ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags23c12 |
|---|---|
| Clone Library Name | barley_pub |
>NOP56_MOUSE (Q9D6Z1) Nucleolar protein Nop56 (Nucleolar protein 5A)| Length = 580 Score = 230 bits (587), Expect = 3e-60 Identities = 112/145 (77%), Positives = 133/145 (91%) Frame = -1 Query: 717 LYEYLVTKMNDIAPNLTSLIGEMVGARLISHAGSLSNLAKCPASTLQILGAEKALFRALK 538 L+ YL +KM+ +AP+L++LIGE VGARLI+HAGSL+NLAK PAST+QILGAEKALFRALK Sbjct: 281 LHTYLRSKMSQVAPSLSALIGEAVGARLIAHAGSLTNLAKYPASTVQILGAEKALFRALK 340 Query: 537 TRGNTPKYGLIFHSSFIGRASTKNKGRMARYLANKCSIASRIDCYSDMSSSIFGEKLREQ 358 TRGNTPKYGLIFHS+FIGRA+ KNKGR++RYLANKCSIASRIDC+S++ +S+FGEKLREQ Sbjct: 341 TRGNTPKYGLIFHSTFIGRAAAKNKGRISRYLANKCSIASRIDCFSEVPTSVFGEKLREQ 400 Query: 357 VEERLDFYDKGVAPRKNLDVMKAAI 283 VEERL FY+ G PRKNLDVMK A+ Sbjct: 401 VEERLSFYETGEIPRKNLDVMKEAV 425
>NOP56_PONPY (Q5RA29) Nucleolar protein Nop56 (Nucleolar protein 5A)| Length = 594 Score = 229 bits (585), Expect = 5e-60 Identities = 112/145 (77%), Positives = 133/145 (91%) Frame = -1 Query: 717 LYEYLVTKMNDIAPNLTSLIGEMVGARLISHAGSLSNLAKCPASTLQILGAEKALFRALK 538 L+ YL +KM+ +AP+L++LIGE VGARLI+HAGSL+NLAK PAST+QILGAEKALFRALK Sbjct: 281 LHTYLRSKMSQVAPSLSALIGEAVGARLIAHAGSLTNLAKYPASTVQILGAEKALFRALK 340 Query: 537 TRGNTPKYGLIFHSSFIGRASTKNKGRMARYLANKCSIASRIDCYSDMSSSIFGEKLREQ 358 TRGNTPKYGLIFHS+FIGRA+ KNKGR++RYLANKCSIASRIDC+S++ +S+FGEKLREQ Sbjct: 341 TRGNTPKYGLIFHSTFIGRAAAKNKGRISRYLANKCSIASRIDCFSEVPTSVFGEKLREQ 400 Query: 357 VEERLDFYDKGVAPRKNLDVMKAAI 283 VEERL FY+ G PRKNLDVMK A+ Sbjct: 401 VEERLSFYETGEIPRKNLDVMKEAM 425
>NOP56_MACFA (Q95K50) Nucleolar protein Nop56 (Nucleolar protein 5A)| Length = 594 Score = 229 bits (585), Expect = 5e-60 Identities = 112/145 (77%), Positives = 133/145 (91%) Frame = -1 Query: 717 LYEYLVTKMNDIAPNLTSLIGEMVGARLISHAGSLSNLAKCPASTLQILGAEKALFRALK 538 L+ YL +KM+ +AP+L++LIGE VGARLI+HAGSL+NLAK PAST+QILGAEKALFRALK Sbjct: 281 LHTYLRSKMSQVAPSLSALIGEAVGARLIAHAGSLTNLAKYPASTVQILGAEKALFRALK 340 Query: 537 TRGNTPKYGLIFHSSFIGRASTKNKGRMARYLANKCSIASRIDCYSDMSSSIFGEKLREQ 358 TRGNTPKYGLIFHS+FIGRA+ KNKGR++RYLANKCSIASRIDC+S++ +S+FGEKLREQ Sbjct: 341 TRGNTPKYGLIFHSTFIGRAAAKNKGRISRYLANKCSIASRIDCFSEVPTSVFGEKLREQ 400 Query: 357 VEERLDFYDKGVAPRKNLDVMKAAI 283 VEERL FY+ G PRKNLDVMK A+ Sbjct: 401 VEERLSFYETGEIPRKNLDVMKEAM 425
>NOP56_HUMAN (O00567) Nucleolar protein Nop56 (Nucleolar protein 5A)| Length = 594 Score = 229 bits (585), Expect = 5e-60 Identities = 112/145 (77%), Positives = 133/145 (91%) Frame = -1 Query: 717 LYEYLVTKMNDIAPNLTSLIGEMVGARLISHAGSLSNLAKCPASTLQILGAEKALFRALK 538 L+ YL +KM+ +AP+L++LIGE VGARLI+HAGSL+NLAK PAST+QILGAEKALFRALK Sbjct: 281 LHTYLRSKMSQVAPSLSALIGEAVGARLIAHAGSLTNLAKYPASTVQILGAEKALFRALK 340 Query: 537 TRGNTPKYGLIFHSSFIGRASTKNKGRMARYLANKCSIASRIDCYSDMSSSIFGEKLREQ 358 TRGNTPKYGLIFHS+FIGRA+ KNKGR++RYLANKCSIASRIDC+S++ +S+FGEKLREQ Sbjct: 341 TRGNTPKYGLIFHSTFIGRAAAKNKGRISRYLANKCSIASRIDCFSEVPTSVFGEKLREQ 400 Query: 357 VEERLDFYDKGVAPRKNLDVMKAAI 283 VEERL FY+ G PRKNLDVMK A+ Sbjct: 401 VEERLSFYETGEIPRKNLDVMKEAM 425
>YZVL_CAEEL (Q21276) Hypothetical protein K07C5.4 in chromosome V| Length = 486 Score = 213 bits (542), Expect = 5e-55 Identities = 105/180 (58%), Positives = 136/180 (75%) Frame = -1 Query: 717 LYEYLVTKMNDIAPNLTSLIGEMVGARLISHAGSLSNLAKCPASTLQILGAEKALFRALK 538 L+EY+ +M+ AP+L++LIGE VGARLISHAGSL+NLAK PAST+QILGAEKALFRALK Sbjct: 287 LHEYIKDRMDHCAPSLSALIGEQVGARLISHAGSLTNLAKYPASTVQILGAEKALFRALK 346 Query: 537 TRGNTPKYGLIFHSSFIGRASTKNKGRMARYLANKCSIASRIDCYSDMSSSIFGEKLREQ 358 TR NTPKYGL+FHSSFIG+A TKNKGR++RYLANKCSIA+R+DC+S+ S +GE LR+Q Sbjct: 347 TRSNTPKYGLLFHSSFIGKAGTKNKGRVSRYLANKCSIAARVDCFSETPVSTYGEFLRQQ 406 Query: 357 VEERLDFYDKGVAPRKNLDVMKAAIDGLTNTEDDDGKENGDASVXXXXXXXXKAEANGDA 178 VE+RL+++ G P+KN+DVMK A + ++ K+ A+ A +A Sbjct: 407 VEDRLEYFTSGTVPKKNIDVMKEAEEAAVEVKEKVIKKKKKAAKKAKRLAEESVTATAEA 466
>SIK1_YEAST (Q12460) Protein SIK1 (Nucleolar protein NOP56)| Length = 504 Score = 196 bits (498), Expect = 6e-50 Identities = 96/146 (65%), Positives = 123/146 (84%) Frame = -1 Query: 717 LYEYLVTKMNDIAPNLTSLIGEMVGARLISHAGSLSNLAKCPASTLQILGAEKALFRALK 538 LY+YL KM+ +APNL+ LIGE++GARLISHAGSL+NL+K AST+QILGAEKALFRALK Sbjct: 288 LYDYLCEKMHTVAPNLSELIGEVIGARLISHAGSLTNLSKQAASTVQILGAEKALFRALK 347 Query: 537 TRGNTPKYGLIFHSSFIGRASTKNKGRMARYLANKCSIASRIDCYSDMSSSIFGEKLREQ 358 T+GNTPKYGLI+HS FI +AS KNKGR++RYLANKCS+ASRID YS+ S++FG L++Q Sbjct: 348 TKGNTPKYGLIYHSGFISKASAKNKGRISRYLANKCSMASRIDNYSEEPSNVFGSVLKKQ 407 Query: 357 VEERLDFYDKGVAPRKNLDVMKAAID 280 VE+RL+FY+ G KN ++ A++ Sbjct: 408 VEQRLEFYNTGKPTLKNELAIQEAME 433
>Y5712_ARATH (O04658) Hypothetical protein At5g27120| Length = 439 Score = 151 bits (382), Expect = 2e-36 Identities = 77/125 (61%), Positives = 97/125 (77%) Frame = -1 Query: 717 LYEYLVTKMNDIAPNLTSLIGEMVGARLISHAGSLSNLAKCPASTLQILGAEKALFRALK 538 LY+YL ++MN IAPNLT+L+GE+VGARLISH GSL NLAK P ST+QILGAEKALFRALK Sbjct: 269 LYDYLKSRMNTIAPNLTALVGELVGARLISHGGSLLNLAKQPGSTVQILGAEKALFRALK 328 Query: 537 TRGNTPKYGLIFHSSFIGRASTKNKGRMARYLANKCSIASRIDCYSDMSSSIFGEKLREQ 358 T+ TPKYGLIFH+S +G+A+ KNKG+++R LA K +A R D D + G + R + Sbjct: 329 TKHATPKYGLIFHASVVGQAAPKNKGKISRSLAAKSVLAIRCDALGDSQDNTMGVENRLK 388 Query: 357 VEERL 343 +E RL Sbjct: 389 LEARL 393
>NOP5_RAT (Q9QZ86) Nucleolar protein NOP5 (Nucleolar protein 5)| (Nopp140-associated protein) Length = 534 Score = 148 bits (373), Expect = 2e-35 Identities = 77/133 (57%), Positives = 102/133 (76%), Gaps = 1/133 (0%) Frame = -1 Query: 717 LYEYLVTKMNDIAPNLTSLIGEMVGARLISHAGSLSNLAKCPASTLQILGAEKALFRALK 538 LYEYL +M IAPN+T ++GE+VGARLI+HAGSL NLAK AST+QILGAEKALFRALK Sbjct: 271 LYEYLQNRMMAIAPNVTVMVGELVGARLIAHAGSLLNLAKHAASTVQILGAEKALFRALK 330 Query: 537 TRGNTPKYGLIFHSSFIGRASTKNKGRMARYLANKCSIASRIDCYSDMSSSIFGEKLREQ 358 +R +TPKYGLI+H+S +G+ S K+KG+++R LA K +A R D + + SSS G + R + Sbjct: 331 SRRDTPKYGLIYHASLVGQTSPKHKGKISRMLAAKTVLAIRYDAFGEDSSSAMGAENRAK 390 Query: 357 VEERLDFY-DKGV 322 +E RL D+G+ Sbjct: 391 LEARLRILEDRGI 403
>NOP5_HUMAN (Q9Y2X3) Nucleolar protein NOP5 (Nucleolar protein 5) (NOP58)| Length = 529 Score = 147 bits (372), Expect = 2e-35 Identities = 77/133 (57%), Positives = 102/133 (76%), Gaps = 1/133 (0%) Frame = -1 Query: 717 LYEYLVTKMNDIAPNLTSLIGEMVGARLISHAGSLSNLAKCPASTLQILGAEKALFRALK 538 LYEYL +M IAPN+T ++GE+VGARLI+HAGSL NLAK AST+QILGAEKALFRALK Sbjct: 271 LYEYLQNRMMAIAPNVTVMVGELVGARLIAHAGSLLNLAKHAASTVQILGAEKALFRALK 330 Query: 537 TRGNTPKYGLIFHSSFIGRASTKNKGRMARYLANKCSIASRIDCYSDMSSSIFGEKLREQ 358 +R +TPKYGLI+H+S +G+ S K+KG+++R LA K +A R D + + SSS G + R + Sbjct: 331 SRRDTPKYGLIYHASLVGQTSPKHKGKISRMLAAKTVLAIRYDAFGEDSSSAMGVENRAK 390 Query: 357 VEERL-DFYDKGV 322 +E RL D+G+ Sbjct: 391 LEARLRTLEDRGI 403
>NOP58_YEAST (Q12499) Nucleolar protein NOP58 (Nucleolar protein NOP5)| Length = 511 Score = 141 bits (355), Expect = 2e-33 Identities = 73/127 (57%), Positives = 97/127 (76%), Gaps = 2/127 (1%) Frame = -1 Query: 717 LYEYLVTKMNDIAPNLTSLIGEMVGARLISHAGSLSNLAKCPASTLQILGAEKALFRALK 538 L YL +M IAPNLT L+GE+VGARLI+H+GSL +LAK PAST+QILGAEKALFRALK Sbjct: 272 LSNYLSARMKAIAPNLTQLVGELVGARLIAHSGSLISLAKSPASTIQILGAEKALFRALK 331 Query: 537 TRGNTPKYGLIFHSSFIGRASTKNKGRMARYLANKCSIASRIDCYSD--MSSSIFGEKLR 364 T+ +TPKYGL++H+S +G+A+ KNKG++AR LA K +++ R D ++ S G + R Sbjct: 332 TKHDTPKYGLLYHASLVGQATGKNKGKIARVLAAKAAVSLRYDALAEDRDDSGDIGLESR 391 Query: 363 EQVEERL 343 +VE RL Sbjct: 392 AKVENRL 398
>Y5714_ARATH (O04656) Hypothetical protein At5g27140| Length = 435 Score = 134 bits (336), Expect = 4e-31 Identities = 68/125 (54%), Positives = 93/125 (74%) Frame = -1 Query: 717 LYEYLVTKMNDIAPNLTSLIGEMVGARLISHAGSLSNLAKCPASTLQILGAEKALFRALK 538 L + L KMN IAPNLT+L+GE+VGARLISH GSL NL+K P ST+QILGAEK L++ALK Sbjct: 226 LCDDLKNKMNKIAPNLTALVGELVGARLISHCGSLWNLSKLPWSTIQILGAEKTLYKALK 285 Query: 537 TRGNTPKYGLIFHSSFIGRASTKNKGRMARYLANKCSIASRIDCYSDMSSSIFGEKLREQ 358 T+ TPKYGLI+H+ + +A+ +NKG++AR LA K ++A R D + + + G + R + Sbjct: 286 TKQATPKYGLIYHAPLVRQAAPENKGKIARSLAAKSALAIRCDAFGNGQDNTMGVESRLK 345 Query: 357 VEERL 343 +E RL Sbjct: 346 LEARL 350
>Y694_METJA (Q58105) Hypothetical protein MJ0694| Length = 414 Score = 106 bits (264), Expect = 8e-23 Identities = 62/136 (45%), Positives = 82/136 (60%) Frame = -1 Query: 717 LYEYLVTKMNDIAPNLTSLIGEMVGARLISHAGSLSNLAKCPASTLQILGAEKALFRALK 538 LY YL MN+ APN+T L G +GARLI AG L LAK PAST+Q+LGAEKALF L+ Sbjct: 235 LYNYLEKLMNEEAPNITKLAGVSLGARLIGLAGGLEKLAKMPASTIQVLGAEKALFAHLR 294 Query: 537 TRGNTPKYGLIFHSSFIGRASTKNKGRMARYLANKCSIASRIDCYSDMSSSIFGEKLREQ 358 PK+G+I++ I + +G++AR LA K +IA+R D D + EKL ++ Sbjct: 295 MGVEPPKHGIIYNHPLIQGSPHWQRGKIARALACKLAIAARADYVGDYIADELLEKLNKR 354 Query: 357 VEERLDFYDKGVAPRK 310 VEE Y K +K Sbjct: 355 VEEIRRKYPKPPKKKK 370
>PRP31_MOUSE (Q8CCF0) U4/U6 small nuclear ribonucleoprotein Prp31 (Pre-mRNA| processing factor 31) (U4/U6 snRNP 61 kDa protein) (Protein 61K) Length = 499 Score = 93.2 bits (230), Expect = 7e-19 Identities = 45/147 (30%), Positives = 85/147 (57%) Frame = -1 Query: 717 LYEYLVTKMNDIAPNLTSLIGEMVGARLISHAGSLSNLAKCPASTLQILGAEKALFRALK 538 +YEY+ ++M+ IAPNL+ +IG A+++ AG L+NL+K PA + +LGA++ Sbjct: 204 IYEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKMPACNIMLLGAQRKTLSGFS 263 Query: 537 TRGNTPKYGLIFHSSFIGRASTKNKGRMARYLANKCSIASRIDCYSDMSSSIFGEKLREQ 358 + P G I+HS + + + AR +A KC++A+R+D + + + G +L+++ Sbjct: 264 STSVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDE 323 Query: 357 VEERLDFYDKGVAPRKNLDVMKAAIDG 277 +E + D + + P K + + A +DG Sbjct: 324 IERKFDKWQE-PPPVKQVKPLPAPLDG 349
>PRP31_HUMAN (Q8WWY3) U4/U6 small nuclear ribonucleoprotein Prp31 (Pre-mRNA| processing factor 31) (U4/U6 snRNP 61 kDa protein) (hPrp31) (Protein 61K) (Serologically defined breast cancer antigen NY-BR-99) Length = 499 Score = 93.2 bits (230), Expect = 7e-19 Identities = 45/147 (30%), Positives = 85/147 (57%) Frame = -1 Query: 717 LYEYLVTKMNDIAPNLTSLIGEMVGARLISHAGSLSNLAKCPASTLQILGAEKALFRALK 538 +YEY+ ++M+ IAPNL+ +IG A+++ AG L+NL+K PA + +LGA++ Sbjct: 204 IYEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKMPACNIMLLGAQRKTLSGFS 263 Query: 537 TRGNTPKYGLIFHSSFIGRASTKNKGRMARYLANKCSIASRIDCYSDMSSSIFGEKLREQ 358 + P G I+HS + + + AR +A KC++A+R+D + + + G +L+++ Sbjct: 264 STSVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDE 323 Query: 357 VEERLDFYDKGVAPRKNLDVMKAAIDG 277 +E + D + + P K + + A +DG Sbjct: 324 IERKFDKWQE-PPPVKQVKPLPAPLDG 349
>PRP31_XENTR (Q6NVP6) U4/U6 small nuclear ribonucleoprotein Prp31 (Pre-mRNA| processing factor 31) Length = 498 Score = 91.7 bits (226), Expect = 2e-18 Identities = 45/147 (30%), Positives = 83/147 (56%) Frame = -1 Query: 717 LYEYLVTKMNDIAPNLTSLIGEMVGARLISHAGSLSNLAKCPASTLQILGAEKALFRALK 538 +YEY+ ++M+ IAPNL+ ++G A+++ AG L+NL+K PA + +LGA++ Sbjct: 203 IYEYVESRMSFIAPNLSIIVGASTAAKIMGIAGGLTNLSKMPACNVMLLGAQRKTLSGFS 262 Query: 537 TRGNTPKYGLIFHSSFIGRASTKNKGRMARYLANKCSIASRIDCYSDMSSSIFGEKLREQ 358 + P G I+HS + + AR ++ KC++A+R+D + + S G L+E+ Sbjct: 263 STSVLPHTGYIYHSDIVQSLPPDLHRKAARLVSAKCTLAARVDSFHESSEGKVGYDLKEE 322 Query: 357 VEERLDFYDKGVAPRKNLDVMKAAIDG 277 +E + D + + P K + + A +DG Sbjct: 323 IERKFDKWQE-PPPVKQVKPLPAPLDG 348
>PRP31_XENLA (Q5U5C5) U4/U6 small nuclear ribonucleoprotein Prp31 (Pre-mRNA| processing factor 31) Length = 498 Score = 91.7 bits (226), Expect = 2e-18 Identities = 45/147 (30%), Positives = 83/147 (56%) Frame = -1 Query: 717 LYEYLVTKMNDIAPNLTSLIGEMVGARLISHAGSLSNLAKCPASTLQILGAEKALFRALK 538 +YEY+ ++M+ IAPNL+ ++G A+++ AG L+NL+K PA + +LGA++ Sbjct: 203 IYEYVESRMSFIAPNLSIIVGASTAAKIMGIAGGLTNLSKMPACNVMLLGAQRKTLTGFS 262 Query: 537 TRGNTPKYGLIFHSSFIGRASTKNKGRMARYLANKCSIASRIDCYSDMSSSIFGEKLREQ 358 + P G I+HS + + + AR ++ KC++ASR+D + + G L+E+ Sbjct: 263 STSVLPHTGYIYHSEIVQSLPSDLHRKAARLVSAKCTLASRVDSFHENPEGKIGYDLKEE 322 Query: 357 VEERLDFYDKGVAPRKNLDVMKAAIDG 277 +E + D + + P K + + A +DG Sbjct: 323 IERKFDKWQE-PPPVKQVKPLPAPLDG 348
>PRP31_BRARE (Q7SXM7) U4/U6 small nuclear ribonucleoprotein Prp31 (Pre-mRNA| processing factor 31) Length = 508 Score = 91.7 bits (226), Expect = 2e-18 Identities = 45/147 (30%), Positives = 83/147 (56%) Frame = -1 Query: 717 LYEYLVTKMNDIAPNLTSLIGEMVGARLISHAGSLSNLAKCPASTLQILGAEKALFRALK 538 +YEY+ ++M+ IAPNL+ ++G A+++ AG L+NL+K PA L +LGA++ Sbjct: 215 IYEYVESRMSFIAPNLSIIVGASTAAKIMGVAGGLTNLSKMPACNLMLLGAQRRTLSGFS 274 Query: 537 TRGNTPKYGLIFHSSFIGRASTKNKGRMARYLANKCSIASRIDCYSDMSSSIFGEKLREQ 358 + P G I+H + + + AR ++ KC++ASR+D + + + G L+E+ Sbjct: 275 STSLLPHTGYIYHCDVVQTLPPDLRRKAARLVSAKCTLASRVDSFHESADGKVGYDLKEE 334 Query: 357 VEERLDFYDKGVAPRKNLDVMKAAIDG 277 +E + D + + P K + + A +DG Sbjct: 335 IERKFDKWQE-PPPVKQVKPLPAPLDG 360
>PRP31_SCHPO (O42904) Pre-mRNA-splicing factor 31| Length = 518 Score = 68.2 bits (165), Expect = 2e-11 Identities = 35/126 (27%), Positives = 65/126 (51%) Frame = -1 Query: 717 LYEYLVTKMNDIAPNLTSLIGEMVGARLISHAGSLSNLAKCPASTLQILGAEKALFRALK 538 + EY+ ++++ +APNL++++G A LI AG L+ L K PA L LG + + Sbjct: 228 IIEYVQSRISVVAPNLSAVVGSTTAANLIGIAGGLTRLGKFPACNLPALGKRRLTTIGIN 287 Query: 537 TRGNTPKYGLIFHSSFIGRASTKNKGRMARYLANKCSIASRIDCYSDMSSSIFGEKLREQ 358 + YG ++ S + + + + R A K ++A+RID + FG R++ Sbjct: 288 NPAVSGDYGFLYMSEIVQKTPPDVRKQAIRMTAAKVALAARIDSIHEYPDGSFGISARKE 347 Query: 357 VEERLD 340 VE +++ Sbjct: 348 VERKIE 353
>PRP31_YEAST (P49704) Pre-mRNA-splicing factor 31| Length = 494 Score = 58.9 bits (141), Expect = 1e-08 Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 1/102 (0%) Frame = -1 Query: 711 EYLVTKMNDIAPNLTSLIGEMVGARLISHAGSLSNLAKCPASTLQILGAEKALFRALKT- 535 +Y+ +K++ IAPN+ L+G + A+LI+HAG + ++ P+ + +G K L L T Sbjct: 216 QYIASKISIIAPNVCFLVGPEIAAQLIAHAGGVLEFSRIPSCNIASIGKNKHLSHELHTL 275 Query: 534 RGNTPKYGLIFHSSFIGRASTKNKGRMARYLANKCSIASRID 409 + G +F S I + +M R L K S+A+R+D Sbjct: 276 ESGVRQEGYLFASDMIQKFPVSVHKQMLRMLCAKVSLAARVD 317
>DDX25_MOUSE (Q9QY15) ATP-dependent RNA helicase DDX25 (EC 3.6.1.-) (DEAD box| protein 25) (Gonadotropin-regulated testicular RNA helicase) Length = 484 Score = 32.3 bits (72), Expect = 1.5 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 5/57 (8%) Frame = -1 Query: 396 MSSSIFGEKLREQVEERLD-FYDKGVAPRKNLDVMKAA----IDGLTNTEDDDGKEN 241 M+S ++G ERL+ + V PRKNL +++ IDG NTEDDD E+ Sbjct: 1 MASLLWGGDAGAAESERLNSHFSNLVHPRKNLRGIRSTTVPNIDGSLNTEDDDDDED 57
>CP4F1_RAT (P33274) Cytochrome P450 4F1 (EC 1.14.14.1) (CYPIVF1) (P450-A3)| Length = 524 Score = 31.6 bits (70), Expect = 2.5 Identities = 19/58 (32%), Positives = 30/58 (51%) Frame = -1 Query: 399 DMSSSIFGEKLREQVEERLDFYDKGVAPRKNLDVMKAAIDGLTNTEDDDGKENGDASV 226 + + ++ E+ R ++ LD + K A K LD ID L T+D+DGKE D + Sbjct: 265 EFTDAVIRERRRTLPDQGLDEFLKSKAKSKTLDF----IDVLLLTKDEDGKELSDEDI 318
>CCHCR_MOUSE (Q8K2I2) Coiled-coil alpha-helical rod protein 1 (Alpha helical| coiled-coil rod protein) Length = 770 Score = 30.8 bits (68), Expect = 4.3 Identities = 11/31 (35%), Positives = 20/31 (64%) Frame = +3 Query: 597 ILQDLKDCQHERLAELQPFHQSMMSGLVQYH 689 + ++L++ +H+ L E+Q HQ +S L Q H Sbjct: 156 VRKNLEEAKHKELEEIQSLHQEQLSSLTQAH 186
>TOP2_BOMMO (O16140) DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoisomerase II)| (TOPOII) Length = 1547 Score = 30.8 bits (68), Expect = 4.3 Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 2/83 (2%) Frame = -1 Query: 483 RASTKNKGRMARYLANKCSIASRIDCYSDMSSSIFGEKLREQVEERLDFYDKGVAPRKNL 304 +A AR++ KC D I +K + VEE + +G AP Sbjct: 1048 QAEADKLSNQARFILKKC----------DKGLVIENKKRKAMVEELIK---RGYAPDPIA 1094 Query: 303 DVMKAA--IDGLTNTEDDDGKEN 241 D K A I GLT EDDD +E+ Sbjct: 1095 DWKKRASKIQGLTALEDDDAQES 1117
>Y740_RICPR (O05961) Hypothetical UPF0053 protein RP740| Length = 303 Score = 30.8 bits (68), Expect = 4.3 Identities = 23/74 (31%), Positives = 34/74 (45%) Frame = -1 Query: 561 KALFRALKTRGNTPKYGLIFHSSFIGRASTKNKGRMARYLANKCSIASRIDCYSDMSSSI 382 K LF+AL T+ N+P LI I S K +A+ + IA +D Y + Sbjct: 129 KDLFKALATKQNSPLKRLI-RKHIIAAPSMKLLDLLAKMRRERTHIAIVVDEYGGTDGLV 187 Query: 381 FGEKLREQVEERLD 340 E L E++ R+D Sbjct: 188 TIEDLIEEIVGRID 201
>DDX25_RAT (Q9QY16) ATP-dependent RNA helicase DDX25 (EC 3.6.1.-) (DEAD box| protein 25) (Gonadotropin-regulated testicular RNA helicase) Length = 483 Score = 30.4 bits (67), Expect = 5.7 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 5/57 (8%) Frame = -1 Query: 396 MSSSIFGEKLREQVEERLD-FYDKGVAPRKNLDVMKAA----IDGLTNTEDDDGKEN 241 M+S ++G ERL+ + V PRKNL +++ IDG NTE+DD +++ Sbjct: 1 MASLLWGGDAGAAESERLNSHFSNLVHPRKNLRGIRSTTVPNIDGSLNTEEDDDEDD 57
>TRI46_MOUSE (Q7TNM2) Tripartite motif protein 46 (Tripartite, fibronectin| type-III and C-terminal SPRY motif protein) Length = 759 Score = 30.0 bits (66), Expect = 7.4 Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 5/43 (11%) Frame = +3 Query: 573 VSAE*RQGILQDLKDCQHERLAELQP---FHQSMM--SGLVQY 686 V E R +LQ +++CQ ERL+ L HQS++ SGLV Y Sbjct: 323 VLEEKRASLLQAIEECQQERLSRLSAQIHEHQSLLDGSGLVGY 365
>HN_PI2HT (P25466) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 571 Score = 30.0 bits (66), Expect = 7.4 Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 6/60 (10%) Frame = -1 Query: 627 HAGSLSNLAKCPASTL-----QILGAEKALFRALKTRGNTPKYG-LIFHSSFIGRASTKN 466 H GS+SN P + L I G K F LK+ TPKYG L+ SFI A++ N Sbjct: 107 HTGSMSNTNCTPGNLLLHDAAYINGINK--FLVLKSYNGTPKYGPLLNIPSFIPSATSPN 164
>HN_PI2H (P25465) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 571 Score = 30.0 bits (66), Expect = 7.4 Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 6/60 (10%) Frame = -1 Query: 627 HAGSLSNLAKCPASTL-----QILGAEKALFRALKTRGNTPKYG-LIFHSSFIGRASTKN 466 H GS+SN P + L I G K F LK+ TPKYG L+ SFI A++ N Sbjct: 107 HTGSMSNTNCTPGNLLLHDAAYINGLNK--FLVLKSYNGTPKYGPLLNIPSFIPSATSPN 164
>CP4FE_MOUSE (Q9EP75) Cytochrome P450 4F14 (EC 1.14.13.30) (Leukotriene-B4| omega-hydroxylase) (Leukotriene-B4 20-monooxygenase) (Cytochrome P450-LTB-omega) (Cyp4f-14) Length = 524 Score = 29.6 bits (65), Expect = 9.7 Identities = 18/58 (31%), Positives = 30/58 (51%) Frame = -1 Query: 399 DMSSSIFGEKLREQVEERLDFYDKGVAPRKNLDVMKAAIDGLTNTEDDDGKENGDASV 226 + + ++ E+ R ++ LD + K A K LD ID L ++D+DGKE D + Sbjct: 265 EFTDAVIRERHRTLPDQGLDDFLKSKAKSKTLDF----IDVLLLSKDEDGKELSDEDI 318
>CP4FB_HUMAN (Q9HBI6) Cytochrome P450 4F11 (EC 1.14.14.1) (CYPIVF11)| Length = 524 Score = 29.6 bits (65), Expect = 9.7 Identities = 18/58 (31%), Positives = 29/58 (50%) Frame = -1 Query: 399 DMSSSIFGEKLREQVEERLDFYDKGVAPRKNLDVMKAAIDGLTNTEDDDGKENGDASV 226 D + ++ E+ R + +D + K A K LD ID L ++D+DGKE D + Sbjct: 265 DFTDAVIQERRRTLPTQGIDDFLKNKAKSKTLDF----IDVLLLSKDEDGKELSDEDI 318
>TRI46_HUMAN (Q7Z4K8) Tripartite motif protein 46 (Tripartite, fibronectin| type-III and C-terminal SPRY motif protein) Length = 759 Score = 29.6 bits (65), Expect = 9.7 Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 5/43 (11%) Frame = +3 Query: 573 VSAE*RQGILQDLKDCQHERLAELQ---PFHQSMM--SGLVQY 686 V E R +LQ +++CQ ERLA L H+S++ SGLV Y Sbjct: 323 VLEEKRASLLQAIEECQQERLARLSAQIQEHRSLLDGSGLVGY 365 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,390,367 Number of Sequences: 219361 Number of extensions: 1506696 Number of successful extensions: 4289 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 4195 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4289 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7309604013 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
