ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags22o08 |
|---|---|
| Clone Library Name | barley_pub |
>GDA1_SCHPO (Q9UT35) Guanosine-diphosphatase (EC 3.6.1.42) (GDPase)| Length = 556 Score = 33.9 bits (76), Expect = 0.53 Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 3/31 (9%) Frame = -1 Query: 443 PRFVEDGHSRFDGTSEYKLDKNG---KIYQH 360 PRF DG S DG +Y LD NG ++YQH Sbjct: 296 PRFASDGESLVDGDHKYVLDYNGEQYELYQH 326
>MTFA_PHOLL (Q7N8R4) Putative RNA 2'-O-ribose methyltransferase mtfA (EC| 2.1.1.-) Length = 366 Score = 32.0 bits (71), Expect = 2.0 Identities = 23/74 (31%), Positives = 31/74 (41%) Frame = -1 Query: 422 HSRFDGTSEYKLDKNGKIYQHKVDNVATNSRKKFKILPVEELLRSLGCPSTPKPTYFKII 243 H+ +GT L G++ HKVD FK P + + L C KP K+ Sbjct: 237 HAVDNGTMSKSLMDTGQVKHHKVDG--------FKFEPSAKNIYWLVCDMVEKPA--KVT 286 Query: 242 SLMPFWLGWTWMRQ 201 LM WL W R+ Sbjct: 287 QLMVDWLVNGWCRE 300
>4F2_MOUSE (P10852) 4F2 cell-surface antigen heavy chain (4F2hc)| Length = 526 Score = 32.0 bits (71), Expect = 2.0 Identities = 22/60 (36%), Positives = 30/60 (50%) Frame = -1 Query: 386 DKNGKIYQHKVDNVATNSRKKFKILPVEELLRSLGCPSTPKPTYFKIISLMPFWLGWTWM 207 +KNG + + KV T + KF L EELL+ G P + + L+ FWLGW M Sbjct: 34 EKNGLV-KIKVAEDETEAGVKFTGLSKEELLKVAGSPGWVRTRW---ALLLLFWLGWLGM 89
>PUR7_CAMJR (Q5HVQ1) Phosphoribosylaminoimidazole-succinocarboxamide synthase| (EC 6.3.2.6) (SAICAR synthetase) Length = 236 Score = 31.6 bits (70), Expect = 2.6 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%) Frame = -1 Query: 389 LDKNGKIYQHKVDNVATNSR--KKFKILPVEELLRSLGCPSTPKPTYFKIISLMPFWL 222 L+KNG I H V+ ++ + KK KI+P+E ++R++ S K K +++PF L Sbjct: 61 LEKNG-IKTHLVETISDTEQVVKKCKIVPIEVIVRNVATGSLTKRLGIKDGTVLPFAL 117
>LEU1B_LYCPN (O04974) 2-isopropylmalate synthase B (EC 2.3.3.13)| (Alpha-isopropylmalate synthase B) (Alpha-IPM synthetase B) Length = 612 Score = 31.2 bits (69), Expect = 3.4 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%) Frame = -3 Query: 273 HSKTNLLQDNLTHAVL--VGMDMDETITVVRPYAGKLSEMLMF 151 H+ T+ L H G DMD I+ VR Y G L++M+ F Sbjct: 554 HTSTHALTGETVHRTFSGTGADMDIVISSVRAYVGALNKMMSF 596
>PUR7_CAMJE (Q9PHZ9) Phosphoribosylaminoimidazole-succinocarboxamide synthase| (EC 6.3.2.6) (SAICAR synthetase) Length = 236 Score = 30.4 bits (67), Expect = 5.8 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%) Frame = -1 Query: 389 LDKNGKIYQHKVDNVATNSR--KKFKILPVEELLRSLGCPSTPKPTYFKIISLMPFWL 222 L+KNG I H V+ ++ + KK KI+P+E ++R++ S K K +++PF L Sbjct: 61 LEKNG-IKTHLVEIISDTEQVVKKCKIVPIEVIVRNVATGSLTKRLGIKDGTVLPFAL 117
>GFPT2_RAT (Q4KMC4) Glucosamine--fructose-6-phosphate aminotransferase| [isomerizing] 2 (EC 2.6.1.16) (Hexosephosphate aminotransferase 2) (D-fructose-6-phosphate amidotransferase 2) (GFAT 2) (GFAT2) Length = 681 Score = 30.4 bits (67), Expect = 5.8 Identities = 14/52 (26%), Positives = 24/52 (46%) Frame = -1 Query: 512 IDIATIWQPVDNVIMVRWIVHGIPRFVEDGHSRFDGTSEYKLDKNGKIYQHK 357 +D+ ++ + RW HG+P V R D +E+ + NG I +K Sbjct: 75 MDLKVEFETHFGIAHTRWATHGVPNVVNSHPQRSDKDNEFVVIHNGIITNYK 126
>DAPA_ARCFU (O29352) Dihydrodipicolinate synthase (EC 4.2.1.52) (DHDPS)| Length = 289 Score = 30.4 bits (67), Expect = 5.8 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 10/76 (13%) Frame = +3 Query: 492 PYSSNVNPQGLEENLAGKAQRPEYPFIAIN---------THEFTERIFE-DNIFSVNVKA 641 PY + N +GL ++ A P I N T E R+ E DNIF + + Sbjct: 102 PYYNKPNAEGLYQHYKAVASEVSIPIIVYNVPSRTGINTTPELVRRLAEIDNIFGIKEAS 161 Query: 642 GFLAEYVRELLPQRPD 689 G L + + E++ PD Sbjct: 162 GNLKQ-ISEIIRTTPD 176
>GFPT2_MOUSE (Q9Z2Z9) Glucosamine--fructose-6-phosphate aminotransferase| [isomerizing] 2 (EC 2.6.1.16) (Hexosephosphate aminotransferase 2) (D-fructose-6-phosphate amidotransferase 2) (GFAT 2) (GFAT2) Length = 681 Score = 30.0 bits (66), Expect = 7.6 Identities = 14/52 (26%), Positives = 24/52 (46%) Frame = -1 Query: 512 IDIATIWQPVDNVIMVRWIVHGIPRFVEDGHSRFDGTSEYKLDKNGKIYQHK 357 +D+ ++ + RW HG+P V R D +E+ + NG I +K Sbjct: 75 MDLKVEFETHFGIAHTRWATHGVPNAVNSHPQRSDKDNEFVVIHNGIITNYK 126
>AVR2A_RAT (P38444) Activin receptor type 2A precursor (EC 2.7.11.30) (Activin| receptor type IIA) (ACTR-IIA) Length = 513 Score = 29.6 bits (65), Expect = 10.0 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%) Frame = -1 Query: 329 KKFKILPVEELLRSLGCPSTPKPTYFKII--SLMPFWL 222 +KF P E+ + P TPKP Y+ I+ SL+P L Sbjct: 112 EKFSYFPEMEVTQPTSNPVTPKPPYYNILLYSLVPLML 149
>AVR2A_MOUSE (P27038) Activin receptor type 2A precursor (EC 2.7.11.30) (Activin| receptor type IIA) (ACTR-IIA) Length = 513 Score = 29.6 bits (65), Expect = 10.0 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%) Frame = -1 Query: 329 KKFKILPVEELLRSLGCPSTPKPTYFKII--SLMPFWL 222 +KF P E+ + P TPKP Y+ I+ SL+P L Sbjct: 112 EKFSYFPEMEVTQPTSNPVTPKPPYYNILLYSLVPLML 149
>AVR2A_HUMAN (P27037) Activin receptor type 2A precursor (EC 2.7.11.30) (Activin| receptor type IIA) (ACTR-IIA) (ACTRIIA) Length = 513 Score = 29.6 bits (65), Expect = 10.0 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%) Frame = -1 Query: 329 KKFKILPVEELLRSLGCPSTPKPTYFKII--SLMPFWL 222 +KF P E+ + P TPKP Y+ I+ SL+P L Sbjct: 112 EKFSYFPEMEVTQPTSNPVTPKPPYYNILLYSLVPLML 149
>MSHR_SEMEN (Q864I8) Melanocyte-stimulating hormone receptor (MSH-R)| (Melanotropin receptor) (Melanocortin receptor 1) (MC1-R) Length = 317 Score = 29.6 bits (65), Expect = 10.0 Identities = 11/32 (34%), Positives = 18/32 (56%) Frame = -1 Query: 587 VGIDSYKRIFWALRFTGQIFFKALWIDIATIW 492 + +D Y IF+ALR+ + + W +A IW Sbjct: 138 IAVDRYISIFYALRYHSIVTLRRAWRVVAAIW 169 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 110,345,534 Number of Sequences: 219361 Number of extensions: 2376142 Number of successful extensions: 6605 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 6410 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6603 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7536258401 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
