>SSRA_ARATH (P45434) Translocon-associated protein alpha subunit precursor|
           (TRAP-alpha) (Signal sequence receptor alpha subunit)
           (SSR-alpha)
          Length = 258

 Score =  136 bits (343), Expect = 4e-32
 Identities = 67/123 (54%), Positives = 85/123 (69%)
 Frame = -1

Query: 615 TVQSFYNASVPVSVQATFPYTFAVSKFLQPGAYDLVGYIVYEIDQHPYQNVFYNGTIXXX 436
           T+    NAS+P S+QATFPY FAVS++LQPGA+DLVGYI+Y+++  PYQ+VFYNGTI   
Sbjct: 121 TMLRLNNASIPTSLQATFPYIFAVSQYLQPGAFDLVGYIIYDVEGKPYQSVFYNGTIEVV 180

Query: 435 XXXXXXXXXXVFXXXXXXXXXXXXXLWAYGQVQQLSKKTKKGPKVELGTGTTDANMDEWL 256
                     VF             LWAY QVQ+L+KKTKK  KVE+GT +T+A++DEWL
Sbjct: 181 ESGGLLSGESVFLLTLGIGLLLLLGLWAYSQVQRLTKKTKKVSKVEVGTRSTEASLDEWL 240

Query: 255 EGT 247
           EGT
Sbjct: 241 EGT 243

>PIT1_CHICK (Q9YGL7) Pituitary-specific positive transcription factor 1 (Pit-1)|
           (Growth hormone factor 1) (GHF-1)
          Length = 363

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -2

Query: 605 VSTMHQFLSLCKQPFPIHLL*ANSCSLEH 519
           VST+   L+ C   FP H L A+SC+L H
Sbjct: 131 VSTLQSSLTPCLYKFPEHALSASSCALGH 159


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,201,121
Number of Sequences: 219361
Number of extensions: 1886359
Number of successful extensions: 5384
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5382
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5538924943
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)