNA (cDNA clone MGC:109471 IMAGE:7321358), complete cds Length = 2054 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 aacagcactcacagcctcag 419 |||||||||||||||||||| Sbjct: 950 aacagcactcacagcctcag 931
>gb|AC099065.2| Homo sapiens chromosome 1 clone RP11-105I12, complete sequence Length = 181253 Score = 40.1 bits (20), Expect = 9.2 Identities = 32/36 (88%) Strand = Plus / Plus Query: 123 atggaaagccaaaacaacaaaaaggtcaaccaaaaa 158 ||||||||| |||| || |||||||||||| ||||| Sbjct: 156807 atggaaagcaaaaaaaaaaaaaaggtcaactaaaaa 156842
>gb|AC015845.8| Homo sapiens chromosome 17, clone RP11-343K8, complete sequence Length = 191957 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 538 aatttcaaaatcttctagct 557 |||||||||||||||||||| Sbjct: 54489 aatttcaaaatcttctagct 54508
>gb|AC099064.2| Homo sapiens chromosome 1 clone RP4-754K5, complete sequence Length = 135547 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 534 aaataatttcaaaatcttct 553 |||||||||||||||||||| Sbjct: 106573 aaataatttcaaaatcttct 106554
>gb|AC099794.2| Homo sapiens chromosome 1 clone RP4-771M4, complete sequence Length = 134341 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 527 tcagcagaaataatttcaaa 546 |||||||||||||||||||| Sbjct: 104778 tcagcagaaataatttcaaa 104797
>gb|AC008442.6| Homo sapiens chromosome 5 clone CTC-331P4, complete sequence Length = 171937 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 532 agaaataatttcaaaatctt 551 |||||||||||||||||||| Sbjct: 19841 agaaataatttcaaaatctt 19860
>ref|NM_001025118.1| Rattus norvegicus hypothetical protein LOC310665 (LOC310665), mRNA Length = 2054 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 aacagcactcacagcctcag 419 |||||||||||||||||||| Sbjct: 950 aacagcactcacagcctcag 931
>gb|DQ067593.1| Cocksfoot streak virus isolate UK-1-04 GHCP619C HC-Pro protein (HC-Pro) gene, partial cds Length = 1371 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 gcgatctcgaattgttttgg 355 |||||||||||||||||||| Sbjct: 1110 gcgatctcgaattgttttgg 1091
>gb|DQ067592.1| Cocksfoot streak virus isolate UK-1-04 GHCP619B HC-Pro protein (HC-Pro) gene, partial cds Length = 1371 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 gcgatctcgaattgttttgg 355 |||||||||||||||||||| Sbjct: 1110 gcgatctcgaattgttttgg 1091
>gb|DQ067591.1| Cocksfoot streak virus isolate UK-1-04 GHCP619A HC-Pro protein (HC-Pro) gene, partial cds Length = 1371 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 gcgatctcgaattgttttgg 355 |||||||||||||||||||| Sbjct: 1110 gcgatctcgaattgttttgg 1091
>dbj|AK031002.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched library, clone:5830485N12 product:similar to Protein C20orf24 (Rab5-interacting protein) (RIP5) (PNAS-11) [Homo sapiens], full insert sequence Length = 2005 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 ccaaaacaacaaaaaggtca 150 |||||||||||||||||||| Sbjct: 906 ccaaaacaacaaaaaggtca 887
>emb|AL929238.22| Mouse DNA sequence from clone RP23-480I16 on chromosome 2, complete sequence Length = 174226 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 agaaaaccaacttacacata 79 |||||||||||||||||||| Sbjct: 14949 agaaaaccaacttacacata 14968
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 618 caatgaatttcaatatattt 637 |||||||||||||||||||| Sbjct: 18530956 caatgaatttcaatatattt 18530975
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 9.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 615 taacaatgaatttcaatatatttgagaa 642 ||||||| ||||| |||||||||||||| Sbjct: 24924509 taacaattaattttaatatatttgagaa 24924482 Score = 40.1 bits (20), Expect = 9.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 615 taacaatgaatttcaatatatttgagaa 642 ||||||| ||||| |||||||||||||| Sbjct: 15574305 taacaattaattttaatatatttgagaa 15574332
>gb|AY235127.1| Meleagris gallopavo clone MNT-158 microsatellite sequence Length = 1162 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 525 aatcagcagaaataatttcaaaat 548 ||||||||||||| |||||||||| Sbjct: 935 aatcagcagaaatcatttcaaaat 958
>emb|BX248130.8| Zebrafish DNA sequence from clone CH211-236E5 in linkage group 1, complete sequence Length = 183058 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 312 acacacctgaaagcaggcaa 331 |||||||||||||||||||| Sbjct: 145464 acacacctgaaagcaggcaa 145483
>gb|AC008313.3|AC008313 Drosophila melanogaster, chromosome 3R, region 84D-84E, BAC clone BACR11D12, complete sequence Length = 189596 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 529 agcagaaataatttcaaaat 548 |||||||||||||||||||| Sbjct: 25855 agcagaaataatttcaaaat 25836
>gb|AC068129.6| Homo sapiens BAC clone RP11-619F9 from 2, complete sequence Length = 150646 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 aacaacaaaaaggtcaacca 154 |||||||||||||||||||| Sbjct: 44400 aacaacaaaaaggtcaacca 44419
>dbj|AP003541.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0530H05 Length = 145952 Score = 40.1 bits (20), Expect = 9.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 615 taacaatgaatttcaatatatttgagaa 642 ||||||| ||||| |||||||||||||| Sbjct: 19064 taacaattaattttaatatatttgagaa 19037
>dbj|AP004737.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0072A21 Length = 158287 Score = 40.1 bits (20), Expect = 9.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 615 taacaatgaatttcaatatatttgagaa 642 ||||||| ||||| |||||||||||||| Sbjct: 135592 taacaattaattttaatatatttgagaa 135565
>dbj|AP003528.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0633D04 Length = 159636 Score = 40.1 bits (20), Expect = 9.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 615 taacaatgaatttcaatatatttgagaa 642 ||||||| ||||| |||||||||||||| Sbjct: 63638 taacaattaattttaatatatttgagaa 63665
>emb|BX005450.9| Zebrafish DNA sequence from clone CH211-150O23, complete sequence Length = 164218 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 ataattaatcgaaatccctt 109 |||||||||||||||||||| Sbjct: 160378 ataattaatcgaaatccctt 160359
>emb|BX119907.8| Zebrafish DNA sequence from clone CH211-208D14 in linkage group 6, complete sequence Length = 181060 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 aaaacaacaaaaaggtcaac 152 |||||||||||||||||||| Sbjct: 24478 aaaacaacaaaaaggtcaac 24459
>dbj|AP005325.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0710F09 Length = 198867 Score = 40.1 bits (20), Expect = 9.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 615 taacaatgaatttcaatatatttgagaa 642 ||||||| ||||| |||||||||||||| Sbjct: 50740 taacaattaattttaatatatttgagaa 50767
>emb|AL806515.7| Mouse DNA sequence from clone RP23-434M18 on chromosome X, complete sequence Length = 125394 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 caagaatgatgctgcaacaa 43 |||||||||||||||||||| Sbjct: 115520 caagaatgatgctgcaacaa 115539
>emb|CR854912.18| Zebrafish DNA sequence from clone DKEY-39O12 in linkage group 6, complete sequence Length = 170067 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 aaaacaacaaaaaggtcaac 152 |||||||||||||||||||| Sbjct: 11246 aaaacaacaaaaaggtcaac 11265
>emb|BX914207.15| Zebrafish DNA sequence from clone DKEY-158P11 in linkage group 4, complete sequence Length = 92140 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 ataacagcactcacagcctc 417 |||||||||||||||||||| Sbjct: 74498 ataacagcactcacagcctc 74517
>emb|CT025771.7| Zebrafish DNA sequence from clone DKEY-20I10 in linkage group 13, complete sequence Length = 190607 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 ataacagcactcacagcctc 417 |||||||||||||||||||| Sbjct: 25665 ataacagcactcacagcctc 25684
>gb|AE003676.4| Drosophila melanogaster chromosome 3R, section 14 of 118 of the complete sequence Length = 267607 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 529 agcagaaataatttcaaaat 548 |||||||||||||||||||| Sbjct: 102394 agcagaaataatttcaaaat 102375
>gb|AY449460.1| Oikopleura dioica clone BACOIKO004 7xk22, complete sequence Length = 131867 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 529 agcagaaataatttcaaaat 548 |||||||||||||||||||| Sbjct: 101703 agcagaaataatttcaaaat 101684
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 618 caatgaatttcaatatattt 637 |||||||||||||||||||| Sbjct: 18690357 caatgaatttcaatatattt 18690376
>emb|AL935150.10| Mouse DNA sequence from clone RP24-482A24 on chromosome 2, complete sequence Length = 163240 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 ccaaaacaacaaaaaggtca 150 |||||||||||||||||||| Sbjct: 91724 ccaaaacaacaaaaaggtca 91705
>gb|AC140345.3| Mus musculus BAC clone RP24-66E22 from 13, complete sequence Length = 238541 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 611 tctttaacaatgaatttcaa 630 |||||||||||||||||||| Sbjct: 54756 tctttaacaatgaatttcaa 54737
>emb|AL845468.4| Mouse DNA sequence from clone RP23-67E6 on chromosome 2, complete sequence Length = 217609 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 caagaatgatgctgcaacaa 43 |||||||||||||||||||| Sbjct: 48422 caagaatgatgctgcaacaa 48441
>emb|AL772386.4| Mouse DNA sequence from clone RP23-89G22 on chromosome 15, complete sequence Length = 149807 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 534 aaataatttcaaaatcttct 553 |||||||||||||||||||| Sbjct: 59109 aaataatttcaaaatcttct 59128 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,258,693 Number of Sequences: 3902068 Number of extensions: 7258693 Number of successful extensions: 150215 Number of sequences better than 10.0: 77 Number of HSP's better than 10.0 without gapping: 79 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 149610 Number of HSP's gapped (non-prelim): 599 length of query: 676 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 653 effective length of database: 17,143,297,704 effective search space: 11194573400712 effective search space used: 11194573400712 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
