>SNX1_RAT (Q99N27) Sorting nexin-1|
          Length = 522

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = -1

Query: 698 KIKEKARWPQPLKQLHAVVSNIL---KEVDFNTATLADILKKLGDHFDMDLMDRKSEVKR 528
           K++E     Q L++LHAVV  ++   KE+  NTA  A  L  LG   D   + R      
Sbjct: 312 KLQEVECEEQRLRKLHAVVETLVNHRKELALNTALFAKSLAMLGSSEDNTALSRALSQLA 371

Query: 527 IIEEVINSM 501
            +EE I  +
Sbjct: 372 EVEEKIEQL 380

>SNX1_MOUSE (Q9WV80) Sorting nexin-1|
          Length = 522

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = -1

Query: 698 KIKEKARWPQPLKQLHAVVSNIL---KEVDFNTATLADILKKLGDHFDMDLMDRKSEVKR 528
           K++E     Q L++LHAVV  ++   KE+  NTA  A  L  LG   D   + R      
Sbjct: 312 KLQEVECEEQRLRKLHAVVETLVNHRKELALNTALFAKSLAMLGSSEDNTALSRALSQLA 371

Query: 527 IIEEVINSM 501
            +EE I  +
Sbjct: 372 EVEEKIEQL 380

>SNX1_HUMAN (Q13596) Sorting nexin-1|
          Length = 522

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = -1

Query: 698 KIKEKARWPQPLKQLHAVVSNIL---KEVDFNTATLADILKKLGDHFDMDLMDRKSEVKR 528
           K++E     Q L++LHAVV  ++   KE+  NTA  A  L  LG   D   + R      
Sbjct: 312 KLQEVECEEQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLA 371

Query: 527 IIEEVINSM 501
            +EE I  +
Sbjct: 372 EVEEKIEQL 380

>TRYB1_RAT (P27435) Tryptase precursor (EC 3.4.21.59) (Mast cell protease 7)|
           (MMCP-7) (Tryptase alpha/beta-1) (Tryptase, skin)
          Length = 273

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
 Frame = +2

Query: 284 PKWLLRCHHCTG------EKQRQQPRRTLDKYRISHLVRPAQLISHPSLH 415
           P+W+L   HC G       K R Q R+    Y   HL+  +Q+ISHP  +
Sbjct: 64  PQWVLTAAHCVGPNKADPNKLRVQLRKQYLYYH-DHLLTVSQIISHPDFY 112

>NU4M_CAURH (O03707) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 4) (Fragment)
          Length = 231

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +1

Query: 502 MLLITSSMMRFTSDFLSMRSMSKWSP-NFLRMSARVAVLKSTSFNMLLTT 648
           M + T  MM FTS+FL + S+  W P   + +S  + +    S ++ L+T
Sbjct: 142 MNIATPPMMNFTSEFLILSSLFNWCPTTIILLSLSILITSIYSLHIFLST 191

>TRYB1_MOUSE (Q02844) Tryptase precursor (EC 3.4.21.59) (Mast cell protease 7)|
           (MMCP-7) (Tryptase alpha/beta-1)
          Length = 273

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
 Frame = +2

Query: 284 PKWLLRCHHCTG------EKQRQQPRRTLDKYRISHLVRPAQLISHPSLH 415
           P+W+L   HC G       K R Q R+    Y   HL+  +Q+I+HP  +
Sbjct: 64  PQWVLTAAHCVGPDVADPNKVRVQLRKQYLYYH-DHLMTVSQIITHPDFY 112

>LY6D_MOUSE (P35459) Lymphocyte antigen Ly-6D precursor (Thymocyte B-cell|
           antigen) (ThB)
          Length = 127

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 263 ILALPRPPKWLLRCHHCTGEKQRQQPR 343
           +LA+   P W LRCH CT     + P+
Sbjct: 10  VLAVATSPAWALRCHVCTNSANCKNPQ 36

>XKR4_RAT (Q5GH59) XK-related protein 4|
          Length = 647

 Score = 30.0 bits (66), Expect = 7.4
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +1

Query: 172 VHDQQLRDYRSITPSQAQQPGMQGHQMVNKHSSTAQATKMVVAVPSLYRRKTAPATKKN 348
           VHD    D  + T S  QQPG     +V+  S+  +      A PS  +R+ + A+K N
Sbjct: 166 VHDFSTEDSATTTASTCQQPGADCKTVVSSGSAAGEGE----ARPSTPQRQASNASKSN 220

>TRYT_MERUN (P50342) Mast cell tryptase precursor (EC 3.4.21.59)|
          Length = 270

 Score = 30.0 bits (66), Expect = 7.4
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
 Frame = +2

Query: 284 PKWLLRCHHCTG------EKQRQQPRRTLDKYRISHLVRPAQLISHPSLH 415
           P+W+L   HC G       K R Q R+    Y   HL+  +++I+HP+ +
Sbjct: 61  PQWVLTAAHCVGPTIADPNKVRVQLRKQYLYYH-DHLLAVSRIITHPTFY 109

>UREE_BACSB (Q07401) Urease accessory protein ureE|
          Length = 148

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
 Frame = +1

Query: 157 DQTAIVHDQQLRDYRSITPSQAQQPGMQGHQMVNKH-SSTAQATKMVV----AVPSLYRR 321
           D   IV      D  +I P+  QQ G   HQ+ N+H  +  +  +M+V     V  L ++
Sbjct: 65  DHNMIVISVLEDDVLTIKPTSMQQMGEIAHQLGNRHLPAQFEGNEMIVQYDYLVEELLQK 124

Query: 322 KTAPATKKNTRQIQ 363
            + P T++N +  Q
Sbjct: 125 LSIPFTRENRKMKQ 138


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,814,747
Number of Sequences: 219361
Number of extensions: 1787928
Number of successful extensions: 4548
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4544
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7309604013
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)