| Clone Name | rbags22o08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_507080.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1076_H08.5 mRNA Length = 903 Score = 198 bits (100), Expect = 2e-47 Identities = 352/436 (80%) Strand = Plus / Minus Query: 259 gttggttttggagtggatgggcacccgagtgatctgaggagctcttcgacaggcaaaatc 318 |||||||||||||| |||||||| || |||||||||| ||||||| |||| ||||| | | Sbjct: 785 gttggttttggagtagatgggcatccaagtgatctgatgagctctacgactggcaagacc 726 Query: 319 ttgaacttctttcgtgaattcgtggcaacattgtccaccttatgctggtaaatcttacca 378 || || ||| || ||| ||| |||||||||| || |||||||||| || ||||| ||| Sbjct: 725 ttaaatttcgttggtgtgttcttggcaacattatcaaccttatgctcatagatcttccca 666 Query: 379 ttcttatccaacttatactctgacgtgccatcaaagcgactatgaccatcctctacgaat 438 ||||| || |||||||||||||| ||||| ||||| | | | | |||||| | | | Sbjct: 665 ttcttgtcaaacttatactctgaggtgccttcaaatctgccagggccatccgagagaact 606 Query: 439 ctagggatgccatgaacaatccaccggaccataattacattgtcgactggttgccatata 498 ||||| |||||||| |||||||| |||| ||| ||||||| ||||| || |||||||| Sbjct: 605 ctaggaatgccatggacaatccagcggatcatgattacatcctcgacaggctgccatatg 546 Query: 499 gtagcaatgtcaatccacaaggccttgaagaaaatctggccggtaaagcgcagcgcccag 558 | |||||| ||||| | || ||||||||||| || || ||||| || || |||||| Sbjct: 545 ctgataatgtcgatccatagtgctttgaagaaaatttgcccagtaaaccgtagagcccag 486 Query: 559 aatatccttttatagctatcaatacccacgaatttactgagaggatctttgaagacaata 618 ||||||||||| ||| ||||||||||| ||| ||| ||| ||||||||||||||||||| Sbjct: 485 aatatccttttgtagttatcaatacccgtgaaattattgataggatctttgaagacaata 426 Query: 619 tcttctctgtaaatgtcaaggctgggttcctcgcagaatacgtcagggagctcctcccgc 678 || |||||||| || | | |||||| ||| | |||| || | ||||||||||||||| Sbjct: 425 tcatctctgtagatatggaagctgggctcccggtagaacgcggcggggagctcctcccgc 366 Query: 679 agcgtccggatggcgt 694 |||| ||||||||||| Sbjct: 365 agcgcccggatggcgt 350
>dbj|AK066642.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073I22, full insert sequence Length = 1331 Score = 198 bits (100), Expect = 2e-47 Identities = 352/436 (80%) Strand = Plus / Minus Query: 259 gttggttttggagtggatgggcacccgagtgatctgaggagctcttcgacaggcaaaatc 318 |||||||||||||| |||||||| || |||||||||| ||||||| |||| ||||| | | Sbjct: 900 gttggttttggagtagatgggcatccaagtgatctgatgagctctacgactggcaagacc 841 Query: 319 ttgaacttctttcgtgaattcgtggcaacattgtccaccttatgctggtaaatcttacca 378 || || ||| || ||| ||| |||||||||| || |||||||||| || ||||| ||| Sbjct: 840 ttaaatttcgttggtgtgttcttggcaacattatcaaccttatgctcatagatcttccca 781 Query: 379 ttcttatccaacttatactctgacgtgccatcaaagcgactatgaccatcctctacgaat 438 ||||| || |||||||||||||| ||||| ||||| | | | | |||||| | | | Sbjct: 780 ttcttgtcaaacttatactctgaggtgccttcaaatctgccagggccatccgagagaact 721 Query: 439 ctagggatgccatgaacaatccaccggaccataattacattgtcgactggttgccatata 498 ||||| |||||||| |||||||| |||| ||| ||||||| ||||| || |||||||| Sbjct: 720 ctaggaatgccatggacaatccagcggatcatgattacatcctcgacaggctgccatatg 661 Query: 499 gtagcaatgtcaatccacaaggccttgaagaaaatctggccggtaaagcgcagcgcccag 558 | |||||| ||||| | || ||||||||||| || || ||||| || || |||||| Sbjct: 660 ctgataatgtcgatccatagtgctttgaagaaaatttgcccagtaaaccgtagagcccag 601 Query: 559 aatatccttttatagctatcaatacccacgaatttactgagaggatctttgaagacaata 618 ||||||||||| ||| ||||||||||| ||| ||| ||| ||||||||||||||||||| Sbjct: 600 aatatccttttgtagttatcaatacccgtgaaattattgataggatctttgaagacaata 541 Query: 619 tcttctctgtaaatgtcaaggctgggttcctcgcagaatacgtcagggagctcctcccgc 678 || |||||||| || | | |||||| ||| | |||| || | ||||||||||||||| Sbjct: 540 tcatctctgtagatatggaagctgggctcccggtagaacgcggcggggagctcctcccgc 481 Query: 679 agcgtccggatggcgt 694 |||| ||||||||||| Sbjct: 480 agcgcccggatggcgt 465
>ref|NM_188507.1| Oryza sativa (japonica cultivar-group), Ozsa8176 predicted mRNA Length = 717 Score = 190 bits (96), Expect = 4e-45 Identities = 175/200 (87%), Gaps = 1/200 (0%) Strand = Plus / Minus Query: 523 ttgaagaaaatctggccggtaaagcgcagcgcccagaatatccttttatagctatcaata 582 |||||||| || ||||||| ||||||| |||||||||||||||||||| ||||||| Sbjct: 470 ttgaagaagattcggccggtgaagcgcaatgcccagaatatccttttataattatcaatg 411 Query: 583 cccacgaatttactgagaggatctttgaagacaatatcttctctgtaaatgtcaaggctg 642 ||| |||||||| ||||||||||||||||||||||||| |||||||| ||||| | |||| Sbjct: 410 ccctcgaatttattgagaggatctttgaagacaatatcatctctgtagatgtcgaagctg 351 Query: 643 ggttcctcgcagaatacgtcagggagctcctcccgcagcgtccggatggcgtacccccat 702 || |||| | |||| || || ||||||||||||| |||||||||||||||||| |||||| Sbjct: 350 ggctccttggagaagacatcggggagctcctccctcagcgtccggatggcgta-ccccat 292 Query: 703 gttcacgtagtacctccgcc 722 ||| | |||||||||||||| Sbjct: 291 gttgaggtagtacctccgcc 272 Score = 42.1 bits (21), Expect = 2.5 Identities = 54/65 (83%) Strand = Plus / Minus Query: 354 caccttatgctggtaaatcttaccattcttatccaacttatactctgacgtgccatcaaa 413 ||||||||||| ||| ||||| |||||||| || | |||||||| || | |||||||| Sbjct: 639 caccttatgctcgtagatcttcccattcttgtcgagtttatactcagaagcaccatcaaa 580 Query: 414 gcgac 418 ||||| Sbjct: 579 gcgac 575
>gb|AC108498.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1076_H08, complete sequence Length = 148348 Score = 176 bits (89), Expect = 7e-41 Identities = 299/369 (81%) Strand = Plus / Minus Query: 259 gttggttttggagtggatgggcacccgagtgatctgaggagctcttcgacaggcaaaatc 318 |||||||||||||| |||||||| || |||||||||| ||||||| |||| ||||| | | Sbjct: 37673 gttggttttggagtagatgggcatccaagtgatctgatgagctctacgactggcaagacc 37614 Query: 319 ttgaacttctttcgtgaattcgtggcaacattgtccaccttatgctggtaaatcttacca 378 || || ||| || ||| ||| |||||||||| || |||||||||| || ||||| ||| Sbjct: 37613 ttaaatttcgttggtgtgttcttggcaacattatcaaccttatgctcatagatcttccca 37554 Query: 379 ttcttatccaacttatactctgacgtgccatcaaagcgactatgaccatcctctacgaat 438 ||||| || |||||||||||||| ||||| ||||| | | | | |||||| | | | Sbjct: 37553 ttcttgtcaaacttatactctgaggtgccttcaaatctgccagggccatccgagagaact 37494 Query: 439 ctagggatgccatgaacaatccaccggaccataattacattgtcgactggttgccatata 498 ||||| |||||||| |||||||| |||| ||| ||||||| ||||| || |||||||| Sbjct: 37493 ctaggaatgccatggacaatccagcggatcatgattacatcctcgacaggctgccatatg 37434 Query: 499 gtagcaatgtcaatccacaaggccttgaagaaaatctggccggtaaagcgcagcgcccag 558 | |||||| ||||| | || ||||||||||| || || ||||| || || |||||| Sbjct: 37433 ctgataatgtcgatccatagtgctttgaagaaaatttgcccagtaaaccgtagagcccag 37374 Query: 559 aatatccttttatagctatcaatacccacgaatttactgagaggatctttgaagacaata 618 ||||||||||| ||| ||||||||||| ||| ||| ||| ||||||||||||||||||| Sbjct: 37373 aatatccttttgtagttatcaatacccgtgaaattattgataggatctttgaagacaata 37314 Query: 619 tcttctctg 627 || |||||| Sbjct: 37313 tcatctctg 37305 Score = 54.0 bits (27), Expect = 7e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 664 gggagctcctcccgcagcgtccggatggcgt 694 ||||||||||||||||||| ||||||||||| Sbjct: 32046 gggagctcctcccgcagcgcccggatggcgt 32016
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 176 bits (89), Expect = 7e-41 Identities = 299/369 (81%) Strand = Plus / Minus Query: 259 gttggttttggagtggatgggcacccgagtgatctgaggagctcttcgacaggcaaaatc 318 |||||||||||||| |||||||| || |||||||||| ||||||| |||| ||||| | | Sbjct: 7082824 gttggttttggagtagatgggcatccaagtgatctgatgagctctacgactggcaagacc 7082765 Query: 319 ttgaacttctttcgtgaattcgtggcaacattgtccaccttatgctggtaaatcttacca 378 || || ||| || ||| ||| |||||||||| || |||||||||| || ||||| ||| Sbjct: 7082764 ttaaatttcgttggtgtgttcttggcaacattatcaaccttatgctcatagatcttccca 7082705 Query: 379 ttcttatccaacttatactctgacgtgccatcaaagcgactatgaccatcctctacgaat 438 ||||| || |||||||||||||| ||||| ||||| | | | | |||||| | | | Sbjct: 7082704 ttcttgtcaaacttatactctgaggtgccttcaaatctgccagggccatccgagagaact 7082645 Query: 439 ctagggatgccatgaacaatccaccggaccataattacattgtcgactggttgccatata 498 ||||| |||||||| |||||||| |||| ||| ||||||| ||||| || |||||||| Sbjct: 7082644 ctaggaatgccatggacaatccagcggatcatgattacatcctcgacaggctgccatatg 7082585 Query: 499 gtagcaatgtcaatccacaaggccttgaagaaaatctggccggtaaagcgcagcgcccag 558 | |||||| ||||| | || ||||||||||| || || ||||| || || |||||| Sbjct: 7082584 ctgataatgtcgatccatagtgctttgaagaaaatttgcccagtaaaccgtagagcccag 7082525 Query: 559 aatatccttttatagctatcaatacccacgaatttactgagaggatctttgaagacaata 618 ||||||||||| ||| ||||||||||| ||| ||| ||| ||||||||||||||||||| Sbjct: 7082524 aatatccttttgtagttatcaatacccgtgaaattattgataggatctttgaagacaata 7082465 Query: 619 tcttctctg 627 || |||||| Sbjct: 7082464 tcatctctg 7082456 Score = 54.0 bits (27), Expect = 7e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 664 gggagctcctcccgcagcgtccggatggcgt 694 ||||||||||||||||||| ||||||||||| Sbjct: 7077197 gggagctcctcccgcagcgcccggatggcgt 7077167
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 113 bits (57), Expect = 8e-22 Identities = 93/105 (88%) Strand = Plus / Minus Query: 523 ttgaagaaaatctggccggtaaagcgcagcgcccagaatatccttttatagctatcaata 582 |||||||| || ||||||| ||||||| |||||||||||||||||||| ||||||| Sbjct: 6653767 ttgaagaagattcggccggtgaagcgcaatgcccagaatatccttttataattatcaatg 6653708 Query: 583 cccacgaatttactgagaggatctttgaagacaatatcttctctg 627 ||| |||||||| ||||||||||||||||||||||||| |||||| Sbjct: 6653707 ccctcgaatttattgagaggatctttgaagacaatatcatctctg 6653663 Score = 83.8 bits (42), Expect = 7e-13 Identities = 85/98 (86%), Gaps = 1/98 (1%) Strand = Plus / Minus Query: 625 ctgtaaatgtcaaggctgggttcctcgcagaatacgtcagggagctcctcccgcagcgtc 684 ||||| ||||| | |||||| |||| | |||| || || ||||||||||||| ||||||| Sbjct: 6652576 ctgtagatgtcgaagctgggctccttggagaagacatcggggagctcctccctcagcgtc 6652517 Query: 685 cggatggcgtacccccatgttcacgtagtacctccgcc 722 ||||||||||| ||||||||| | |||||||||||||| Sbjct: 6652516 cggatggcgta-ccccatgttgaggtagtacctccgcc 6652480 Score = 69.9 bits (35), Expect = 1e-08 Identities = 131/163 (80%) Strand = Plus / Minus Query: 256 taagttggttttggagtggatgggcacccgagtgatctgaggagctcttcgacaggcaaa 315 ||||||||||| || ||||| ||||| || || ||||||| ||||| | ||| |||| Sbjct: 6654034 taagttggtttcggtgtggaggggcagccaagcgatctgattagctcgtggactggcagg 6653975 Query: 316 atcttgaacttctttcgtgaattcgtggcaacattgtccaccttatgctggtaaatctta 375 | ||||||||| || ||| |||| | |||||||||| ||||||||||| ||| ||||| Sbjct: 6653974 accttgaactttgttggtggattcatagcaacattgtgcaccttatgctcgtagatcttc 6653915 Query: 376 ccattcttatccaacttatactctgacgtgccatcaaagcgac 418 |||||||| || | |||||||| || | ||||||||||||| Sbjct: 6653914 ccattcttgtcgagtttatactcagaagcaccatcaaagcgac 6653872
>dbj|AP001800.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0443E05 Length = 176935 Score = 113 bits (57), Expect = 8e-22 Identities = 93/105 (88%) Strand = Plus / Minus Query: 523 ttgaagaaaatctggccggtaaagcgcagcgcccagaatatccttttatagctatcaata 582 |||||||| || ||||||| ||||||| |||||||||||||||||||| ||||||| Sbjct: 5919 ttgaagaagattcggccggtgaagcgcaatgcccagaatatccttttataattatcaatg 5860 Query: 583 cccacgaatttactgagaggatctttgaagacaatatcttctctg 627 ||| |||||||| ||||||||||||||||||||||||| |||||| Sbjct: 5859 ccctcgaatttattgagaggatctttgaagacaatatcatctctg 5815 Score = 83.8 bits (42), Expect = 7e-13 Identities = 85/98 (86%), Gaps = 1/98 (1%) Strand = Plus / Minus Query: 625 ctgtaaatgtcaaggctgggttcctcgcagaatacgtcagggagctcctcccgcagcgtc 684 ||||| ||||| | |||||| |||| | |||| || || ||||||||||||| ||||||| Sbjct: 4728 ctgtagatgtcgaagctgggctccttggagaagacatcggggagctcctccctcagcgtc 4669 Query: 685 cggatggcgtacccccatgttcacgtagtacctccgcc 722 ||||||||||| ||||||||| | |||||||||||||| Sbjct: 4668 cggatggcgta-ccccatgttgaggtagtacctccgcc 4632 Score = 69.9 bits (35), Expect = 1e-08 Identities = 131/163 (80%) Strand = Plus / Minus Query: 256 taagttggttttggagtggatgggcacccgagtgatctgaggagctcttcgacaggcaaa 315 ||||||||||| || ||||| ||||| || || ||||||| ||||| | ||| |||| Sbjct: 6186 taagttggtttcggtgtggaggggcagccaagcgatctgattagctcgtggactggcagg 6127 Query: 316 atcttgaacttctttcgtgaattcgtggcaacattgtccaccttatgctggtaaatctta 375 | ||||||||| || ||| |||| | |||||||||| ||||||||||| ||| ||||| Sbjct: 6126 accttgaactttgttggtggattcatagcaacattgtgcaccttatgctcgtagatcttc 6067 Query: 376 ccattcttatccaacttatactctgacgtgccatcaaagcgac 418 |||||||| || | |||||||| || | ||||||||||||| Sbjct: 6066 ccattcttgtcgagtttatactcagaagcaccatcaaagcgac 6024
>dbj|AP002094.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0483F08 Length = 148985 Score = 113 bits (57), Expect = 8e-22 Identities = 93/105 (88%) Strand = Plus / Minus Query: 523 ttgaagaaaatctggccggtaaagcgcagcgcccagaatatccttttatagctatcaata 582 |||||||| || ||||||| ||||||| |||||||||||||||||||| ||||||| Sbjct: 133938 ttgaagaagattcggccggtgaagcgcaatgcccagaatatccttttataattatcaatg 133879 Query: 583 cccacgaatttactgagaggatctttgaagacaatatcttctctg 627 ||| |||||||| ||||||||||||||||||||||||| |||||| Sbjct: 133878 ccctcgaatttattgagaggatctttgaagacaatatcatctctg 133834 Score = 83.8 bits (42), Expect = 7e-13 Identities = 85/98 (86%), Gaps = 1/98 (1%) Strand = Plus / Minus Query: 625 ctgtaaatgtcaaggctgggttcctcgcagaatacgtcagggagctcctcccgcagcgtc 684 ||||| ||||| | |||||| |||| | |||| || || ||||||||||||| ||||||| Sbjct: 132747 ctgtagatgtcgaagctgggctccttggagaagacatcggggagctcctccctcagcgtc 132688 Query: 685 cggatggcgtacccccatgttcacgtagtacctccgcc 722 ||||||||||| ||||||||| | |||||||||||||| Sbjct: 132687 cggatggcgta-ccccatgttgaggtagtacctccgcc 132651 Score = 69.9 bits (35), Expect = 1e-08 Identities = 131/163 (80%) Strand = Plus / Minus Query: 256 taagttggttttggagtggatgggcacccgagtgatctgaggagctcttcgacaggcaaa 315 ||||||||||| || ||||| ||||| || || ||||||| ||||| | ||| |||| Sbjct: 134205 taagttggtttcggtgtggaggggcagccaagcgatctgattagctcgtggactggcagg 134146 Query: 316 atcttgaacttctttcgtgaattcgtggcaacattgtccaccttatgctggtaaatctta 375 | ||||||||| || ||| |||| | |||||||||| ||||||||||| ||| ||||| Sbjct: 134145 accttgaactttgttggtggattcatagcaacattgtgcaccttatgctcgtagatcttc 134086 Query: 376 ccattcttatccaacttatactctgacgtgccatcaaagcgac 418 |||||||| || | |||||||| || | ||||||||||||| Sbjct: 134085 ccattcttgtcgagtttatactcagaagcaccatcaaagcgac 134043
>dbj|AK063996.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-E12, full insert sequence Length = 2143 Score = 113 bits (57), Expect = 8e-22 Identities = 93/105 (88%) Strand = Plus / Minus Query: 523 ttgaagaaaatctggccggtaaagcgcagcgcccagaatatccttttatagctatcaata 582 |||||||| || ||||||| ||||||| |||||||||||||||||||| ||||||| Sbjct: 1620 ttgaagaagattcggccggtgaagcgcaatgcccagaatatccttttataattatcaatg 1561 Query: 583 cccacgaatttactgagaggatctttgaagacaatatcttctctg 627 ||| |||||||| ||||||||||||||||||||||||| |||||| Sbjct: 1560 ccctcgaatttattgagaggatctttgaagacaatatcatctctg 1516 Score = 83.8 bits (42), Expect = 7e-13 Identities = 85/98 (86%), Gaps = 1/98 (1%) Strand = Plus / Minus Query: 625 ctgtaaatgtcaaggctgggttcctcgcagaatacgtcagggagctcctcccgcagcgtc 684 ||||| ||||| | |||||| |||| | |||| || || ||||||||||||| ||||||| Sbjct: 429 ctgtagatgtcgaagctgggctccttggagaagacatcggggagctcctccctcagcgtc 370 Query: 685 cggatggcgtacccccatgttcacgtagtacctccgcc 722 ||||||||||| ||||||||| | |||||||||||||| Sbjct: 369 cggatggcgta-ccccatgttgaggtagtacctccgcc 333 Score = 69.9 bits (35), Expect = 1e-08 Identities = 131/163 (80%) Strand = Plus / Minus Query: 256 taagttggttttggagtggatgggcacccgagtgatctgaggagctcttcgacaggcaaa 315 ||||||||||| || ||||| ||||| || || ||||||| ||||| | ||| |||| Sbjct: 1887 taagttggtttcggtgtggaggggcagccaagcgatctgattagctcgtggactggcagg 1828 Query: 316 atcttgaacttctttcgtgaattcgtggcaacattgtccaccttatgctggtaaatctta 375 | ||||||||| || ||| |||| | |||||||||| ||||||||||| ||| ||||| Sbjct: 1827 accttgaactttgttggtggattcatagcaacattgtgcaccttatgctcgtagatcttc 1768 Query: 376 ccattcttatccaacttatactctgacgtgccatcaaagcgac 418 |||||||| || | |||||||| || | ||||||||||||| Sbjct: 1767 ccattcttgtcgagtttatactcagaagcaccatcaaagcgac 1725
>ref|XM_507081.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1076_H08.5 mRNA Length = 447 Score = 54.0 bits (27), Expect = 7e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 664 gggagctcctcccgcagcgtccggatggcgt 694 ||||||||||||||||||| ||||||||||| Sbjct: 380 gggagctcctcccgcagcgcccggatggcgt 350
>dbj|AK099688.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073A18, full insert sequence Length = 2647 Score = 54.0 bits (27), Expect = 7e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 664 gggagctcctcccgcagcgtccggatggcgt 694 ||||||||||||||||||| ||||||||||| Sbjct: 445 gggagctcctcccgcagcgcccggatggcgt 415
>ref|NM_130184.2| Arabidopsis thaliana unknown protein AT2G46220 mRNA, complete cds Length = 1123 Score = 44.1 bits (22), Expect = 0.64 Identities = 31/34 (91%) Strand = Plus / Minus Query: 604 tctttgaagacaatatcttctctgtaaatgtcaa 637 |||||||| |||||||| || ||||||||||||| Sbjct: 543 tctttgaaaacaatatcatccctgtaaatgtcaa 510 Score = 42.1 bits (21), Expect = 2.5 Identities = 36/41 (87%) Strand = Plus / Minus Query: 358 ttatgctggtaaatcttaccattcttatccaacttatactc 398 ||||||| |||||||| ||||||||||| || |||||||| Sbjct: 789 ttatgctcataaatcttgccattcttatcgaatttatactc 749
>gb|AC124752.4| Mus musculus BAC clone RP23-283G18 from 13, complete sequence Length = 215435 Score = 44.1 bits (22), Expect = 0.64 Identities = 22/22 (100%) Strand = Plus / Plus Query: 86 tgctcagtggtaagtaggtata 107 |||||||||||||||||||||| Sbjct: 116743 tgctcagtggtaagtaggtata 116764
>gb|AY093803.1| Arabidopsis thaliana At2g46220/T3F17.13 mRNA, complete cds Length = 726 Score = 44.1 bits (22), Expect = 0.64 Identities = 31/34 (91%) Strand = Plus / Minus Query: 604 tctttgaagacaatatcttctctgtaaatgtcaa 637 |||||||| |||||||| || ||||||||||||| Sbjct: 359 tctttgaaaacaatatcatccctgtaaatgtcaa 326 Score = 42.1 bits (21), Expect = 2.5 Identities = 36/41 (87%) Strand = Plus / Minus Query: 358 ttatgctggtaaatcttaccattcttatccaacttatactc 398 ||||||| |||||||| ||||||||||| || |||||||| Sbjct: 605 ttatgctcataaatcttgccattcttatcgaatttatactc 565
>gb|AF361857.1| Arabidopsis thaliana At2g46220/T3F17.13 mRNA, complete cds Length = 925 Score = 44.1 bits (22), Expect = 0.64 Identities = 31/34 (91%) Strand = Plus / Minus Query: 604 tctttgaagacaatatcttctctgtaaatgtcaa 637 |||||||| |||||||| || ||||||||||||| Sbjct: 367 tctttgaaaacaatatcatccctgtaaatgtcaa 334 Score = 42.1 bits (21), Expect = 2.5 Identities = 36/41 (87%) Strand = Plus / Minus Query: 358 ttatgctggtaaatcttaccattcttatccaacttatactc 398 ||||||| |||||||| ||||||||||| || |||||||| Sbjct: 613 ttatgctcataaatcttgccattcttatcgaatttatactc 573
>gb|AF428419.1|AF428419 Arabidopsis thaliana At2g46220/T3F17.13 mRNA, complete cds Length = 1070 Score = 44.1 bits (22), Expect = 0.64 Identities = 31/34 (91%) Strand = Plus / Minus Query: 604 tctttgaagacaatatcttctctgtaaatgtcaa 637 |||||||| |||||||| || ||||||||||||| Sbjct: 522 tctttgaaaacaatatcatccctgtaaatgtcaa 489 Score = 42.1 bits (21), Expect = 2.5 Identities = 36/41 (87%) Strand = Plus / Minus Query: 358 ttatgctggtaaatcttaccattcttatccaacttatactc 398 ||||||| |||||||| ||||||||||| || |||||||| Sbjct: 768 ttatgctcataaatcttgccattcttatcgaatttatactc 728
>gb|AY050447.1| Arabidopsis thaliana At2g46220/T3F17.13 mRNA, complete cds Length = 1041 Score = 44.1 bits (22), Expect = 0.64 Identities = 31/34 (91%) Strand = Plus / Minus Query: 604 tctttgaagacaatatcttctctgtaaatgtcaa 637 |||||||| |||||||| || ||||||||||||| Sbjct: 483 tctttgaaaacaatatcatccctgtaaatgtcaa 450 Score = 42.1 bits (21), Expect = 2.5 Identities = 36/41 (87%) Strand = Plus / Minus Query: 358 ttatgctggtaaatcttaccattcttatccaacttatactc 398 ||||||| |||||||| ||||||||||| || |||||||| Sbjct: 729 ttatgctcataaatcttgccattcttatcgaatttatactc 689
>emb|BX820165.1|CNS0A8H9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS84ZF07 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 836 Score = 44.1 bits (22), Expect = 0.64 Identities = 31/34 (91%) Strand = Plus / Minus Query: 604 tctttgaagacaatatcttctctgtaaatgtcaa 637 |||||||| |||||||| || ||||||||||||| Sbjct: 354 tctttgaaaacaatatcatccctgtaaatgtcaa 321 Score = 42.1 bits (21), Expect = 2.5 Identities = 36/41 (87%) Strand = Plus / Minus Query: 358 ttatgctggtaaatcttaccattcttatccaacttatactc 398 ||||||| |||||||| ||||||||||| || |||||||| Sbjct: 600 ttatgctcataaatcttgccattcttatcgaatttatactc 560
>gb|AC008309.8| Drosophila melanogaster clone BACR06L13, complete sequence Length = 163325 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 15 acatctacaactgtgttcttt 35 ||||||||||||||||||||| Sbjct: 41565 acatctacaactgtgttcttt 41585
>gb|AC008308.9| Drosophila melanogaster clone BACR10M16, complete sequence Length = 196423 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 15 acatctacaactgtgttcttt 35 ||||||||||||||||||||| Sbjct: 40278 acatctacaactgtgttcttt 40258
>gb|AC164563.4| Mus musculus BAC clone RP23-130D15 from chromosome 6, complete sequence Length = 202948 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 47 tacagctgtacacaaatacagcggt 71 |||||| |||||||||||||||||| Sbjct: 167958 tacagcagtacacaaatacagcggt 167982
>gb|AC005397.3| Arabidopsis thaliana chromosome 2 clone T3F17 map CIC02E07, complete sequence Length = 110149 Score = 42.1 bits (21), Expect = 2.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 358 ttatgctggtaaatcttaccattcttatccaacttatactc 398 ||||||| |||||||| ||||||||||| || |||||||| Sbjct: 43132 ttatgctcataaatcttgccattcttatcgaatttatactc 43172
>gb|AE003734.3| Drosophila melanogaster chromosome 3R, section 72 of 118 of the complete sequence Length = 250533 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 15 acatctacaactgtgttcttt 35 ||||||||||||||||||||| Sbjct: 82024 acatctacaactgtgttcttt 82044
>gb|AC134529.6| Mus musculus BAC clone RP24-503A2 from chromosome 6, complete sequence Length = 166392 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 47 tacagctgtacacaaatacagcggt 71 |||||| |||||||||||||||||| Sbjct: 35722 tacagcagtacacaaatacagcggt 35746
>emb|X85039.1|DMHSROMEG D.melanogaster hsr-omega gene Length = 845 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 15 acatctacaactgtgttcttt 35 ||||||||||||||||||||| Sbjct: 69 acatctacaactgtgttcttt 89
>gb|AC118206.11| Mus musculus chromosome 3, clone RP24-159J16, complete sequence Length = 255036 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 tgagtgagattatcttgaag 255 |||||||||||||||||||| Sbjct: 51706 tgagtgagattatcttgaag 51725
>emb|AL023283.6|HS238G2 Human DNA sequence from clone RP1-238G2 on chromosome 6q23.2-25.2, complete sequence Length = 118904 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 aaaagcagaaaggcaaactt 133 |||||||||||||||||||| Sbjct: 1830 aaaagcagaaaggcaaactt 1849
>gb|AC010023.6| Drosophila melanogaster 3L BAC RP98-19G23 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 161175 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 agccgaaaagcagaaaggca 128 |||||||||||||||||||| Sbjct: 103957 agccgaaaagcagaaaggca 103938
>gb|AC008250.23| Homo sapiens 12 BAC RP11-729I10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 141132 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 aagtaagttggttttggagt 272 |||||||||||||||||||| Sbjct: 82345 aagtaagttggttttggagt 82326
>gb|AC140372.3| Mus musculus BAC clone RP23-185B17 from chromosome 3, complete sequence Length = 180084 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 tgagtgagattatcttgaag 255 |||||||||||||||||||| Sbjct: 107550 tgagtgagattatcttgaag 107569
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 306 gacaggcaaaatcttgaact 325 |||||||||||||||||||| Sbjct: 26085099 gacaggcaaaatcttgaact 26085080
>dbj|AP004260.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0011H09 Length = 147992 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 306 gacaggcaaaatcttgaact 325 |||||||||||||||||||| Sbjct: 118661 gacaggcaaaatcttgaact 118642
>emb|CR450791.5| Zebrafish DNA sequence from clone CH211-39A7 in linkage group 19, complete sequence Length = 72657 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 agtgagattatcttgaagta 257 |||||||||||||||||||| Sbjct: 58620 agtgagattatcttgaagta 58639
>gb|AE003545.3| Drosophila melanogaster chromosome 3L, section 40 of 83 of the complete sequence Length = 282115 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 agccgaaaagcagaaaggca 128 |||||||||||||||||||| Sbjct: 46496 agccgaaaagcagaaaggca 46477
>emb|AL732553.11| Mouse DNA sequence from clone RP23-144L20 on chromosome 4, complete sequence Length = 33734 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 agttggttttggagtggatg 277 |||||||||||||||||||| Sbjct: 17246 agttggttttggagtggatg 17227 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,220,650 Number of Sequences: 3902068 Number of extensions: 5220650 Number of successful extensions: 88680 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 88536 Number of HSP's gapped (non-prelim): 139 length of query: 728 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 705 effective length of database: 17,143,297,704 effective search space: 12086024881320 effective search space used: 12086024881320 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)