>RECN_TREPA (O83456) DNA repair protein recN (Recombination protein N)|
          Length = 573

 Score = 38.1 bits (87), Expect = 0.025
 Identities = 33/116 (28%), Positives = 53/116 (45%)
 Frame = -1

Query: 681 QVVDAKVIQLDFNNSRIFLSLKDVKPSPPVGALEAVIGDEASLDGSLEPAQADFEWPEVD 502
           Q VDA +  +D     +  SLK       +GALE+  G    +DGSLEPA+A      ++
Sbjct: 230 QRVDAAIRGVDLQEGALLSSLKKA-----LGALESACG----IDGSLEPARA-----RLE 275

Query: 501 SLIEELKNIEQVKDVYKGRFFRSPGLAPTFQVYMASLVGQKYKVLARYGNNVQEVM 334
           S   E++++  V   Y       P      Q  +A +    Y++  +YG  V +V+
Sbjct: 276 SAYYEIEDVAHVLRTYTDGIQFCPDRLQHVQERLALI----YRLKKKYGGTVAQVL 327

>RS1H_BACSU (P38494) 30S ribosomal protein S1 homolog|
          Length = 382

 Score = 35.4 bits (80), Expect = 0.16
 Identities = 25/79 (31%), Positives = 42/79 (53%)
 Frame = -1

Query: 684 GQVVDAKVIQLDFNNSRIFLSLKDVKPSPPVGALEAVIGDEASLDGSLEPAQADFEWPEV 505
           GQ V  KV+ +D +N RI LS+KD  P P     E V   +  L+G+++   +   + E+
Sbjct: 234 GQEVKVKVLSVDRDNERISLSIKDTLPGPWNQIGEKVKPGDV-LEGTVQRLVSFGAFVEI 292

Query: 504 DSLIEELKNIEQVKDVYKG 448
              +E L +I Q+ + + G
Sbjct: 293 LPGVEGLVHISQISNKHIG 311

>IF4F2_YEAST (P39936) Eukaryotic initiation factor 4F subunit p130 (eIF4F p130)|
           (eIF-4F p130) (mRNA cap-binding protein complex subunit
           p130)
          Length = 914

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -1

Query: 585 LEAVIGDEASLDGSLEPAQADFEWPEVDSLIEELKNIEQVKDVYK 451
           + +VI  E +     EP+ +D E P V  L+E L   + + D+Y+
Sbjct: 356 INSVITTEENTVKETEPSTSDIEMPTVSQLLETLGKAQPISDIYE 400

>Y4762_ARATH (Q8RY73) Protein At4g17620, chloroplast precursor|
          Length = 544

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +2

Query: 476 IFFSSSIRESTSGHSKSACAGSRDPSSDASSPMTASKAPTGGLG 607
           +F   S  +S S  SKS+ +G+   SS +SS  ++S +  GG G
Sbjct: 13  LFGEDSDNDSRSSRSKSSSSGNASSSSSSSSSSSSSSSAAGGDG 56

>CASC3_RAT (Q8K3X0) Protein CASC3 (Cancer susceptibility candidate gene 3|
           protein homolog) (Barentsz protein) (Btz)
          Length = 699

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 7/56 (12%)
 Frame = +3

Query: 273 PYLCTSKLPLSALLYPKTS-------PPSPLAHCFHTAQGPYTFGQPKMPYIPGML 419
           P+   + LP   L  P  S       P   LA  + +A G   FG P  PY PG L
Sbjct: 583 PHQSPAPLPNPGLYPPPVSMSPGQPPPQQLLAPTYFSAPGVMNFGNPSYPYAPGAL 638

>CASC3_HUMAN (O15234) Protein CASC3 (Cancer susceptibility candidate gene 3|
           protein) (Metastatic lymph node protein 51) (MLN 51
           protein) (Barentsz protein) (Btz)
          Length = 703

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 7/56 (12%)
 Frame = +3

Query: 273 PYLCTSKLPLSALLYPKTS-------PPSPLAHCFHTAQGPYTFGQPKMPYIPGML 419
           P+   + LP   L  P  S       P   LA  + +A G   FG P  PY PG L
Sbjct: 587 PHQTPAPLPNPGLYPPPVSMSPGQPPPQQLLAPTYFSAPGVMNFGNPSYPYAPGAL 642

>RS1_STAS1 (Q49XT0) 30S ribosomal protein S1|
          Length = 393

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -1

Query: 684 GQVVDAKVIQLDFNNSRIFLSLKDVKPSP 598
           G+ V+ K+  +D ++ RI LS+KD  PSP
Sbjct: 240 GETVNVKIKSVDKDSERISLSIKDTLPSP 268

>FOXF2_HUMAN (Q12947) Forkhead box protein F2 (Forkhead-related protein FKHL6)|
           (Forkhead-related transcription factor 2) (FREAC-2)
           (Forkhead-related activator 2)
          Length = 444

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 503 STSGHSKSACAGSRDPSSDASSPMTASKAPTGG 601
           S+S  S ++CA S   S+ AS+P  A K+  GG
Sbjct: 47  SSSSSSSASCASSSSSSNSASAPSAACKSAGGG 79

>CASC3_MOUSE (Q8K3W3) Protein CASC3 (Cancer susceptibility candidate gene 3|
           protein homolog) (Metastatic lymph node protein 51
           homolog) (MLN 51 protein homolog) (Barentsz protein)
           (Btz)
          Length = 697

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 7/56 (12%)
 Frame = +3

Query: 273 PYLCTSKLPLSALLYPKTS-------PPSPLAHCFHTAQGPYTFGQPKMPYIPGML 419
           P+     LP   L  P  S       P   LA  + +A G   FG P  PY PG L
Sbjct: 582 PHQSPGPLPNPGLYPPPVSMSPGQPPPQQLLAPTYFSAPGVMNFGNPNYPYAPGAL 637

>FLO5_YEAST (P38894) Flocculation protein FLO5 precursor (Flocculin-5)|
          Length = 1075

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 17/132 (12%)
 Frame = +2

Query: 251  GNPDDQLTLFVHIKIASFSPSLSKDVSTITSCT---------LFPYRARTLYFWPTKDAI 403
            G P D+  + +     + S SLS     ITS            +P    ++       + 
Sbjct: 617  GQPTDETVIVIRTPTTAISSSLSSSSGQITSSITSSRPIITPFYPSNGTSVISSSVISSS 676

Query: 404  YTWNVGANPGLLKNLPL*TSLTCS--IFFSSSIRE------STSGHSKSACAGSRDPSSD 559
             T ++  +   + +  + +S T S  IF  SS         STSG S+S  + +   SS 
Sbjct: 677  VTSSLVTSSSFISSSVISSSTTTSTSIFSESSTSSVIPTSSSTSGSSESKTSSASSSSSS 736

Query: 560  ASSPMTASKAPT 595
            +S    + K+PT
Sbjct: 737  SSISSESPKSPT 748

>POLH_HUMAN (Q9Y253) DNA polymerase eta (EC 2.7.7.7) (RAD30 homolog A)|
           (Xeroderma pigmentosum variant type protein)
          Length = 713

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 23/68 (33%), Positives = 33/68 (48%)
 Frame = +2

Query: 449 PL*TSLTCSIFFSSSIRESTSGHSKSACAGSRDPSSDASSPMTASKAPTGGLGFTSLSDK 628
           PL     C+  FS+S   S++  +      S DPSS    P+T+S+A T G G    + K
Sbjct: 418 PLTMLFLCATKFSASAPSSSTDITSFL---SSDPSSLPKVPVTSSEAKTQGSGPAVTATK 474

Query: 629 KIRLLLKS 652
           K    L+S
Sbjct: 475 KATTSLES 482

>ISPH_FUSNN (Q8RI52) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC|
           1.17.1.2)
          Length = 827

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -1

Query: 684 GQVVDAKVIQLDFNNSRIFLSLKDVKPSPPVGALE 580
           G  V+ K+ +LD NN +I  SLK ++ SP   A+E
Sbjct: 694 GNEVELKITELDLNNKKIKGSLKALRKSPWEHAME 728

>FLVC1_FELCA (Q9N1F2) Feline leukemia virus subgroup C receptor-related protein|
           1
          Length = 560

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -2

Query: 194 EETPGTKSSPAERDFVVFDHFVNL*YVSLTKIISSF 87
           EETPGT+ SPA +  +    FV L   SL  ++++F
Sbjct: 88  EETPGTEGSPAPQTALSARRFVVLLIFSLYSLVNAF 123

>RS1_STAHJ (Q4L6I1) 30S ribosomal protein S1|
          Length = 392

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -1

Query: 684 GQVVDAKVIQLDFNNSRIFLSLKDVKPSP 598
           GQ VD KV  ++ +  RI LS+KD  P+P
Sbjct: 240 GQEVDVKVKSVEKDAERISLSIKDTLPTP 268

>REG2_PYRAB (Q9V2K6) Putative HTH-type transcriptional regulator PYRAB00690|
          Length = 148

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = -1

Query: 510 EVDSLIEELKNIEQVKDVYKG 448
           EVD++I E+ N+E VK++ KG
Sbjct: 78  EVDAMISEISNVEYVKEIEKG 98


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,169,403
Number of Sequences: 219361
Number of extensions: 2054216
Number of successful extensions: 6000
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 5607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5974
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6769072002
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)