ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags22o09 |
|---|---|
| Clone Library Name | barley_pub |
>TRS31_SCHPO (Q9P7N9) Transport protein particle subunit trs31 (TRAPP subunit| trs31) Length = 209 Score = 145 bits (367), Expect = 5e-35 Identities = 76/136 (55%), Positives = 95/136 (69%) Frame = -2 Query: 523 GYAVGARVLELLCHREKGNRRETRLLGILSFIHSTVWKVLFGKVADSLEKGTEHEDEYMI 344 GY VG +++EL+ RE+ +RETR+LGIL +IHS+VWK LFGK ADSLEK E DEYMI Sbjct: 75 GYRVGQKLVELVVWRERNPKRETRILGILQYIHSSVWKYLFGKHADSLEKSKEASDEYMI 134 Query: 343 SEKELLVNRFISVPKDMGAFNCGAFVAGIVRGVLDNAGFPAVVTAHFVPIEGQQRPRTTI 164 + L+N+FISVPK+M NC A++AGI+ G LD+A FP +AH VP+ Q RT I Sbjct: 135 VDNNPLLNKFISVPKEMNQLNCCAYLAGIIEGFLDSAQFPCKASAHSVPL-SQYPYRTVI 193 Query: 163 LIKFAEEVIHREARLG 116 LIK VI RE LG Sbjct: 194 LIKLDPSVIAREEVLG 209
>TPPC5_MOUSE (Q9CQA1) Trafficking protein particle complex subunit 5| Length = 188 Score = 127 bits (319), Expect = 2e-29 Identities = 68/135 (50%), Positives = 86/135 (63%) Frame = -2 Query: 523 GYAVGARVLELLCHREKGNRRETRLLGILSFIHSTVWKVLFGKVADSLEKGTEHEDEYMI 344 G VGARVL+ L REKG RRET++LG L F+ VWK LFGK AD LE+ + + I Sbjct: 58 GRQVGARVLDALVAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYI 117 Query: 343 SEKELLVNRFISVPKDMGAFNCGAFVAGIVRGVLDNAGFPAVVTAHFVPIEGQQRPRTTI 164 E+E L+N +ISVPK+ NC +F AGIV VL ++GFPA VTAH+ TT+ Sbjct: 118 IEREPLINTYISVPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHW-------HKGTTL 170 Query: 163 LIKFAEEVIHREARL 119 +IKF E VI R+ L Sbjct: 171 MIKFEEAVIARDRAL 185
>TPPC5_HUMAN (Q8IUR0) Trafficking protein particle complex subunit 5| Length = 188 Score = 127 bits (319), Expect = 2e-29 Identities = 68/135 (50%), Positives = 86/135 (63%) Frame = -2 Query: 523 GYAVGARVLELLCHREKGNRRETRLLGILSFIHSTVWKVLFGKVADSLEKGTEHEDEYMI 344 G VGARVL+ L REKG RRET++LG L F+ VWK LFGK AD LE+ + + I Sbjct: 58 GRQVGARVLDALVAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYI 117 Query: 343 SEKELLVNRFISVPKDMGAFNCGAFVAGIVRGVLDNAGFPAVVTAHFVPIEGQQRPRTTI 164 E+E L+N +ISVPK+ NC +F AGIV VL ++GFPA VTAH+ TT+ Sbjct: 118 IEREPLINTYISVPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHW-------HKGTTL 170 Query: 163 LIKFAEEVIHREARL 119 +IKF E VI R+ L Sbjct: 171 MIKFEEAVIARDRAL 185
>TPPC5_CHICK (Q5F359) Trafficking protein particle complex subunit 5| Length = 188 Score = 124 bits (312), Expect = 1e-28 Identities = 64/135 (47%), Positives = 86/135 (63%) Frame = -2 Query: 523 GYAVGARVLELLCHREKGNRRETRLLGILSFIHSTVWKVLFGKVADSLEKGTEHEDEYMI 344 G+ VG R+L+ L RE+G RRET++L +L F+ VW+ LFGK AD LE+ + + Y + Sbjct: 58 GHQVGLRLLDPLVSRERGGRRETKVLSVLLFVKGPVWRALFGKEADKLEQANDDDKTYYV 117 Query: 343 SEKELLVNRFISVPKDMGAFNCGAFVAGIVRGVLDNAGFPAVVTAHFVPIEGQQRPRTTI 164 E+E LVN FISVP++ NC AF AG+V VL +GFPA VTAH+ TT+ Sbjct: 118 IEREPLVNTFISVPRENSTLNCAAFTAGLVEAVLGASGFPAKVTAHW-------HKGTTL 170 Query: 163 LIKFAEEVIHREARL 119 +IKF E VI R+ L Sbjct: 171 MIKFEEGVIARDKSL 185
>TPPC5_PLAFA (P15847) Trafficking protein particle complex subunit 5 (41-2| protein antigen) Length = 184 Score = 103 bits (257), Expect = 3e-22 Identities = 61/134 (45%), Positives = 81/134 (60%) Frame = -2 Query: 529 DAGYAVGARVLELLCHREKGNRRETRLLGILSFIHSTVWKVLFGKVADSLEKGTEHEDEY 350 + G VG ++ E L ++ K +R ++ IL+FI VWK LF +D L K + EY Sbjct: 51 EMGLRVGYKLNEYLTYKNKV-KRSINIINILTFISKHVWKYLFQHSSDLL-KSQDSIYEY 108 Query: 349 MISEKELLVNRFISVPKDMGAFNCGAFVAGIVRGVLDNAGFPAVVTAHFVPIEGQQRPRT 170 MI +K +L+N+FI+VPKD G NC AF AGIV G L ++ F A VTAH + EG T Sbjct: 109 MICDKNILLNKFINVPKDYGNINCAAFAAGIVEGFLCSSEFQADVTAHTIH-EGDDNYNT 167 Query: 169 TILIKFAEEVIHRE 128 TI IKF EV+ RE Sbjct: 168 TIFIKFYPEVVERE 181
>TPPC5_PLAF7 (Q7KQM2) Trafficking protein particle complex subunit 5 (41-2| protein antigen) Length = 184 Score = 103 bits (257), Expect = 3e-22 Identities = 61/134 (45%), Positives = 81/134 (60%) Frame = -2 Query: 529 DAGYAVGARVLELLCHREKGNRRETRLLGILSFIHSTVWKVLFGKVADSLEKGTEHEDEY 350 + G VG ++ E L ++ K +R ++ IL+FI VWK LF +D L K + EY Sbjct: 51 EMGLRVGYKLNEYLTYKNKV-KRSINIINILTFISKHVWKYLFQHSSDLL-KSQDSIYEY 108 Query: 349 MISEKELLVNRFISVPKDMGAFNCGAFVAGIVRGVLDNAGFPAVVTAHFVPIEGQQRPRT 170 MI +K +L+N+FI+VPKD G NC AF AGIV G L ++ F A VTAH + EG T Sbjct: 109 MICDKNILLNKFINVPKDYGNINCAAFAAGIVEGFLCSSEFQADVTAHTIH-EGDDNYNT 167 Query: 169 TILIKFAEEVIHRE 128 TI IKF EV+ RE Sbjct: 168 TIFIKFYPEVVERE 181
>TRS31_YEAST (Q03337) Transport protein particle 31 kDa subunit (TRAPP 31 kDa| subunit) Length = 283 Score = 90.5 bits (223), Expect = 3e-18 Identities = 50/116 (43%), Positives = 69/116 (59%) Frame = -2 Query: 475 KGNRRETRLLGILSFIHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISVPKD 296 K RR+ ++L IL FIH T+W LF V+D L K +E ++EYMI + + +FI Sbjct: 168 KMRRRDLKILDILQFIHGTLWSYLFNHVSDDLVKSSERDNEYMIVDNFPTLTQFIPGEN- 226 Query: 295 MGAFNCGAFVAGIVRGVLDNAGFPAVVTAHFVPIEGQQRPRTTILIKFAEEVIHRE 128 +C FV GI++G L NAGFP VTAH +P +G RT LI+F +V+ RE Sbjct: 227 ---VSCEYFVCGIIKGFLFNAGFPCGVTAHRMP-QGGHSQRTVYLIQFDRQVLDRE 278
>TPC6B_HUMAN (Q86SZ2) Trafficking protein particle complex subunit 6B| Length = 158 Score = 44.3 bits (103), Expect = 2e-04 Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 2/110 (1%) Frame = -2 Query: 532 EDAGYAVGARVLELLCHREKGNRRETRLLGILSFIHSTVWKVLFGKVADSLEKGTEHEDE 353 E+ G+ VG ++E K R L I+ FI W +F K D+L T H+ Sbjct: 37 ENMGFRVGQGLIERFT---KDTARFKDELDIMKFICKDFWTTVFKKQIDNLR--TNHQGI 91 Query: 352 YMISEKELLVNRFISVPKDM--GAFNCGAFVAGIVRGVLDNAGFPAVVTA 209 Y++ + + + +S K A AF G++RG L N G ++VTA Sbjct: 92 YVLQDNKFRLLTQMSAGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTA 141
>TPC6B_MOUSE (Q9D289) Trafficking protein particle complex subunit 6B| Length = 158 Score = 43.5 bits (101), Expect = 4e-04 Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 2/110 (1%) Frame = -2 Query: 532 EDAGYAVGARVLELLCHREKGNRRETRLLGILSFIHSTVWKVLFGKVADSLEKGTEHEDE 353 E G+ VG ++E K R L I+ FI W +F K D+L T H+ Sbjct: 37 ESMGFRVGQGLIERFT---KDTARFKDELDIMKFICKDFWTTVFKKQIDNLR--TNHQGI 91 Query: 352 YMISEKELLVNRFISVPKDM--GAFNCGAFVAGIVRGVLDNAGFPAVVTA 209 Y++ + + + +S K A AF G++RG L N G ++VTA Sbjct: 92 YVLQDNKFRLLIQLSAGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTA 141
>TRS33_YEAST (Q99394) Transport protein particle 33 kDa subunit (TRAPP 33 kDa| subunit) Length = 268 Score = 42.0 bits (97), Expect = 0.001 Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 11/129 (8%) Frame = -2 Query: 523 GYAVGARVLELLCHREKGNRR--ETRLLGILSFIHSTVWKVLFGKVADSLEKGTEHEDEY 350 G+ +G ++ ELL N + E LL I+ FI VWK +FGK D+L+ T H + Sbjct: 127 GFQIGLKLSELLIFSNNPNLKFKEMDLLLIMKFICRDVWKQIFGKQIDNLK--TNHRGTF 184 Query: 349 MISEKELLVNRFISVPKDMGAFNCG------AFVAGIVRGVLDNAGFPA---VVTAHFVP 197 + + + + S+ +D GI+RGVL + G+ + + A F+ Sbjct: 185 YLLDYDYRPIQSFSLEEDAKNEELKMIEPFLEIPVGIIRGVLSSLGYSSEEVICLASFID 244 Query: 196 IEGQQRPRT 170 RP+T Sbjct: 245 -RPTDRPKT 252
>TPC6A_MOUSE (Q78XR0) Trafficking protein particle complex subunit 6A| Length = 159 Score = 35.8 bits (81), Expect = 0.076 Identities = 33/110 (30%), Positives = 46/110 (41%), Gaps = 2/110 (1%) Frame = -2 Query: 532 EDAGYAVGARVLELLCHREKGNRRETRLLGILSFIHSTVWKVLFGKVADSLEKGTEHEDE 353 E G+ VG + E L R E L L F+ +W +F K D L T H+ Sbjct: 38 EGLGFRVGQALGERLPLETPAFREE---LDALKFLCRDLWAAMFQKHMDGLR--TNHQGT 92 Query: 352 YMISEKE--LLVNRFISVPKDMGAFNCGAFVAGIVRGVLDNAGFPAVVTA 209 Y++ + LLV A AF G++ G L GF ++VTA Sbjct: 93 YVLQDNSFPLLVTMGSGPQYLEEAPKFLAFTCGLLCGALHTLGFQSLVTA 142
>PEM4_PHACH (P19136) Peroxidase manganese-dependent H4 precursor (EC 1.11.1.13)| (MP-I) Length = 382 Score = 32.0 bits (71), Expect = 1.1 Identities = 20/60 (33%), Positives = 27/60 (45%) Frame = +3 Query: 102 WQKFQPSLASRCITSSANLIKIVVLGLCWPSIGTKCAVTTAGKPALSNTPLTIPATKAPQ 281 WQ F + A + K+ +LG S+ V KPA+ N P T PATK P+ Sbjct: 279 WQSFVNEQEFMAASFKAAMAKLAILGHSRSSLIDCSDVVPVPKPAV-NKPATFPATKGPK 337
>VC13_SWPVK (P32206) Protein C13| Length = 500 Score = 30.8 bits (68), Expect = 2.5 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = -3 Query: 435 HSFTARYGKYCLERWLTRLRKGQNMRMN 352 +++ + YGKY L +WL R K N+ +N Sbjct: 212 YNYLSIYGKYKLTKWLARFGKNNNVELN 239
>VS10_ROTHC (Q00682) Minor outer capsid protein (NS26)| Length = 212 Score = 29.3 bits (64), Expect = 7.2 Identities = 16/37 (43%), Positives = 22/37 (59%) Frame = -2 Query: 391 ADSLEKGTEHEDEYMISEKELLVNRFISVPKDMGAFN 281 A S K TE+E M S+ LLVN + + ++GAFN Sbjct: 124 AKSKLKETENEITEMKSKTNLLVNASVGINSNVGAFN 160
>ZN611_HUMAN (Q8N823) Zinc finger protein 611| Length = 705 Score = 29.3 bits (64), Expect = 7.2 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 4/54 (7%) Frame = +2 Query: 167 RCPGPLLAFNWHKMCRHHRRKASVVQYAPYNPCNKS----STVECSHVFRHGNE 316 RC AF WH HRR + + N C K+ S++ C H HG E Sbjct: 399 RCKVCDTAFTWHSQLARHRRIHTAKKTYKCNECGKTFSHKSSLVCHHRL-HGGE 451
>CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI) Length = 2424 Score = 28.9 bits (63), Expect = 9.3 Identities = 12/38 (31%), Positives = 22/38 (57%) Frame = -2 Query: 451 LLGILSFIHSTVWKVLFGKVADSLEKGTEHEDEYMISE 338 L+ +L FI++ + +FG + +E EDE+ I+E Sbjct: 1707 LIAMLFFIYAIIGMQVFGNIGIDMEDEDSDEDEFQITE 1744
>Y856_TREPA (O83828) Hypothetical UPF0164 protein TP0856 precursor| Length = 325 Score = 28.9 bits (63), Expect = 9.3 Identities = 18/48 (37%), Positives = 22/48 (45%) Frame = -1 Query: 269 CCRDCKGRIGQRWLSCGGDGTFCAN*RPTEAQDNDLD*IC*RGYTPGS 126 CC+ C GR C G GT C +P +D D + C TPGS Sbjct: 237 CCKTCSGR-------CTGVGTCCNGEKPC-CKDCDCNCPCQDEATPGS 276
>MUTS_BRUSU (Q8G310) DNA mismatch repair protein mutS| Length = 910 Score = 28.9 bits (63), Expect = 9.3 Identities = 15/38 (39%), Positives = 20/38 (52%) Frame = -2 Query: 304 PKDMGAFNCGAFVAGIVRGVLDNAGFPAVVTAHFVPIE 191 P+D+GA CG AG + +LD A P + A IE Sbjct: 389 PRDLGALACGFEAAGGIASLLDGALLPDELAAAREAIE 426
>MUTS_BRUME (Q8YES6) DNA mismatch repair protein mutS| Length = 910 Score = 28.9 bits (63), Expect = 9.3 Identities = 15/38 (39%), Positives = 20/38 (52%) Frame = -2 Query: 304 PKDMGAFNCGAFVAGIVRGVLDNAGFPAVVTAHFVPIE 191 P+D+GA CG AG + +LD A P + A IE Sbjct: 389 PRDLGALACGFEAAGGIASLLDGALLPDELAAAREAIE 426
>MUTS_BRUAB (Q57FM9) DNA mismatch repair protein mutS| Length = 910 Score = 28.9 bits (63), Expect = 9.3 Identities = 15/38 (39%), Positives = 20/38 (52%) Frame = -2 Query: 304 PKDMGAFNCGAFVAGIVRGVLDNAGFPAVVTAHFVPIE 191 P+D+GA CG AG + +LD A P + A IE Sbjct: 389 PRDLGALACGFEAAGGIASLLDGALLPDELAAAREAIE 426
>KBRS2_HUMAN (Q9NYR9) NF-kappa-B inhibitor-interacting Ras-like protein 2| (I-kappa-B-interacting Ras-like protein 2) (Kappa B-Ras protein 2) (KappaB-Ras2) Length = 191 Score = 28.9 bits (63), Expect = 9.3 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%) Frame = +3 Query: 27 QSEKFKLWEINFADKNNLSQQGVHRWQKF-QPSLASRCITSSAN 155 +SEK KLWE++ AD+ +L + V+ K QP S S N Sbjct: 140 KSEKVKLWEVSVADRRSLLEPFVYLASKMTQPQSKSAFPLSRKN 183
>TPPC3_RAT (Q5U1Z2) Trafficking protein particle complex subunit 3| Length = 180 Score = 28.9 bits (63), Expect = 9.3 Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 5/100 (5%) Frame = -2 Query: 523 GYAVGARVLELLCHREKGNR----RETRLLGILSFIHSTVWKVLFGKVADSLEKGTEHED 356 GY +G R++E R R RET I +K+ G + S+ + D Sbjct: 48 GYNIGVRLIEDFLARSNVGRCHDFRETA-----DVIAKVAFKMYLG-ITPSITNWSPAGD 101 Query: 355 EY-MISEKELLVNRFISVPKDMGAFNCGAFVAGIVRGVLD 239 E+ +I E LV+ F+ +P + A + G++RG L+ Sbjct: 102 EFSLILENNPLVD-FVELPDNHSALIYSNLLCGVLRGALE 140
>TPPC3_MOUSE (O55013) Trafficking protein particle complex subunit 3 (BET3| homolog) Length = 180 Score = 28.9 bits (63), Expect = 9.3 Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 5/100 (5%) Frame = -2 Query: 523 GYAVGARVLELLCHREKGNR----RETRLLGILSFIHSTVWKVLFGKVADSLEKGTEHED 356 GY +G R++E R R RET I +K+ G + S+ + D Sbjct: 48 GYNIGVRLIEDFLARSNVGRCHDFRETA-----DVIAKVAFKMYLG-ITPSITNWSPAGD 101 Query: 355 EY-MISEKELLVNRFISVPKDMGAFNCGAFVAGIVRGVLD 239 E+ +I E LV+ F+ +P + A + G++RG L+ Sbjct: 102 EFSLILENNPLVD-FVELPDNHSALIYSNLLCGVLRGALE 140
>COG8_MOUSE (Q9JJA2) Conserved oligomeric Golgi complex component 8| Length = 640 Score = 28.9 bits (63), Expect = 9.3 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = +3 Query: 213 VTTAGKPALSNTPLTIPATKAPQLNAPM 296 ++TA + SNTP T+PAT+ L PM Sbjct: 406 ISTAAILSSSNTPATVPATQPGTLQPPM 433 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,475,278 Number of Sequences: 219361 Number of extensions: 1689819 Number of successful extensions: 5135 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 4905 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5123 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4142954952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
