ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags23d11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_466538.1| Oryza sativa (japonica cultivar-group), mRNA 321 2e-84
2dbj|AK072562.1| Oryza sativa (japonica cultivar-group) cDNA clon... 321 2e-84
3gb|AY108961.1| Zea mays PCO149409 mRNA sequence 293 4e-76
4gb|AY112581.1| Zea mays CL11475_1 mRNA sequence 111 3e-21
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 109 1e-20
6dbj|AP004092.3| Oryza sativa (japonica cultivar-group) genomic D... 109 1e-20
7ref|NM_120962.1| Arabidopsis thaliana unknown protein AT5G09260 ... 62 3e-06
8gb|BT010522.1| Arabidopsis thaliana At5g09260 gene, complete cds 62 3e-06
9dbj|AK175654.1| Arabidopsis thaliana mRNA, complete cds, clone: ... 62 3e-06
10emb|AL590346.1|ATT2K12 Arabidopsis thaliana DNA chromosome 5, BA... 58 4e-05
11emb|AL391712.1|ATT5E8 Arabidopsis thaliana DNA chromosome 5, BAC... 58 4e-05
12emb|BX833306.1|CNS09YZ9 Arabidopsis thaliana Full-length cDNA Co... 54 6e-04
13emb|BX831905.1|CNS09ZWG Arabidopsis thaliana Full-length cDNA Co... 48 0.039
14ref|NM_012972.1| Rattus norvegicus potassium voltage-gated chann... 44 0.61
15ref|XM_710688.1| Candida albicans SC5314 hypothetical protein (C... 44 0.61
16gb|AC146748.16| Medicago truncatula clone mth2-65k8, complete se... 44 0.61
17gb|M27158.1|RATKV1AA Rat potassium channel-Kv1 gene, complete cds 44 0.61
18ref|XM_445951.1| Candida glabrata CBS138, CAGL0E06028g partial mRNA 42 2.4
19emb|CR380951.1| Candida glabrata strain CBS138 chromosome E comp... 42 2.4
20gb|BC090116.1| Xenopus tropicalis cDNA clone IMAGE:6988471, cont... 42 2.4
21gb|AE000520.1| Treponema pallidum subsp. pallidum str. Nichols c... 42 2.4
22ref|XM_363762.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 9.6
23gb|BC021787.1| Mus musculus potassium voltage-gated channel, sha... 40 9.6
24gb|AC142267.3| Mus musculus BAC clone RP24-131K10 from chromosom... 40 9.6
25emb|CR936364.7| M.truncatula DNA sequence from clone MTH2-193I1 ... 40 9.6
26gb|AC125315.4| Mus musculus BAC clone RP24-370B21 from chromosom... 40 9.6
27gb|AC121773.3| Mus musculus BAC clone RP23-349P14 from chromosom... 40 9.6
28gb|AC122312.3| Mus musculus BAC clone RP23-298K16 from 19, compl... 40 9.6
29gb|AC004870.2| Homo sapiens PAC clone RP4-739M23 from 7, complet... 40 9.6
30emb|AL391903.15| Human DNA sequence from clone RP1-229K20 on chr... 40 9.6
31emb|CR378665.1| Photobacterium profundum SS9; segment 3/12 40 9.6
32gb|BC095619.1| Danio rerio zgc:111960, mRNA (cDNA clone MGC:1119... 40 9.6
33gb|AC016017.14| Mus Musculus Strain C57BL6/J Chromosome 6 BAC Cl... 40 9.6
34gb|AC010406.7| Homo sapiens chromosome 5 clone CTD-2154H6, compl... 40 9.6
35dbj|AK146843.1| Mus musculus 17 days embryo stomach cDNA, RIKEN ... 40 9.6
36gb|AF302768.1|AF302768 Mus musculus potassium voltage-gated chan... 40 9.6
37ref|NM_001020634.1| Danio rerio zgc:111960 (zgc:111960), mRNA 40 9.6
38gb|AC008280.4| Homo sapiens BAC clone RP11-477N3 from 2, complet... 40 9.6
39gb|AC149900.2| Xenopus tropicalis clone ISB-357K7, complete sequ... 40 9.6
40gb|AC010423.8| Homo sapiens chromosome 5 clone CTD-2193G5, compl... 40 9.6
41gb|AC160057.2| Pan troglodytes BAC clone CH251-416M4 from chromo... 40 9.6
42gb|AC154106.2| Mus musculus BAC clone RP24-312B8 from Y, complet... 40 9.6
43gb|AE015450.1| Mycoplasma gallisepticum strain R complete genome 40 9.6
44gb|AF108659.1|AF108659 Mus musculus ventricular potassium channe... 40 9.6
45gb|AC079438.30| Mus musculus strain C57BL/6J chromosome 6 clone ... 40 9.6
46emb|CR936258.1| Natronomonas pharaonis DSM 2160 plasmid PL131 co... 40 9.6
47ref|NM_145983.1| Mus musculus potassium voltage-gated channel, s... 40 9.6
48gb|AC170870.2| Mus musculus BAC clone RP24-303O21 from chromosom... 40 9.6
49gb|L22218.1|MUSKCHANN Mus musculus cardiac KV1.5 delayed rectifi... 40 9.6 
>ref|XM_466538.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1000

 Score =  321 bits (162), Expect = 2e-84
 Identities = 326/380 (85%), Gaps = 3/380 (0%)
 Strand = Plus / Minus

                                                                       
Query: 316 ctatgcaggtagtggctcttccaagacttttgttttttctgtagcttcaggcctctctgg 375
           |||||||||||| || |||||||| |||||||||||||||| |||||| || ||||||||
Sbjct: 835 ctatgcaggtaggggttcttccaaaacttttgttttttctgcagcttctggtctctctgg 776

                                                                       
Query: 376 cgctttagtcggtacatcaggaagctcaataacatcatcaatgtcttcagctggagcttc 435
            || ||||| ||||||||||||||||||||||| || ||||||||||| ||   ||| ||
Sbjct: 775 tgccttagtgggtacatcaggaagctcaataacctcgtcaatgtcttctgc---agcctc 719

                                                                       
Query: 436 agtgtaagccgctgctttaggtttcttttcaggttgtacttcagtaacgggagcatccgg 495
           ||||  ||| | || ||  | |||||  |||||  ||||||||||||| |||||||| ||
Sbjct: 718 agtgacagcaggtgtttctgatttctcctcaggccgtacttcagtaactggagcatctgg 659

                                                                       
Query: 496 cagagactcaagtgcaagctcagcttccaagttgtcgaattcagccatgacagcctcctc 555
            ||||||||||  |||||||  ||||||||||| || ||||||||||| |||||||||||
Sbjct: 658 tagagactcaacggcaagctgtgcttccaagttctcaaattcagccataacagcctcctc 599

                                                                       
Query: 556 atcctcagcagatagttgttcgcccagagcggcatttatttcatcctgataagccttggc 615
           ||||||||||||||| || || |||||||| |||||||| ||||| || |||||||||||
Sbjct: 598 atcctcagcagatagctgctcacccagagcagcatttatctcatcttggtaagccttggc 539

                                                                       
Query: 616 ctcagctgtgtcatccattaacttttggacatcgtcgatgttaatctcactctgtataga 675
           |||||||||||| ||||| |||||||||||||| || || || |||||| |||| |||||
Sbjct: 538 ctcagctgtgtcgtccatcaacttttggacatcatcaatatttatctcattctggataga 479

                               
Query: 676 cttaagggcagcatttccag 695
           |||||| |||||||||||||
Sbjct: 478 cttaagagcagcatttccag 459
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>dbj|AK072562.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023132G14, full
           insert sequence
          Length = 1000

 Score =  321 bits (162), Expect = 2e-84
 Identities = 326/380 (85%), Gaps = 3/380 (0%)
 Strand = Plus / Minus

                                                                       
Query: 316 ctatgcaggtagtggctcttccaagacttttgttttttctgtagcttcaggcctctctgg 375
           |||||||||||| || |||||||| |||||||||||||||| |||||| || ||||||||
Sbjct: 835 ctatgcaggtaggggttcttccaaaacttttgttttttctgcagcttctggtctctctgg 776

                                                                       
Query: 376 cgctttagtcggtacatcaggaagctcaataacatcatcaatgtcttcagctggagcttc 435
            || ||||| ||||||||||||||||||||||| || ||||||||||| ||   ||| ||
Sbjct: 775 tgccttagtgggtacatcaggaagctcaataacctcgtcaatgtcttctgc---agcctc 719

                                                                       
Query: 436 agtgtaagccgctgctttaggtttcttttcaggttgtacttcagtaacgggagcatccgg 495
           ||||  ||| | || ||  | |||||  |||||  ||||||||||||| |||||||| ||
Sbjct: 718 agtgacagcaggtgtttctgatttctcctcaggccgtacttcagtaactggagcatctgg 659

                                                                       
Query: 496 cagagactcaagtgcaagctcagcttccaagttgtcgaattcagccatgacagcctcctc 555
            ||||||||||  |||||||  ||||||||||| || ||||||||||| |||||||||||
Sbjct: 658 tagagactcaacggcaagctgtgcttccaagttctcaaattcagccataacagcctcctc 599

                                                                       
Query: 556 atcctcagcagatagttgttcgcccagagcggcatttatttcatcctgataagccttggc 615
           ||||||||||||||| || || |||||||| |||||||| ||||| || |||||||||||
Sbjct: 598 atcctcagcagatagctgctcacccagagcagcatttatctcatcttggtaagccttggc 539

                                                                       
Query: 616 ctcagctgtgtcatccattaacttttggacatcgtcgatgttaatctcactctgtataga 675
           |||||||||||| ||||| |||||||||||||| || || || |||||| |||| |||||
Sbjct: 538 ctcagctgtgtcgtccatcaacttttggacatcatcaatatttatctcattctggataga 479

                               
Query: 676 cttaagggcagcatttccag 695
           |||||| |||||||||||||
Sbjct: 478 cttaagagcagcatttccag 459
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>gb|AY108961.1| Zea mays PCO149409 mRNA sequence
          Length = 1302

 Score =  293 bits (148), Expect = 4e-76
 Identities = 338/400 (84%), Gaps = 1/400 (0%)
 Strand = Plus / Minus

                                                                       
Query: 297 ttcagctcagctcca-ccagctatgcaggtagtggctcttccaagacttttgttttttct 355
           |||| |||||||||| |||  ||||||||||| ||||| ||||| |||||  ||||||||
Sbjct: 862 ttcatctcagctccatccacttatgcaggtagcggctcctccaaaactttgtttttttct 803

                                                                       
Query: 356 gtagcttcaggcctctctggcgctttagtcggtacatcaggaagctcaataacatcatca 415
           | ||||||||||||||||||| |||| || || |||||||||||||||||||| ||||| 
Sbjct: 802 ggagcttcaggcctctctggcactttcgtaggcacatcaggaagctcaataacgtcatcg 743

                                                                       
Query: 416 atgtcttcagctggagcttcagtgtaagccgctgctttaggtttcttttcaggttgtact 475
           ||||| ||||  | |||||| |||| |||||  ||||| | ||||| ||||||   ||||
Sbjct: 742 atgtcctcaggagcagcttctgtgtcagccggagctttcgttttctcttcaggccttact 683

                                                                       
Query: 476 tcagtaacgggagcatccggcagagactcaagtgcaagctcagcttccaagttgtcgaat 535
           || ||| | ||||| || |||| ||||||||  ||||||| ||||||||| || || || 
Sbjct: 682 tcggtagcaggagcgtctggcaaagactcaacggcaagctgagcttccaaattttcaaac 623

                                                                       
Query: 536 tcagccatgacagcctcctcatcctcagcagatagttgttcgcccagagcggcatttatt 595
           || ||||||||||| || ||||||||||| || || || ||||||||| | |||||||||
Sbjct: 622 tcggccatgacagcttcttcatcctcagctgaaagctgctcgcccagaacagcatttatt 563

                                                                       
Query: 596 tcatcctgataagccttggcctcagctgtgtcatccattaacttttggacatcgtcgatg 655
           ||||| ||||||||||| ||||| |||||||||||||| | |||||||||||| || |||
Sbjct: 562 tcatcttgataagccttagcctcggctgtgtcatccatcagcttttggacatcatcaatg 503

                                                   
Query: 656 ttaatctcactctgtatagacttaagggcagcatttccag 695
           || |||||| ||||||||||||| ||||||||||||||||
Sbjct: 502 tttatctcattctgtatagacttcagggcagcatttccag 463
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>gb|AY112581.1| Zea mays CL11475_1 mRNA sequence
          Length = 444

 Score =  111 bits (56), Expect = 3e-21
 Identities = 200/248 (80%)
 Strand = Plus / Plus

                                                                       
Query: 358 agcttcaggcctctctggcgctttagtcggtacatcaggaagctcaataacatcatcaat 417
           ||||||||||||||||||||||||  | || |||||||| ||||||||| | ||||| ||
Sbjct: 197 agcttcaggcctctctggcgctttcataggcacatcagggagctcaatagcctcatctat 256

                                                                       
Query: 418 gtcttcagctggagcttcagtgtaagccgctgctttaggtttcttttcaggttgtacttc 477
           ||| ||||    |||||| |||| |||||  |||||   ||||| |||||||  ||||||
Sbjct: 257 gtcctcaggcacagcttctgtgtcagccggagctttcattttctcttcaggtcttacttc 316

                                                                       
Query: 478 agtaacgggagcatccggcagagactcaagtgcaagctcagcttccaagttgtcgaattc 537
           |||||| ||||  || |||| |||||| |  ||||||| |||||| | ||| || || ||
Sbjct: 317 agtaacaggagtgtctggcaaagactcgacggcaagctgagcttctaggttttcaaactc 376

                                                                       
Query: 538 agccatgacagcctcctcatcctcagcagatagttgttcgcccagagcggcatttatttc 597
           |||||| ||||| || ||||||||||| || || || || |||||| | |||||||||||
Sbjct: 377 agccataacagcttcttcatcctcagccgagagctgctcacccagaacagcatttatttc 436

                   
Query: 598 atcctgat 605
           ||| ||||
Sbjct: 437 atcttgat 444
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  109 bits (55), Expect = 1e-20
 Identities = 82/91 (90%)
 Strand = Plus / Plus

                                                                            
Query: 605      taagccttggcctcagctgtgtcatccattaacttttggacatcgtcgatgttaatctca 664
                ||||||||||||||||||||||| ||||| |||||||||||||| || || || ||||||
Sbjct: 23180502 taagccttggcctcagctgtgtcgtccatcaacttttggacatcatcaatatttatctca 23180561

                                               
Query: 665      ctctgtatagacttaagggcagcatttccag 695
                 |||| ||||||||||| |||||||||||||
Sbjct: 23180562 ttctggatagacttaagagcagcatttccag 23180592



 Score =  103 bits (52), Expect = 8e-19
 Identities = 144/174 (82%), Gaps = 3/174 (1%)
 Strand = Plus / Plus

                                                                            
Query: 342      cttttgttttttctgtagcttcaggcctctctggcgctttagtcggtacatcaggaagct 401
                ||||||||||||||| |||||| || |||||||| || ||||| ||||||||||||||||
Sbjct: 23179529 cttttgttttttctgcagcttctggtctctctggtgccttagtgggtacatcaggaagct 23179588

                                                                            
Query: 402      caataacatcatcaatgtcttcagctggagcttcagtgtaagccgctgctttaggtttct 461
                ||||||| || ||||||||||   ||| ||| ||||||  ||| | || ||  | |||||
Sbjct: 23179589 caataacctcgtcaatgtctt---ctgcagcctcagtgacagcaggtgtttctgatttct 23179645

                                                                      
Query: 462      tttcaggttgtacttcagtaacgggagcatccggcagagactcaagtgcaagct 515
                  |||||  ||||||||||||| |||||||| || ||||||||||  |||||||
Sbjct: 23179646 cctcaggccgtacttcagtaactggagcatctggtagagactcaacggcaagct 23179699



 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 70/77 (90%)
 Strand = Plus / Plus

                                                                            
Query: 518      gcttccaagttgtcgaattcagccatgacagcctcctcatcctcagcagatagttgttcg 577
                ||||||||||| || ||||||||||| |||||||||||||||||||||||||| || || 
Sbjct: 23179840 gcttccaagttctcaaattcagccataacagcctcctcatcctcagcagatagctgctca 23179899

                                 
Query: 578      cccagagcggcatttat 594
                |||||||| ||||||||
Sbjct: 23179900 cccagagcagcatttat 23179916



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                   
Query: 238      tacaatcaaatggcagatattttacagctcctgca 272
                |||||| |||||||||||| |||||| ||||||||
Sbjct: 23179344 tacaatgaaatggcagataatttacaactcctgca 23179378
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>dbj|AP004092.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1568_B05
          Length = 115325

 Score =  109 bits (55), Expect = 1e-20
 Identities = 82/91 (90%)
 Strand = Plus / Plus

                                                                         
Query: 605   taagccttggcctcagctgtgtcatccattaacttttggacatcgtcgatgttaatctca 664
             ||||||||||||||||||||||| ||||| |||||||||||||| || || || ||||||
Sbjct: 37733 taagccttggcctcagctgtgtcgtccatcaacttttggacatcatcaatatttatctca 37792

                                            
Query: 665   ctctgtatagacttaagggcagcatttccag 695
              |||| ||||||||||| |||||||||||||
Sbjct: 37793 ttctggatagacttaagagcagcatttccag 37823



 Score =  103 bits (52), Expect = 8e-19
 Identities = 144/174 (82%), Gaps = 3/174 (1%)
 Strand = Plus / Plus

                                                                         
Query: 342   cttttgttttttctgtagcttcaggcctctctggcgctttagtcggtacatcaggaagct 401
             ||||||||||||||| |||||| || |||||||| || ||||| ||||||||||||||||
Sbjct: 36760 cttttgttttttctgcagcttctggtctctctggtgccttagtgggtacatcaggaagct 36819

                                                                         
Query: 402   caataacatcatcaatgtcttcagctggagcttcagtgtaagccgctgctttaggtttct 461
             ||||||| || ||||||||||   ||| ||| ||||||  ||| | || ||  | |||||
Sbjct: 36820 caataacctcgtcaatgtctt---ctgcagcctcagtgacagcaggtgtttctgatttct 36876

                                                                   
Query: 462   tttcaggttgtacttcagtaacgggagcatccggcagagactcaagtgcaagct 515
               |||||  ||||||||||||| |||||||| || ||||||||||  |||||||
Sbjct: 36877 cctcaggccgtacttcagtaactggagcatctggtagagactcaacggcaagct 36930



 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 70/77 (90%)
 Strand = Plus / Plus

                                                                         
Query: 518   gcttccaagttgtcgaattcagccatgacagcctcctcatcctcagcagatagttgttcg 577
             ||||||||||| || ||||||||||| |||||||||||||||||||||||||| || || 
Sbjct: 37071 gcttccaagttctcaaattcagccataacagcctcctcatcctcagcagatagctgctca 37130

                              
Query: 578   cccagagcggcatttat 594
             |||||||| ||||||||
Sbjct: 37131 cccagagcagcatttat 37147



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                
Query: 238   tacaatcaaatggcagatattttacagctcctgca 272
             |||||| |||||||||||| |||||| ||||||||
Sbjct: 36575 tacaatgaaatggcagataatttacaactcctgca 36609
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>ref|NM_120962.1| Arabidopsis thaliana unknown protein AT5G09260 mRNA, complete cds
          Length = 651

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                  
Query: 595 ttcatcctgataagccttggcctcagctgtgtcatccat 633
           |||||||||||||||||||||||| || |||||||||||
Sbjct: 411 ttcatcctgataagccttggcctcggcagtgtcatccat 373
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>gb|BT010522.1| Arabidopsis thaliana At5g09260 gene, complete cds
          Length = 651

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                  
Query: 595 ttcatcctgataagccttggcctcagctgtgtcatccat 633
           |||||||||||||||||||||||| || |||||||||||
Sbjct: 411 ttcatcctgataagccttggcctcggcagtgtcatccat 373
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>dbj|AK175654.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-14-E11
          Length = 950

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                  
Query: 595 ttcatcctgataagccttggcctcagctgtgtcatccat 633
           |||||||||||||||||||||||| || |||||||||||
Sbjct: 455 ttcatcctgataagccttggcctcggcagtgtcatccat 417
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>emb|AL590346.1|ATT2K12 Arabidopsis thaliana DNA chromosome 5, BAC clone T2K12 (ESSA project)
          Length = 82896

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                  
Query: 597   catcctgataagccttggcctcagctgtgtcatccat 633
             |||||||||||||||||||||| || |||||||||||
Sbjct: 79177 catcctgataagccttggcctcggcagtgtcatccat 79141
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>emb|AL391712.1|ATT5E8 Arabidopsis thaliana DNA chromosome 5, BAC clone T5E8 (ESSA project)
          Length = 103534

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                  
Query: 597   catcctgataagccttggcctcagctgtgtcatccat 633
             |||||||||||||||||||||| || |||||||||||
Sbjct: 18507 catcctgataagccttggcctcggcagtgtcatccat 18471
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>emb|BX833306.1|CNS09YZ9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL43ZG02 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 1032

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                  
Query: 595 ttcatcctgataagccttggcctcagctgtgtcatccat 633
           |||||||||| ||||||||||||| || |||||||||||
Sbjct: 447 ttcatcctgaaaagccttggcctcggcagtgtcatccat 409
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>emb|BX831905.1|CNS09ZWG Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH38ZG01 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1253

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 595 ttcatcctgataagccttggcctc 618
           ||||||||||||||||||||||||
Sbjct: 823 ttcatcctgataagccttggcctc 800
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>ref|NM_012972.1| Rattus norvegicus potassium voltage-gated channel, shaker-related
           subfamily, member 5 (Kcna5), mRNA
          Length = 1809

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 549 cctcctcatcctcagcagatag 570
           ||||||||||||||||||||||
Sbjct: 259 cctcctcatcctcagcagatag 238
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>ref|XM_710688.1| Candida albicans SC5314 hypothetical protein (CaO19_2850), mRNA
          Length = 5757

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 406  aacatcatcaatgtcttcagct 427
            ||||||||||||||||||||||
Sbjct: 2364 aacatcatcaatgtcttcagct 2343
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>gb|AC146748.16| Medicago truncatula clone mth2-65k8, complete sequence
          Length = 113744

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 104   acatttgacatcataatcgatg 125
             ||||||||||||||||||||||
Sbjct: 22403 acatttgacatcataatcgatg 22382
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>gb|M27158.1|RATKV1AA Rat potassium channel-Kv1 gene, complete cds
          Length = 3291

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 549  cctcctcatcctcagcagatag 570
            ||||||||||||||||||||||
Sbjct: 1019 cctcctcatcctcagcagatag 998
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>ref|XM_445951.1| Candida glabrata CBS138, CAGL0E06028g partial mRNA
          Length = 999

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 446 gctgctttaggtttcttttca 466
           |||||||||||||||||||||
Sbjct: 602 gctgctttaggtttcttttca 582
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>emb|CR380951.1| Candida glabrata strain CBS138 chromosome E complete sequence
          Length = 687501

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 446    gctgctttaggtttcttttca 466
              |||||||||||||||||||||
Sbjct: 598384 gctgctttaggtttcttttca 598364
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>gb|BC090116.1| Xenopus tropicalis cDNA clone IMAGE:6988471, containing frame-shift
            errors
          Length = 4191

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 504  caagtgcaagctcagcttcca 524
            |||||||||||||||||||||
Sbjct: 2532 caagtgcaagctcagcttcca 2512
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>gb|AE000520.1| Treponema pallidum subsp. pallidum str. Nichols complete genome
          Length = 1138011

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 495    gcagagactcaagtgcaagct 515
              |||||||||||||||||||||
Sbjct: 950582 gcagagactcaagtgcaagct 950562
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>ref|XM_363762.1| Magnaporthe grisea 70-15 hypothetical protein (MG01688.4) partial
           mRNA
          Length = 1455

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 546 cagcctcctcatcctcagca 565
           ||||||||||||||||||||
Sbjct: 340 cagcctcctcatcctcagca 321
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>gb|BC021787.1| Mus musculus potassium voltage-gated channel, shaker-related
           subfamily, member 5, mRNA (cDNA clone MGC:25248
           IMAGE:4527103), complete cds
          Length = 2831

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 549 cctcctcatcctcagcagat 568
           ||||||||||||||||||||
Sbjct: 449 cctcctcatcctcagcagat 430
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>gb|AC142267.3| Mus musculus BAC clone RP24-131K10 from chromosome Y, complete sequence
          Length = 151710

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 451   tttaggtttcttttcaggtt 470
             ||||||||||||||||||||
Sbjct: 32046 tttaggtttcttttcaggtt 32065
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>emb|CR936364.7| M.truncatula DNA sequence from clone MTH2-193I1 on chromosome 3,
             complete sequence
          Length = 119364

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 62/76 (81%)
 Strand = Plus / Plus

                                                                         
Query: 597   catcctgataagccttggcctcagctgtgtcatccattaacttttggacatcgtcgatgt 656
             |||| |||||||| || || ||||| ||||||||||| |  || || ||||| || ||||
Sbjct: 86227 catcttgataagcttttgcttcagcggtgtcatccataagtttctgaacatcttcaatgt 86286

                             
Query: 657   taatctcactctgtat 672
             | |||||||| |||||
Sbjct: 86287 ttatctcactttgtat 86302
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>gb|AC125315.4| Mus musculus BAC clone RP24-370B21 from chromosome 19, complete
             sequence
          Length = 155192

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   cttatgaaatgacagaatta 232
             ||||||||||||||||||||
Sbjct: 99840 cttatgaaatgacagaatta 99859
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>gb|AC121773.3| Mus musculus BAC clone RP23-349P14 from chromosome 1, complete sequence
          Length = 191790

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 455   ggtttcttttcaggttgtacttca 478
             ||||||||||||| ||||||||||
Sbjct: 93046 ggtttcttttcagtttgtacttca 93069
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>gb|AC122312.3| Mus musculus BAC clone RP23-298K16 from 19, complete sequence
          Length = 206657

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 219   aaatgacagaattaagtaat 238
             ||||||||||||||||||||
Sbjct: 61707 aaatgacagaattaagtaat 61688
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>gb|AC004870.2| Homo sapiens PAC clone RP4-739M23 from 7, complete sequence
          Length = 144546

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 587   gcatttatttcatcctgata 606
             ||||||||||||||||||||
Sbjct: 33837 gcatttatttcatcctgata 33856
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>emb|AL391903.15| Human DNA sequence from clone RP1-229K20 on chromosome 6 Contains 4
             pseudogenes and the TREM1 gene for  triggering receptor
             expressed on myeloid cells 1, complete sequence
          Length = 92814

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 586   ggcatttatttcatcctgat 605
             ||||||||||||||||||||
Sbjct: 76446 ggcatttatttcatcctgat 76427
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>emb|CR378665.1| Photobacterium profundum SS9; segment 3/12
          Length = 347213

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 400    ctcaataacatcatcaatgt 419
              ||||||||||||||||||||
Sbjct: 290712 ctcaataacatcatcaatgt 290731
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>gb|BC095619.1| Danio rerio zgc:111960, mRNA (cDNA clone MGC:111960 IMAGE:7254600),
           complete cds
          Length = 1474

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 424 agctggagcttcagtgtaag 443
           ||||||||||||||||||||
Sbjct: 675 agctggagcttcagtgtaag 694
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>gb|AC016017.14| Mus Musculus Strain C57BL6/J Chromosome 6 BAC Clone RP23-274F23, complete
              sequence
          Length = 184892

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 549    cctcctcatcctcagcagat 568
              ||||||||||||||||||||
Sbjct: 116950 cctcctcatcctcagcagat 116931
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>gb|AC010406.7| Homo sapiens chromosome 5 clone CTD-2154H6, complete sequence
          Length = 95089

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 389   acatcaggaagctcaataac 408
             ||||||||||||||||||||
Sbjct: 37770 acatcaggaagctcaataac 37751
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>dbj|AK146843.1| Mus musculus 17 days embryo stomach cDNA, RIKEN full-length
           enriched library, clone:I920063I12 product:potassium
           voltage-gated channel, shaker-related subfamily, member
           5, full insert sequence
          Length = 2593

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 549 cctcctcatcctcagcagat 568
           ||||||||||||||||||||
Sbjct: 468 cctcctcatcctcagcagat 449
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>gb|AF302768.1|AF302768 Mus musculus potassium voltage-gated channel Kv1.5 (Kcna5) gene,
            complete cds
          Length = 6162

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 549  cctcctcatcctcagcagat 568
            ||||||||||||||||||||
Sbjct: 2946 cctcctcatcctcagcagat 2927
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>ref|NM_001020634.1| Danio rerio zgc:111960 (zgc:111960), mRNA
          Length = 1474

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 424 agctggagcttcagtgtaag 443
           ||||||||||||||||||||
Sbjct: 675 agctggagcttcagtgtaag 694
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>gb|AC008280.4| Homo sapiens BAC clone RP11-477N3 from 2, complete sequence
          Length = 180595

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 205    caatgaaacttatgaaatga 224
              ||||||||||||||||||||
Sbjct: 154454 caatgaaacttatgaaatga 154435
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>gb|AC149900.2| Xenopus tropicalis clone ISB-357K7, complete sequence
          Length = 87677

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 252   agatattttacagctcctgc 271
             ||||||||||||||||||||
Sbjct: 26524 agatattttacagctcctgc 26505
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>gb|AC010423.8| Homo sapiens chromosome 5 clone CTD-2193G5, complete sequence
          Length = 183787

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 389    acatcaggaagctcaataac 408
              ||||||||||||||||||||
Sbjct: 171553 acatcaggaagctcaataac 171572
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>gb|AC160057.2| Pan troglodytes BAC clone CH251-416M4 from chromosome unknown, complete
             sequence
          Length = 168684

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 586   ggcatttatttcatcctgat 605
             ||||||||||||||||||||
Sbjct: 69154 ggcatttatttcatcctgat 69135
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>gb|AC154106.2| Mus musculus BAC clone RP24-312B8 from Y, complete sequence
          Length = 136838

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 451   tttaggtttcttttcaggtt 470
             ||||||||||||||||||||
Sbjct: 70769 tttaggtttcttttcaggtt 70788



 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 451   tttaggtttcttttcaggtt 470
             ||||||||||||||||||||
Sbjct: 25864 tttaggtttcttttcaggtt 25845
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>gb|AE015450.1| Mycoplasma gallisepticum strain R complete genome
          Length = 996422

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 400    ctcaataacatcatcaatgt 419
              ||||||||||||||||||||
Sbjct: 990886 ctcaataacatcatcaatgt 990905
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>gb|AF108659.1|AF108659 Mus musculus ventricular potassium channel Kv1.5 mRNA, complete cds
          Length = 2865

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 549 cctcctcatcctcagcagat 568
           ||||||||||||||||||||
Sbjct: 508 cctcctcatcctcagcagat 489
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>gb|AC079438.30| Mus musculus strain C57BL/6J chromosome 6 clone rp23-176m22, complete
             sequence
          Length = 209643

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 549   cctcctcatcctcagcagat 568
             ||||||||||||||||||||
Sbjct: 36145 cctcctcatcctcagcagat 36164
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>emb|CR936258.1| Natronomonas pharaonis DSM 2160 plasmid PL131 complete genome
          Length = 130989

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 274    actgcaggacttggagttcc 293
              ||||||||||||||||||||
Sbjct: 129775 actgcaggacttggagttcc 129794
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>ref|NM_145983.1| Mus musculus potassium voltage-gated channel, shaker-related
           subfamily, member 5 (Kcna5), mRNA
          Length = 2865

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 549 cctcctcatcctcagcagat 568
           ||||||||||||||||||||
Sbjct: 508 cctcctcatcctcagcagat 489
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>gb|AC170870.2| Mus musculus BAC clone RP24-303O21 from chromosome y, complete
            sequence
          Length = 169086

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 451  tttaggtttcttttcaggtt 470
            ||||||||||||||||||||
Sbjct: 5653 tttaggtttcttttcaggtt 5672
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>gb|L22218.1|MUSKCHANN Mus musculus cardiac KV1.5 delayed rectifier K+ channel protein
           mRNA, complete cds
          Length = 2912

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 549 cctcctcatcctcagcagat 568
           ||||||||||||||||||||
Sbjct: 556 cctcctcatcctcagcagat 537


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8,142,882
Number of Sequences: 3902068
Number of extensions: 8142882
Number of successful extensions: 146425
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 146263
Number of HSP's gapped (non-prelim): 161
length of query: 701
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 678
effective length of database: 17,143,297,704
effective search space: 11623155843312
effective search space used: 11623155843312
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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