| Clone Name | rbags23c08 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK072777.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023139B06, full insert sequence Length = 1030 Score = 603 bits (304), Expect = e-169 Identities = 449/496 (90%), Gaps = 1/496 (0%) Strand = Plus / Minus Query: 137 aacttagaaggtcatctcatggggcttgtcaccgtccctgagagagaaccgggcaccaag 196 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 733 aacttagaatgtcatctcatggggcttgtcgccgtccctgagagagaaccgggcaccaag 674 Query: 197 atagttcttaaggtcagggacagcatcgatagccttgatcaactcagcatcaatggcctt 256 |||| || ||||| |||||| | |||||||||||||||||||||||||| | ||||| Sbjct: 673 ataggatttcaggtctgggacaacctcgatagccttgatcaactcagcatccacagcctt 614 Query: 257 ctggtcatcctttttgaagtcaggcaggttcttggttgcctccttctcagtctcaaacag 316 |||||||||||| |||||||| ||||| |||||||||||||||||||| |||||||| || Sbjct: 613 ctggtcatccttcttgaagtcgggcagattcttggttgcctccttctctgtctcaaaaag 554 Query: 317 ctccccttcagtcttctttgccctggccttcttgtccctagcaaagtacttgtcatcaaa 376 || || || |||||||| ||| | ||||||||||||| |||||||||||||||||||| Sbjct: 553 ttcaccctcggtcttcttggcctttgccttcttgtcccgggcaaagtacttgtcatcaaa 494 Query: 377 cttctccaccttaacaccagagatgtcaacctttgtggatgtggcaatgacataagcctg 436 ||| ||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| Sbjct: 493 cttatccaccttaacaccagagatgtcaaccttcgtggatgtggcaatgacgtaggcctg 434 Query: 437 gttcacccggcgaactgggacaccattgatcttgaaaggtccagtgatgaggagcaggcc 496 |||||| ||||| | || || ||||||||||| |||||||| ||||||||||||||||| Sbjct: 433 gttcacacggcggatgggcactccattgatcttaaaaggtccggtgatgaggagcaggcc 374 Query: 497 agacttgagctgcttgaggaacaccacgcgcttccccatgtacctcccagcgagcaggat 556 ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct: 373 ggacttgagctgcttgaggaacacgacgcgcttccccatgtacctcccggcgagcaggat 314 Query: 557 cagcaccgtgcccgggcgtgatggtcgacctgagcttggtaggtttgggcttgcgggtgc 616 ||||||||| ||| ||||||||||||||||||||||||||||| |||| ||||||||||| Sbjct: 313 cagcaccgt-ccccggcgtgatggtcgacctgagcttggtagggttggccttgcgggtgc 255 Query: 617 tggcggtgcggggctt 632 ||| || ||||||||| Sbjct: 254 tgggggcgcggggctt 239
>ref|XM_466485.1| Oryza sativa (japonica cultivar-group), mRNA Length = 660 Score = 597 bits (301), Expect = e-167 Identities = 446/493 (90%), Gaps = 1/493 (0%) Strand = Plus / Minus Query: 140 ttagaaggtcatctcatggggcttgtcaccgtccctgagagagaaccgggcaccaagata 199 |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 660 ttagaatgtcatctcatggggcttgtcgccgtccctgagagagaaccgggcaccaagata 601 Query: 200 gttcttaaggtcagggacagcatcgatagccttgatcaactcagcatcaatggccttctg 259 | || ||||| |||||| | |||||||||||||||||||||||||| | |||||||| Sbjct: 600 ggatttcaggtctgggacaacctcgatagccttgatcaactcagcatccacagccttctg 541 Query: 260 gtcatcctttttgaagtcaggcaggttcttggttgcctccttctcagtctcaaacagctc 319 ||||||||| |||||||| ||||| |||||||||||||||||||| |||||||| || || Sbjct: 540 gtcatccttcttgaagtcgggcagattcttggttgcctccttctctgtctcaaaaagttc 481 Query: 320 cccttcagtcttctttgccctggccttcttgtccctagcaaagtacttgtcatcaaactt 379 || || |||||||| ||| | ||||||||||||| ||||||||||||||||||||||| Sbjct: 480 accctcggtcttcttggcctttgccttcttgtcccgggcaaagtacttgtcatcaaactt 421 Query: 380 ctccaccttaacaccagagatgtcaacctttgtggatgtggcaatgacataagcctggtt 439 ||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||| Sbjct: 420 atccaccttaacaccagagatgtcaaccttcgtggatgtggcaatgacgtaggcctggtt 361 Query: 440 cacccggcgaactgggacaccattgatcttgaaaggtccagtgatgaggagcaggccaga 499 ||| ||||| | || || ||||||||||| |||||||| ||||||||||||||||| || Sbjct: 360 cacacggcggatgggcactccattgatcttaaaaggtccggtgatgaggagcaggccgga 301 Query: 500 cttgagctgcttgaggaacaccacgcgcttccccatgtacctcccagcgagcaggatcag 559 ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct: 300 cttgagctgcttgaggaacacgacgcgcttccccatgtacctcccggcgagcaggatcag 241 Query: 560 caccgtgcccgggcgtgatggtcgacctgagcttggtaggtttgggcttgcgggtgctgg 619 |||||| ||| ||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct: 240 caccgt-ccccggcgtgatggtcgacctgagcttggtagggttggccttgcgggtgctgg 182 Query: 620 cggtgcggggctt 632 || ||||||||| Sbjct: 181 gggcgcggggctt 169
>gb|AY846820.1| Triticum aestivum ribosomal protein L6 mRNA, complete cds Length = 686 Score = 563 bits (284), Expect = e-157 Identities = 444/496 (89%), Gaps = 1/496 (0%) Strand = Plus / Minus Query: 137 aacttagaaggtcatctcatggggcttgtcaccgtccctgagagagaaccgggcaccaag 196 |||||| |||||||||||||| |||||||| || |||||||| ||||||||||||||||| Sbjct: 682 aacttaaaaggtcatctcatgcggcttgtcgccatccctgagggagaaccgggcaccaag 623 Query: 197 atagttcttaaggtcagggacagcatcgatagccttgatcaactcagcatcaatggcctt 256 ||| || |||||||| ||||| |||||||||||||||||||||||||| |||||| |||| Sbjct: 622 ataatttttaaggtctgggacggcatcgatagccttgatcaactcagcgtcaatgacctt 563 Query: 257 ctggtcatcctttttgaagtcaggcaggttcttggttgcctccttctcagtctcaaacag 316 |||||||||||| |||||||| |||| ||||||||||||||||| || | |||||| || Sbjct: 562 ctggtcatccttcttgaagtctggcaaattcttggttgcctccttatccgactcaaatag 503 Query: 317 ctccccttcagtcttctttgccctggccttcttgtccctagcaaagtacttgtcatcaaa 376 ||| || ||||||||||||||||| | |||||| |||||||| ||||||||||||||||| Sbjct: 502 ctcgccctcagtcttctttgccctagtcttcttctccctagcgaagtacttgtcatcaaa 443 Query: 377 cttctccaccttaacaccagagatgtcaacctttgtggatgtggcaatgacataagcctg 436 ||||| ||| ||||| ||||||||| ||||||||||||||||||||||| |||||||| Sbjct: 442 cttctgcacattaaccttagagatgtcgacctttgtggatgtggcaatgacgtaagcctg 383 Query: 437 gttcacccggcgaactgggacaccattgatcttgaaaggtccagtgatgaggagcaggcc 496 |||||| | ||| | ||| || |||||||||||||||||||||||||||||||| ||||| Sbjct: 382 gttcactctgcggattggcacgccattgatcttgaaaggtccagtgatgaggagaaggcc 323 Query: 497 agacttgagctgcttgaggaacaccacgcgcttccccatgtacctcccagcgagcaggat 556 |||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct: 322 ggactggagctgcttgaggaacaccacgcgctttcccatgtacctccccgcgagcaggat 263 Query: 557 cagcaccgtgcccgggcgtgatggtcgacctgagcttggtaggtttgggcttgcgggtgc 616 ||||||||||||| || ||||||||||||||||||||||| || | ||||||||| |||| Sbjct: 262 cagcaccgtgccc-ggtgtgatggtcgacctgagcttggtgggatggggcttgcgtgtgc 204 Query: 617 tggcggtgcggggctt 632 | ||||||| ||||| Sbjct: 203 tcacggtgcgtggctt 188
>ref|XM_472843.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 669 Score = 434 bits (219), Expect = e-118 Identities = 409/471 (86%), Gaps = 1/471 (0%) Strand = Plus / Minus Query: 149 catctcatggggcttgtcaccgtccctgagagagaaccgggcaccaagatagttcttaag 208 |||||| ||||||||||| |||||||||||||| ||||| |||||||| || | || || Sbjct: 660 catctcgtggggcttgtcgccgtccctgagagaaaaccgcgcaccaaggtaagttttcag 601 Query: 209 gtcagggacagcatcgatagccttgatcaactcagcatcaatggccttctggtcatcctt 268 || |||||||| || ||||| ||||||||||| ||||| | | |||||||| ||||| Sbjct: 600 atccgggacagcttcaatagctttgatcaactcggcatccacaactttctggtcctcctt 541 Query: 269 tttgaagtcaggcaggttcttggttgcctccttctcagtctcaaacagctccccttcagt 328 |||||| || ||||||||||||||||||||||||||||||||||| || || || || || Sbjct: 540 tttgaactccggcaggttcttggttgcctccttctcagtctcaaaaagttcaccctcggt 481 Query: 329 cttctttgccctggccttcttgtccctagcaaagtacttgtcatcaaacttctccacctt 388 |||||| ||| | |||||||||||||| |||||||||||||||||||||||||| || Sbjct: 480 cttcttcgccttctgcttcttgtccctagagaagtacttgtcatcaaacttctccacatt 421 Query: 389 aacaccagagatgtcaacctttgtggatgtggcaatgacataagcctggttcacccggcg 448 |||||||||||| |||||||||||||| || |||||||| || | ||||||||| ||||| Sbjct: 420 aacaccagagatatcaacctttgtggacgtagcaatgacgtagggctggttcacacggcg 361 Query: 449 aactgggacaccattgatcttgaaaggtccagtgatgaggagcaggccagacttgagctg 508 | || || ||||||||||| |||||||| |||| ||| |||||||| || |||||||| Sbjct: 360 gatcggaactccattgatcttaaaaggtccggtgacgagaagcaggccggatttgagctg 301 Query: 509 cttgaggaacaccacgcgcttccccatgtacctcccagcgagcaggatcagcaccgtgcc 568 |||||||||||| ||||||||||||||| ||||||| ||||||||||||||||| || || Sbjct: 300 cttgaggaacacgacgcgcttccccatgaacctcccggcgagcaggatcagcactgt-cc 242 Query: 569 cgggcgtgatggtcgacctgagcttggtaggtttgggcttgcgggtgctgg 619 | |||||||||| |||||||||||||||||| ||||||||||||||||||| Sbjct: 241 caggcgtgatggacgacctgagcttggtagggttgggcttgcgggtgctgg 191
>dbj|AK067896.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123D20, full insert sequence Length = 933 Score = 434 bits (219), Expect = e-118 Identities = 409/471 (86%), Gaps = 1/471 (0%) Strand = Plus / Minus Query: 149 catctcatggggcttgtcaccgtccctgagagagaaccgggcaccaagatagttcttaag 208 |||||| ||||||||||| |||||||||||||| ||||| |||||||| || | || || Sbjct: 714 catctcgtggggcttgtcgccgtccctgagagaaaaccgcgcaccaaggtaagttttcag 655 Query: 209 gtcagggacagcatcgatagccttgatcaactcagcatcaatggccttctggtcatcctt 268 || |||||||| || ||||| ||||||||||| ||||| | | |||||||| ||||| Sbjct: 654 atccgggacagcttcaatagctttgatcaactcggcatccacaactttctggtcctcctt 595 Query: 269 tttgaagtcaggcaggttcttggttgcctccttctcagtctcaaacagctccccttcagt 328 |||||| || ||||||||||||||||||||||||||||||||||| || || || || || Sbjct: 594 tttgaactccggcaggttcttggttgcctccttctcagtctcaaaaagttcaccctcggt 535 Query: 329 cttctttgccctggccttcttgtccctagcaaagtacttgtcatcaaacttctccacctt 388 |||||| ||| | |||||||||||||| |||||||||||||||||||||||||| || Sbjct: 534 cttcttcgccttctgcttcttgtccctagagaagtacttgtcatcaaacttctccacatt 475 Query: 389 aacaccagagatgtcaacctttgtggatgtggcaatgacataagcctggttcacccggcg 448 |||||||||||| |||||||||||||| || |||||||| || | ||||||||| ||||| Sbjct: 474 aacaccagagatatcaacctttgtggacgtagcaatgacgtagggctggttcacacggcg 415 Query: 449 aactgggacaccattgatcttgaaaggtccagtgatgaggagcaggccagacttgagctg 508 | || || ||||||||||| |||||||| |||| ||| |||||||| || |||||||| Sbjct: 414 gatcggaactccattgatcttaaaaggtccggtgacgagaagcaggccggatttgagctg 355 Query: 509 cttgaggaacaccacgcgcttccccatgtacctcccagcgagcaggatcagcaccgtgcc 568 |||||||||||| ||||||||||||||| ||||||| ||||||||||||||||| || || Sbjct: 354 cttgaggaacacgacgcgcttccccatgaacctcccggcgagcaggatcagcactgt-cc 296 Query: 569 cgggcgtgatggtcgacctgagcttggtaggtttgggcttgcgggtgctgg 619 | |||||||||| |||||||||||||||||| ||||||||||||||||||| Sbjct: 295 caggcgtgatggacgacctgagcttggtagggttgggcttgcgggtgctgg 245
>gb|AY103559.1| Zea mays PCO112591 mRNA sequence Length = 1361 Score = 387 bits (195), Expect = e-104 Identities = 403/471 (85%), Gaps = 1/471 (0%) Strand = Plus / Minus Query: 149 catctcatggggcttgtcaccgtccctgagagagaaccgggcaccaagatagttcttaag 208 ||||||||||||||||||||| |||||||||||||||||||| ||||||||| | || || Sbjct: 1055 catctcatggggcttgtcaccatccctgagagagaaccgggcgccaagataggttttcag 996 Query: 209 gtcagggacagcatcgatagccttgatcaactcagcatcaatggccttctggtcatcctt 268 || ||||||| |||||||||||||||| ||| ||| | ||||||||||||||||| Sbjct: 995 ctccaggacagcctcgatagccttgatcagagcagaatccacagccttctggtcatcctt 936 Query: 269 tttgaagtcaggcaggttcttggttgcctccttctcagtctcaaacagctccccttcagt 328 |||||||||||||| ||||| ||||||||| || |||||||| ||||| || || || Sbjct: 935 cttgaagtcaggcagtgacttggatgcctccttttctgtctcaaaaagctcgccctcggt 876 Query: 329 cttctttgccctggccttcttgtccctagcaaagtacttgtcatcaaacttctccacctt 388 |||||| || | |||||| ||||| ||||||||||||||||||||||| | || | Sbjct: 875 cttcttcaccttctgcttcttctccctggcaaagtacttgtcatcaaacttggcgacatc 816 Query: 389 aacaccagagatgtcaacctttgtggatgtggcaatgacataagcctggttcacccggcg 448 |||||||||||||||||| || || ||||| ||||||||||| | ||||||||| ||||| Sbjct: 815 aacaccagagatgtcaactttggttgatgtagcaatgacataggtctggttcacacggcg 756 Query: 449 aactgggacaccattgatcttgaaaggtccagtgatgaggagcaggccagacttgagctg 508 | || || ||||||||||||||||| |||| ||| ||||||||||||||||||||||| Sbjct: 755 gatcggtactccattgatcttgaaaggcccagagataaggagcaggccagacttgagctg 696 Query: 509 cttgaggaacaccacgcgcttccccatgtacctcccagcgagcaggatcagcaccgtgcc 568 |||||| |||||||| | |||||||||| | | ||| ||||| |||||||||||||| || Sbjct: 695 cttgagaaacaccactctcttccccatgaagcgccctgcgaggaggatcagcaccgt-cc 637 Query: 569 cgggcgtgatggtcgacctgagcttggtaggtttgggcttgcgggtgctgg 619 | ||||||||| ||||||||||||||||||| || |||||||||||||||| Sbjct: 636 caggcgtgatgctcgacctgagcttggtaggcttaggcttgcgggtgctgg 586
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 200 bits (101), Expect = 4e-48 Identities = 146/161 (90%) Strand = Plus / Plus Query: 137 aacttagaaggtcatctcatggggcttgtcaccgtccctgagagagaaccgggcaccaag 196 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 22901790 aacttagaatgtcatctcatggggcttgtcgccgtccctgagagagaaccgggcaccaag 22901849 Query: 197 atagttcttaaggtcagggacagcatcgatagccttgatcaactcagcatcaatggcctt 256 |||| || ||||| |||||| | |||||||||||||||||||||||||| | ||||| Sbjct: 22901850 ataggatttcaggtctgggacaacctcgatagccttgatcaactcagcatccacagcctt 22901909 Query: 257 ctggtcatcctttttgaagtcaggcaggttcttggttgcct 297 |||||||||||| |||||||| ||||| ||||||||||||| Sbjct: 22901910 ctggtcatccttcttgaagtcgggcagattcttggttgcct 22901950 Score = 190 bits (96), Expect = 4e-45 Identities = 162/184 (88%) Strand = Plus / Plus Query: 295 cctccttctcagtctcaaacagctccccttcagtcttctttgccctggccttcttgtccc 354 |||||||||| |||||||| || || || || |||||||| ||| | ||||||||||||| Sbjct: 22902042 cctccttctctgtctcaaaaagttcaccctcggtcttcttggcctttgccttcttgtccc 22902101 Query: 355 tagcaaagtacttgtcatcaaacttctccaccttaacaccagagatgtcaacctttgtgg 414 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct: 22902102 gggcaaagtacttgtcatcaaacttatccaccttaacaccagagatgtcaaccttcgtgg 22902161 Query: 415 atgtggcaatgacataagcctggttcacccggcgaactgggacaccattgatcttgaaag 474 ||||||||||||| || ||||||||||| ||||| | || || ||||||||||| |||| Sbjct: 22902162 atgtggcaatgacgtaggcctggttcacacggcggatgggcactccattgatcttaaaag 22902221 Query: 475 gtcc 478 |||| Sbjct: 22902222 gtcc 22902225 Score = 168 bits (85), Expect = 1e-38 Identities = 104/109 (95%), Gaps = 1/109 (0%) Strand = Plus / Plus Query: 480 gtgatgaggagcaggccagacttgagctgcttgaggaacaccacgcgcttccccatgtac 539 ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| Sbjct: 22903064 gtgatgaggagcaggccggacttgagctgcttgaggaacacgacgcgcttccccatgtac 22903123 Query: 540 ctcccagcgagcaggatcagcaccgtgcccgggcgtgatggtcgacctg 588 ||||| |||||||||||||||||||| ||| |||||||||||||||||| Sbjct: 22903124 ctcccggcgagcaggatcagcaccgt-ccccggcgtgatggtcgacctg 22903171 Score = 67.9 bits (34), Expect = 4e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 583 gacctgagcttggtaggtttgggcttgcgggtgctggcggtgcggggctt 632 ||||||||||||||||| |||| |||||||||||||| || ||||||||| Sbjct: 22903263 gacctgagcttggtagggttggccttgcgggtgctgggggcgcggggctt 22903312
>dbj|AP005874.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0016G10 Length = 143211 Score = 200 bits (101), Expect = 4e-48 Identities = 146/161 (90%) Strand = Plus / Plus Query: 137 aacttagaaggtcatctcatggggcttgtcaccgtccctgagagagaaccgggcaccaag 196 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 21592 aacttagaatgtcatctcatggggcttgtcgccgtccctgagagagaaccgggcaccaag 21651 Query: 197 atagttcttaaggtcagggacagcatcgatagccttgatcaactcagcatcaatggcctt 256 |||| || ||||| |||||| | |||||||||||||||||||||||||| | ||||| Sbjct: 21652 ataggatttcaggtctgggacaacctcgatagccttgatcaactcagcatccacagcctt 21711 Query: 257 ctggtcatcctttttgaagtcaggcaggttcttggttgcct 297 |||||||||||| |||||||| ||||| ||||||||||||| Sbjct: 21712 ctggtcatccttcttgaagtcgggcagattcttggttgcct 21752 Score = 190 bits (96), Expect = 4e-45 Identities = 162/184 (88%) Strand = Plus / Plus Query: 295 cctccttctcagtctcaaacagctccccttcagtcttctttgccctggccttcttgtccc 354 |||||||||| |||||||| || || || || |||||||| ||| | ||||||||||||| Sbjct: 21844 cctccttctctgtctcaaaaagttcaccctcggtcttcttggcctttgccttcttgtccc 21903 Query: 355 tagcaaagtacttgtcatcaaacttctccaccttaacaccagagatgtcaacctttgtgg 414 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct: 21904 gggcaaagtacttgtcatcaaacttatccaccttaacaccagagatgtcaaccttcgtgg 21963 Query: 415 atgtggcaatgacataagcctggttcacccggcgaactgggacaccattgatcttgaaag 474 ||||||||||||| || ||||||||||| ||||| | || || ||||||||||| |||| Sbjct: 21964 atgtggcaatgacgtaggcctggttcacacggcggatgggcactccattgatcttaaaag 22023 Query: 475 gtcc 478 |||| Sbjct: 22024 gtcc 22027 Score = 168 bits (85), Expect = 1e-38 Identities = 104/109 (95%), Gaps = 1/109 (0%) Strand = Plus / Plus Query: 480 gtgatgaggagcaggccagacttgagctgcttgaggaacaccacgcgcttccccatgtac 539 ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| Sbjct: 22866 gtgatgaggagcaggccggacttgagctgcttgaggaacacgacgcgcttccccatgtac 22925 Query: 540 ctcccagcgagcaggatcagcaccgtgcccgggcgtgatggtcgacctg 588 ||||| |||||||||||||||||||| ||| |||||||||||||||||| Sbjct: 22926 ctcccggcgagcaggatcagcaccgt-ccccggcgtgatggtcgacctg 22973 Score = 67.9 bits (34), Expect = 4e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 583 gacctgagcttggtaggtttgggcttgcgggtgctggcggtgcggggctt 632 ||||||||||||||||| |||| |||||||||||||| || ||||||||| Sbjct: 23065 gacctgagcttggtagggttggccttgcgggtgctgggggcgcggggctt 23114
>dbj|AP005640.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0006O15 Length = 139723 Score = 200 bits (101), Expect = 4e-48 Identities = 146/161 (90%) Strand = Plus / Plus Query: 137 aacttagaaggtcatctcatggggcttgtcaccgtccctgagagagaaccgggcaccaag 196 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 135128 aacttagaatgtcatctcatggggcttgtcgccgtccctgagagagaaccgggcaccaag 135187 Query: 197 atagttcttaaggtcagggacagcatcgatagccttgatcaactcagcatcaatggcctt 256 |||| || ||||| |||||| | |||||||||||||||||||||||||| | ||||| Sbjct: 135188 ataggatttcaggtctgggacaacctcgatagccttgatcaactcagcatccacagcctt 135247 Query: 257 ctggtcatcctttttgaagtcaggcaggttcttggttgcct 297 |||||||||||| |||||||| ||||| ||||||||||||| Sbjct: 135248 ctggtcatccttcttgaagtcgggcagattcttggttgcct 135288 Score = 190 bits (96), Expect = 4e-45 Identities = 162/184 (88%) Strand = Plus / Plus Query: 295 cctccttctcagtctcaaacagctccccttcagtcttctttgccctggccttcttgtccc 354 |||||||||| |||||||| || || || || |||||||| ||| | ||||||||||||| Sbjct: 135380 cctccttctctgtctcaaaaagttcaccctcggtcttcttggcctttgccttcttgtccc 135439 Query: 355 tagcaaagtacttgtcatcaaacttctccaccttaacaccagagatgtcaacctttgtgg 414 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct: 135440 gggcaaagtacttgtcatcaaacttatccaccttaacaccagagatgtcaaccttcgtgg 135499 Query: 415 atgtggcaatgacataagcctggttcacccggcgaactgggacaccattgatcttgaaag 474 ||||||||||||| || ||||||||||| ||||| | || || ||||||||||| |||| Sbjct: 135500 atgtggcaatgacgtaggcctggttcacacggcggatgggcactccattgatcttaaaag 135559 Query: 475 gtcc 478 |||| Sbjct: 135560 gtcc 135563 Score = 168 bits (85), Expect = 1e-38 Identities = 104/109 (95%), Gaps = 1/109 (0%) Strand = Plus / Plus Query: 480 gtgatgaggagcaggccagacttgagctgcttgaggaacaccacgcgcttccccatgtac 539 ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| Sbjct: 136402 gtgatgaggagcaggccggacttgagctgcttgaggaacacgacgcgcttccccatgtac 136461 Query: 540 ctcccagcgagcaggatcagcaccgtgcccgggcgtgatggtcgacctg 588 ||||| |||||||||||||||||||| ||| |||||||||||||||||| Sbjct: 136462 ctcccggcgagcaggatcagcaccgt-ccccggcgtgatggtcgacctg 136509 Score = 67.9 bits (34), Expect = 4e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 583 gacctgagcttggtaggtttgggcttgcgggtgctggcggtgcggggctt 632 ||||||||||||||||| |||| |||||||||||||| || ||||||||| Sbjct: 136601 gacctgagcttggtagggttggccttgcgggtgctgggggcgcggggctt 136650
>emb|AL606447.3|OSJN00011 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0022F23, complete sequence Length = 130273 Score = 159 bits (80), Expect = 1e-35 Identities = 158/184 (85%) Strand = Plus / Plus Query: 295 cctccttctcagtctcaaacagctccccttcagtcttctttgccctggccttcttgtccc 354 ||||||||||||||||||| || || || || |||||||| ||| | ||||||||||| Sbjct: 79304 cctccttctcagtctcaaaaagttcaccctcggtcttcttcgccttctgcttcttgtccc 79363 Query: 355 tagcaaagtacttgtcatcaaacttctccaccttaacaccagagatgtcaacctttgtgg 414 ||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct: 79364 tagagaagtacttgtcatcaaacttctccacattaacaccagagatatcaacctttgtgg 79423 Query: 415 atgtggcaatgacataagcctggttcacccggcgaactgggacaccattgatcttgaaag 474 | || |||||||| || | ||||||||| ||||| | || || ||||||||||| |||| Sbjct: 79424 acgtagcaatgacgtagggctggttcacacggcggatcggaactccattgatcttaaaag 79483 Query: 475 gtcc 478 |||| Sbjct: 79484 gtcc 79487 Score = 121 bits (61), Expect = 3e-24 Identities = 98/109 (89%), Gaps = 1/109 (0%) Strand = Plus / Plus Query: 480 gtgatgaggagcaggccagacttgagctgcttgaggaacaccacgcgcttccccatgtac 539 |||| ||| |||||||| || |||||||||||||||||||| ||||||||||||||| || Sbjct: 80536 gtgacgagaagcaggccggatttgagctgcttgaggaacacgacgcgcttccccatgaac 80595 Query: 540 ctcccagcgagcaggatcagcaccgtgcccgggcgtgatggtcgacctg 588 ||||| ||||||||||||||||| || ||| |||||||||| ||||||| Sbjct: 80596 ctcccggcgagcaggatcagcactgt-cccaggcgtgatggacgacctg 80643 Score = 113 bits (57), Expect = 7e-22 Identities = 126/149 (84%) Strand = Plus / Plus Query: 149 catctcatggggcttgtcaccgtccctgagagagaaccgggcaccaagatagttcttaag 208 |||||| ||||||||||| |||||||||||||| ||||| |||||||| || | || || Sbjct: 79067 catctcgtggggcttgtcgccgtccctgagagaaaaccgcgcaccaaggtaagttttcag 79126 Query: 209 gtcagggacagcatcgatagccttgatcaactcagcatcaatggccttctggtcatcctt 268 || |||||||| || ||||| ||||||||||| ||||| | | |||||||| ||||| Sbjct: 79127 atccgggacagcttcaatagctttgatcaactcggcatccacaactttctggtcctcctt 79186 Query: 269 tttgaagtcaggcaggttcttggttgcct 297 |||||| || ||||||||||||||||||| Sbjct: 79187 tttgaactccggcaggttcttggttgcct 79215 Score = 65.9 bits (33), Expect = 2e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 583 gacctgagcttggtaggtttgggcttgcgggtgctgg 619 ||||||||||||||||| ||||||||||||||||||| Sbjct: 80735 gacctgagcttggtagggttgggcttgcgggtgctgg 80771
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 159 bits (80), Expect = 1e-35 Identities = 158/184 (85%) Strand = Plus / Plus Query: 295 cctccttctcagtctcaaacagctccccttcagtcttctttgccctggccttcttgtccc 354 ||||||||||||||||||| || || || || |||||||| ||| | ||||||||||| Sbjct: 23636623 cctccttctcagtctcaaaaagttcaccctcggtcttcttcgccttctgcttcttgtccc 23636682 Query: 355 tagcaaagtacttgtcatcaaacttctccaccttaacaccagagatgtcaacctttgtgg 414 ||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct: 23636683 tagagaagtacttgtcatcaaacttctccacattaacaccagagatatcaacctttgtgg 23636742 Query: 415 atgtggcaatgacataagcctggttcacccggcgaactgggacaccattgatcttgaaag 474 | || |||||||| || | ||||||||| ||||| | || || ||||||||||| |||| Sbjct: 23636743 acgtagcaatgacgtagggctggttcacacggcggatcggaactccattgatcttaaaag 23636802 Query: 475 gtcc 478 |||| Sbjct: 23636803 gtcc 23636806 Score = 121 bits (61), Expect = 3e-24 Identities = 98/109 (89%), Gaps = 1/109 (0%) Strand = Plus / Plus Query: 480 gtgatgaggagcaggccagacttgagctgcttgaggaacaccacgcgcttccccatgtac 539 |||| ||| |||||||| || |||||||||||||||||||| ||||||||||||||| || Sbjct: 23637855 gtgacgagaagcaggccggatttgagctgcttgaggaacacgacgcgcttccccatgaac 23637914 Query: 540 ctcccagcgagcaggatcagcaccgtgcccgggcgtgatggtcgacctg 588 ||||| ||||||||||||||||| || ||| |||||||||| ||||||| Sbjct: 23637915 ctcccggcgagcaggatcagcactgt-cccaggcgtgatggacgacctg 23637962 Score = 113 bits (57), Expect = 7e-22 Identities = 126/149 (84%) Strand = Plus / Plus Query: 149 catctcatggggcttgtcaccgtccctgagagagaaccgggcaccaagatagttcttaag 208 |||||| ||||||||||| |||||||||||||| ||||| |||||||| || | || || Sbjct: 23636386 catctcgtggggcttgtcgccgtccctgagagaaaaccgcgcaccaaggtaagttttcag 23636445 Query: 209 gtcagggacagcatcgatagccttgatcaactcagcatcaatggccttctggtcatcctt 268 || |||||||| || ||||| ||||||||||| ||||| | | |||||||| ||||| Sbjct: 23636446 atccgggacagcttcaatagctttgatcaactcggcatccacaactttctggtcctcctt 23636505 Query: 269 tttgaagtcaggcaggttcttggttgcct 297 |||||| || ||||||||||||||||||| Sbjct: 23636506 tttgaactccggcaggttcttggttgcct 23636534 Score = 65.9 bits (33), Expect = 2e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 583 gacctgagcttggtaggtttgggcttgcgggtgctgg 619 ||||||||||||||||| ||||||||||||||||||| Sbjct: 23638054 gacctgagcttggtagggttgggcttgcgggtgctgg 23638090
>emb|X69378.1|MCYL16 M.crystallinum mRNA for ribosomal protein YL16 Length = 1015 Score = 103 bits (52), Expect = 7e-19 Identities = 106/124 (85%) Strand = Plus / Minus Query: 360 aagtacttgtcatcaaacttctccaccttaacaccagagatgtcaacctttgtggatgtg 419 |||||||||||||||||||||||||| || |||||||| ||||||||||| || || ||| Sbjct: 541 aagtacttgtcatcaaacttctccacattgacaccagaaatgtcaaccttggttgaggtg 482 Query: 420 gcaatgacataagcctggttcacccggcgaactgggacaccattgatcttgaaaggtcca 479 ||||| ||||| || |||||||| || | | ||||||||||||| ||| ||||| ||| Sbjct: 481 gcaataacataggcttggttcacacgcctcagagggacaccattgaccttaaaaggacca 422 Query: 480 gtga 483 |||| Sbjct: 421 gtga 418
>dbj|AB167080.1| Curculigo latifolia NAS-2 mRNA for neoculin acid subunit, complete cds Length = 655 Score = 75.8 bits (38), Expect = 2e-10 Identities = 90/106 (84%), Gaps = 1/106 (0%) Strand = Plus / Plus Query: 504 agctgcttgaggaacaccacgcgcttccccatgtacctcccagcgagcaggatcagcacc 563 |||||||| ||||| || || | |||||||||| ||||||| ||||| |||||||||||| Sbjct: 1 agctgcttcaggaaaacgaccctcttccccatgaacctcccggcgagaaggatcagcacc 60 Query: 564 gtgcccgggcgtgatggtcgacctgagcttggtaggtttgggcttg 609 || ||| || || ||| ||| |||||||||||| || ||||||||| Sbjct: 61 gt-ccccggagtaatgctcggcctgagcttggtgggcttgggcttg 105
>gb|DQ226579.1| Boechera divaricarpa isolate SLW-2-D10 mRNA sequence Length = 693 Score = 73.8 bits (37), Expect = 6e-10 Identities = 100/121 (82%) Strand = Plus / Plus Query: 358 caaagtacttgtcatcaaacttctccaccttaacaccagagatgtcaacctttgtggatg 417 |||| ||||||||||| || ||||| | || || ||||||||||||||||||||||| | Sbjct: 309 caaaatacttgtcatcgaatttctcaatgttgactccagagatgtcaacctttgtggaag 368 Query: 418 tggcaatgacataagcctggttcacccggcgaactgggacaccattgatcttgaaaggtc 477 | |||| ||||| |||||||| || || | | ||| ||||||||||||||||| |||| Sbjct: 369 ttccaatcacataggcctggttaacacgtctcaatggaacaccattgatcttgaatggtc 428 Query: 478 c 478 | Sbjct: 429 c 429
>ref|NM_106066.3| Arabidopsis thaliana structural constituent of ribosome AT1G74060 mRNA, complete cds Length = 967 Score = 67.9 bits (34), Expect = 4e-08 Identities = 79/94 (84%) Strand = Plus / Minus Query: 388 taacaccagagatgtcaacctttgtggatgtggcaatgacataagcctggttcacccggc 447 |||| ||||| ||||||||||||||||| || |||||||||| |||||||| || || | Sbjct: 522 taactccagaaatgtcaacctttgtggaagtaccaatgacataggcctggttaacacgtc 463 Query: 448 gaactgggacaccattgatcttgaaaggtccagt 481 | || ||||||||||||||||| |||||||| Sbjct: 462 tcagaggaacaccattgatcttgaatggtccagt 429
>gb|AY062622.1| Arabidopsis thaliana putative 60S ribosomal protein L6 (F2P9.7) mRNA, complete cds Length = 942 Score = 67.9 bits (34), Expect = 4e-08 Identities = 79/94 (84%) Strand = Plus / Minus Query: 388 taacaccagagatgtcaacctttgtggatgtggcaatgacataagcctggttcacccggc 447 |||| ||||| ||||||||||||||||| || |||||||||| |||||||| || || | Sbjct: 517 taactccagaaatgtcaacctttgtggaagtaccaatgacataggcctggttaacacgtc 458 Query: 448 gaactgggacaccattgatcttgaaaggtccagt 481 | || ||||||||||||||||| |||||||| Sbjct: 457 tcagaggaacaccattgatcttgaatggtccagt 424
>emb|BX814470.1|CNS0ADLC Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB75ZG07 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 942 Score = 67.9 bits (34), Expect = 4e-08 Identities = 79/94 (84%) Strand = Plus / Minus Query: 388 taacaccagagatgtcaacctttgtggatgtggcaatgacataagcctggttcacccggc 447 |||| ||||| ||||||||||||||||| || |||||||||| |||||||| || || | Sbjct: 514 taactccagaaatgtcaacctttgtggaagtaccaatgacataggcctggttaacacgtc 455 Query: 448 gaactgggacaccattgatcttgaaaggtccagt 481 | || ||||||||||||||||| |||||||| Sbjct: 454 tcagaggaacaccattgatcttgaatggtccagt 421
>gb|BT002588.1| Arabidopsis thaliana putative 60S ribosomal protein L6 (At1g74060) mRNA, complete cds Length = 789 Score = 67.9 bits (34), Expect = 4e-08 Identities = 79/94 (84%) Strand = Plus / Minus Query: 388 taacaccagagatgtcaacctttgtggatgtggcaatgacataagcctggttcacccggc 447 |||| ||||| ||||||||||||||||| || |||||||||| |||||||| || || | Sbjct: 454 taactccagaaatgtcaacctttgtggaagtaccaatgacataggcctggttaacacgtc 395 Query: 448 gaactgggacaccattgatcttgaaaggtccagt 481 | || ||||||||||||||||| |||||||| Sbjct: 394 tcagaggaacaccattgatcttgaatggtccagt 361
>ref|NM_106064.2| Arabidopsis thaliana structural constituent of ribosome AT1G74050 mRNA, complete cds Length = 1035 Score = 65.9 bits (33), Expect = 2e-07 Identities = 75/89 (84%) Strand = Plus / Minus Query: 393 ccagagatgtcaacctttgtggatgtggcaatgacataagcctggttcacccggcgaact 452 ||||| ||||||||||||||||| ||| |||| ||||| |||||||| || || | | Sbjct: 575 ccagaaatgtcaacctttgtggaagtgccaatcacataggcctggttaacacgtctcaaa 516 Query: 453 gggacaccattgatcttgaaaggtccagt 481 || ||||||||||||||||| |||||||| Sbjct: 515 ggaacaccattgatcttgaatggtccagt 487
>ref|XM_571207.1| Cryptococcus neoformans var. neoformans JEC21 structural constituent of ribosome (CNE03060) partial mRNA Length = 764 Score = 65.9 bits (33), Expect = 2e-07 Identities = 69/81 (85%) Strand = Plus / Minus Query: 390 acaccagagatgtcaacctttgtggatgtggcaatgacataagcctggttcacccggcga 449 ||||| |||||||| ||||| ||||| |||||||||||||| |||||| |||| || ||| Sbjct: 480 acaccggagatgtcgaccttggtggaagtggcaatgacataggcctggctcactcgacga 421 Query: 450 actgggacaccattgatcttg 470 | |||||||| |||| |||| Sbjct: 420 agagggacaccgttgagcttg 400
>gb|AY114641.1| Arabidopsis thaliana putative 60S ribosomal protein L6 (At1g74050) mRNA, complete cds Length = 891 Score = 65.9 bits (33), Expect = 2e-07 Identities = 75/89 (84%) Strand = Plus / Minus Query: 393 ccagagatgtcaacctttgtggatgtggcaatgacataagcctggttcacccggcgaact 452 ||||| ||||||||||||||||| ||| |||| ||||| |||||||| || || | | Sbjct: 449 ccagaaatgtcaacctttgtggaagtgccaatcacataggcctggttaacacgtctcaaa 390 Query: 453 gggacaccattgatcttgaaaggtccagt 481 || ||||||||||||||||| |||||||| Sbjct: 389 ggaacaccattgatcttgaatggtccagt 361
>gb|AY081305.1| Arabidopsis thaliana putative 60S ribosomal protein L6 (At1g74050) mRNA, complete cds Length = 960 Score = 65.9 bits (33), Expect = 2e-07 Identities = 75/89 (84%) Strand = Plus / Minus Query: 393 ccagagatgtcaacctttgtggatgtggcaatgacataagcctggttcacccggcgaact 452 ||||| ||||||||||||||||| ||| |||| ||||| |||||||| || || | | Sbjct: 501 ccagaaatgtcaacctttgtggaagtgccaatcacataggcctggttaacacgtctcaaa 442 Query: 453 gggacaccattgatcttgaaaggtccagt 481 || ||||||||||||||||| |||||||| Sbjct: 441 ggaacaccattgatcttgaatggtccagt 413
>gb|AY054573.1| Arabidopsis thaliana putative 60S ribosomal protein L6 (At1g74050; F2P9.8) mRNA, complete cds Length = 892 Score = 65.9 bits (33), Expect = 2e-07 Identities = 75/89 (84%) Strand = Plus / Minus Query: 393 ccagagatgtcaacctttgtggatgtggcaatgacataagcctggttcacccggcgaact 452 ||||| ||||||||||||||||| ||| |||| ||||| |||||||| || || | | Sbjct: 505 ccagaaatgtcaacctttgtggaagtgccaatcacataggcctggttaacacgtctcaaa 446 Query: 453 gggacaccattgatcttgaaaggtccagt 481 || ||||||||||||||||| |||||||| Sbjct: 445 ggaacaccattgatcttgaatggtccagt 417
>gb|AY087325.1| Arabidopsis thaliana clone 3418 mRNA, complete sequence Length = 985 Score = 65.9 bits (33), Expect = 2e-07 Identities = 75/89 (84%) Strand = Plus / Minus Query: 393 ccagagatgtcaacctttgtggatgtggcaatgacataagcctggttcacccggcgaact 452 ||||| ||||||||||||||||| ||| |||| ||||| |||||||| || || | | Sbjct: 575 ccagaaatgtcaacctttgtggaagtgccaatcacataggcctggttaacacgtctcaaa 516 Query: 453 gggacaccattgatcttgaaaggtccagt 481 || ||||||||||||||||| |||||||| Sbjct: 515 ggaacaccattgatcttgaatggtccagt 487
>gb|AE017345.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 5, complete sequence Length = 1507550 Score = 63.9 bits (32), Expect = 6e-07 Identities = 65/76 (85%) Strand = Plus / Minus Query: 390 acaccagagatgtcaacctttgtggatgtggcaatgacataagcctggttcacccggcga 449 ||||| |||||||| ||||| ||||| |||||||||||||| |||||| |||| || ||| Sbjct: 868852 acaccggagatgtcgaccttggtggaagtggcaatgacataggcctggctcactcgacga 868793 Query: 450 actgggacaccattga 465 | |||||||| |||| Sbjct: 868792 agagggacaccgttga 868777
>gb|AC016662.7|AC016662 Arabidopsis thaliana chromosome 1 BAC F2P9 genomic sequence, complete sequence Length = 108387 Score = 61.9 bits (31), Expect = 2e-06 Identities = 76/91 (83%) Strand = Plus / Minus Query: 388 taacaccagagatgtcaacctttgtggatgtggcaatgacataagcctggttcacccggc 447 |||| ||||| ||||||||||||||||| || |||||||||| |||||||| || || | Sbjct: 22757 taactccagaaatgtcaacctttgtggaagtaccaatgacataggcctggttaacacgtc 22698 Query: 448 gaactgggacaccattgatcttgaaaggtcc 478 | || ||||||||||||||||| ||||| Sbjct: 22697 tcagaggaacaccattgatcttgaatggtcc 22667 Score = 60.0 bits (30), Expect = 9e-06 Identities = 72/86 (83%) Strand = Plus / Minus Query: 393 ccagagatgtcaacctttgtggatgtggcaatgacataagcctggttcacccggcgaact 452 ||||| ||||||||||||||||| ||| |||| ||||| |||||||| || || | | Sbjct: 25490 ccagaaatgtcaacctttgtggaagtgccaatcacataggcctggttaacacgtctcaaa 25431 Query: 453 gggacaccattgatcttgaaaggtcc 478 || ||||||||||||||||| ||||| Sbjct: 25430 ggaacaccattgatcttgaatggtcc 25405
>emb|BX814105.1|CNS0ADRY Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB57ZF05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 440 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Minus Query: 388 taacaccagagatgtcaacctttgtggatgtggcaatgacataagcctggtt 439 |||| ||||| ||||||||||||||||| ||| |||| ||||| |||||||| Sbjct: 63 taactccagaaatgtcaacctttgtggaagtgccaatcacataggcctggtt 12
>gb|AC155898.15| Medicago truncatula clone mth2-109f1, complete sequence Length = 93173 Score = 48.1 bits (24), Expect = 0.035 Identities = 69/84 (82%) Strand = Plus / Minus Query: 359 aaagtacttgtcatcaaacttctccaccttaacaccagagatgtcaacctttgtggatgt 418 ||||||||||||||||| || ||||| |||||||| ||||| || || || || ||||| Sbjct: 486 aaagtacttgtcatcaaggttatccacattaacaccggagatatcgactttggttgatgt 427 Query: 419 ggcaatgacataagcctggttcac 442 |||| ||||| ||||| ||||| Sbjct: 426 accaatcacataggcctgattcac 403
>dbj|AB035569.1| Chara globularis cgrpl6 mRNA for 60S ribosomal protein L6 CgRPL6, partial cds Length = 609 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Minus Query: 498 gacttgagctgcttgaggaacaccacgcgctt 529 |||| ||||||||||||||| ||||||||||| Sbjct: 224 gactcgagctgcttgaggaataccacgcgctt 193
>gb|AY088336.1| Arabidopsis thaliana clone 573 mRNA, complete sequence Length = 832 Score = 44.1 bits (22), Expect = 0.55 Identities = 70/86 (81%) Strand = Plus / Minus Query: 393 ccagagatgtcaacctttgtggatgtggcaatgacataagcctggttcacccggcgaact 452 ||||| ||||||||||||||||| || |||| ||||| || ||||| || || | | | Sbjct: 477 ccagaaatgtcaacctttgtggaggttccaatcacataggcttggttaacacgtctcaat 418 Query: 453 gggacaccattgatcttgaaaggtcc 478 || |||||||| |||||||| ||||| Sbjct: 417 ggaacaccattaatcttgaatggtcc 392
>gb|AY674237.1| Ixodes pacificus clone IP_7_60_92_78_CLU ribosomal protein L6 mRNA, complete cds Length = 807 Score = 42.1 bits (21), Expect = 2.2 Identities = 36/41 (87%) Strand = Plus / Minus Query: 489 agcaggccagacttgagctgcttgaggaacaccacgcgctt 529 |||||||| | ||| |||||||| ||||||||||| ||||| Sbjct: 446 agcaggcccgtcttcagctgcttcaggaacaccacacgctt 406
>ref|XM_363819.1| Magnaporthe grisea 70-15 hypothetical protein (MG01745.4) partial mRNA Length = 1389 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 353 cctagcaaagtacttgtcatc 373 ||||||||||||||||||||| Sbjct: 798 cctagcaaagtacttgtcatc 778
>gb|AC166939.2| Mus musculus BAC clone RP23-72K19 from chromosome 8, complete sequence Length = 236510 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 3 gcaaagaaaacctgcaaaagc 23 ||||||||||||||||||||| Sbjct: 146583 gcaaagaaaacctgcaaaagc 146563
>gb|AC122890.4| Mus musculus BAC clone RP23-63O14 from 8, complete sequence Length = 209359 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 3 gcaaagaaaacctgcaaaagc 23 ||||||||||||||||||||| Sbjct: 8976 gcaaagaaaacctgcaaaagc 8956
>gb|AC144728.11| Medicago truncatula clone mth2-6g7, complete sequence Length = 105161 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 acgcaaagaaaacctgcaaaa 21 ||||||||||||||||||||| Sbjct: 53011 acgcaaagaaaacctgcaaaa 52991
>gb|AC136840.24| Medicago truncatula clone mth2-33n3, complete sequence Length = 106528 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 acgcaaagaaaacctgcaaaa 21 ||||||||||||||||||||| Sbjct: 99379 acgcaaagaaaacctgcaaaa 99359
>emb|BX649433.4| Zebrafish DNA sequence from clone DKEY-215P16 in linkage group 7, complete sequence Length = 77241 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 192 ccaagatagttcttaaggtca 212 ||||||||||||||||||||| Sbjct: 51238 ccaagatagttcttaaggtca 51258
>emb|BX284672.11| Zebrafish DNA sequence from clone DKEY-88N24 in linkage group 20 Contains give genes for novel proteins with Lectin C-type domains, the gene for a novel protein similar to vertebrate NDRG (N-myc downregulated gene family) member 2 (NDGR2), two novel genes and two CpG islands, complete sequence Length = 149982 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 4 caaagaaaacctgcaaaagca 24 ||||||||||||||||||||| Sbjct: 78832 caaagaaaacctgcaaaagca 78852
>emb|AL928677.6| Zebrafish DNA sequence from clone BUSM1-70B1 in linkage group 7 Contains a novel gene similar to mouse and rodent CHRNA7 (cholinergic receptor, nicotinic, alpha polypeptide 7), a novel gene and two CpG islands, complete sequence Length = 144076 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 192 ccaagatagttcttaaggtca 212 ||||||||||||||||||||| Sbjct: 62863 ccaagatagttcttaaggtca 62843
>emb|AL590447.1|CNS07EGE chromosome VII of strain GB-M1 of Encephalitozoon cuniculi (Microspora) Length = 226576 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 328 tcttctttgccctggccttct 348 ||||||||||||||||||||| Sbjct: 139403 tcttctttgccctggccttct 139383
>dbj|AB109375.1| Tribolodon hakonensis GDH mRNA for glutamate dehydrogenase, complete cds Length = 3540 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 504 agctgcttgaggaacaccacgcgcttccc 532 |||||||||||||| ||||| |||||||| Sbjct: 3081 agctgcttgaggaagaccacacgcttccc 3109
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 547 cgagcaggatcagcaccgtgcccgg 571 |||||||||||||| |||||||||| Sbjct: 3202038 cgagcaggatcagcgccgtgcccgg 3202062
>emb|AL929433.10| Mouse DNA sequence from clone RP23-193M23 on chromosome 4, complete sequence Length = 198426 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 479 agtgatgaggagcaggccaga 499 ||||||||||||||||||||| Sbjct: 165237 agtgatgaggagcaggccaga 165257
>gb|BC076927.1| Xenopus tropicalis matrix metalloproteinase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase), mRNA (cDNA clone MGC:89173 IMAGE:7016488), complete cds Length = 2746 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 catcaaacttctccacctta 389 |||||||||||||||||||| Sbjct: 1513 catcaaacttctccacctta 1494
>gb|DQ214771.1| Taeniopygia guttata clone 0061P0023H09 ribosomal protein L6 internal polyA variant-like mRNA, complete sequence Length = 950 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 405 acctttgtggatgtggcaat 424 |||||||||||||||||||| Sbjct: 636 acctttgtggatgtggcaat 617
>gb|DQ214770.1| Taeniopygia guttata clone 0061P0025H04 ribosomal protein L6 internal polyA variant-like mRNA, complete sequence Length = 959 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 405 acctttgtggatgtggcaat 424 |||||||||||||||||||| Sbjct: 646 acctttgtggatgtggcaat 627
>gb|AC145554.2| Mus musculus BAC clone RP23-217E22 from chromosome 18, complete sequence Length = 214489 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 479 agtgatgaggagcaggccag 498 |||||||||||||||||||| Sbjct: 40024 agtgatgaggagcaggccag 40005
>ref|XM_591972.2| PREDICTED: Bos taurus similar to Sodium/hydrogen exchanger 2 (Na(+)/H(+) exchanger 2) (NHE-2) (Solute carrier family 9 member 2) (H7) (LOC514166), partial mRNA Length = 959 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 gtacttgtcatcaaacttct 381 |||||||||||||||||||| Sbjct: 25 gtacttgtcatcaaacttct 6
>ref|XM_716459.1| Candida albicans SC5314 putative 26S proteasome regulatory particle subunit Rpn3p (CaO19_3054), mRNA Length = 1446 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 gtcatcctttttgaagtcag 279 |||||||||||||||||||| Sbjct: 1020 gtcatcctttttgaagtcag 1001
>ref|XM_716188.1| Candida albicans SC5314 putative 26S proteasome regulatory particle subunit Rpn3p (CaO19_10572), mRNA Length = 1446 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 gtcatcctttttgaagtcag 279 |||||||||||||||||||| Sbjct: 1020 gtcatcctttttgaagtcag 1001
>ref|XM_752221.1| Ustilago maydis 521 hypothetical protein (UM01167.1) partial mRNA Length = 3945 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 agaaggtcatctcatggggc 161 |||||||||||||||||||| Sbjct: 2466 agaaggtcatctcatggggc 2485
>ref|XM_533873.2| PREDICTED: Canis familiaris similar to peptidylprolyl isomerase A isoform 1 (LOC609903), mRNA Length = 738 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 360 aagtacttgtcatcaaacttctcc 383 |||| ||||||||||||||||||| Sbjct: 286 aagttcttgtcatcaaacttctcc 263
>gb|AC117260.3| Mus musculus BAC clone RP24-498G10 from chromosome 18, complete sequence Length = 211919 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 479 agtgatgaggagcaggccag 498 |||||||||||||||||||| Sbjct: 71898 agtgatgaggagcaggccag 71917
>gb|AC121871.3| Mus musculus BAC clone RP24-121J1 from chromosome 10, complete sequence Length = 214405 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 atggccttctggtcatcctt 268 |||||||||||||||||||| Sbjct: 125642 atggccttctggtcatcctt 125623
>emb|CR689911.2|CNS0FVAB Tetraodon nigroviridis full-length cDNA Length = 1324 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 aaagaaaacctgcaaaagca 24 |||||||||||||||||||| Sbjct: 147 aaagaaaacctgcaaaagca 128
>gb|AC146748.16| Medicago truncatula clone mth2-65k8, complete sequence Length = 113744 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 360 aagtacttgtcatcaaactt 379 |||||||||||||||||||| Sbjct: 68034 aagtacttgtcatcaaactt 68015
>gb|AF517879.1| Griffithsia japonica isolate Gj550 ribosome protein L6 mRNA, complete cds Length = 764 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 504 agctgcttgaggaacaccacgcgc 527 ||||||||||||| |||||||||| Sbjct: 329 agctgcttgaggaccaccacgcgc 306
>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome Length = 5064019 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 cttgatcaactcagcatcaa 249 |||||||||||||||||||| Sbjct: 3482500 cttgatcaactcagcatcaa 3482519
>gb|AY831461.1| Pseudomonas putida plasmid pKW1 putative porin gene, partial cds; ORF2 gene, complete cds; meta operon, complete sequence; and ORF3, and ORF4 genes, complete cds Length = 9632 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 418 tggcaatgacataagcctggttca 441 |||||||| ||||||||||||||| Sbjct: 5022 tggcaatggcataagcctggttca 5045
>ref|NM_001006842.1| Xenopus tropicalis matrix metalloproteinase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase) (mmp9), mRNA Length = 2746 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 catcaaacttctccacctta 389 |||||||||||||||||||| Sbjct: 1513 catcaaacttctccacctta 1494
>gb|DQ351275.1| Streptomyces sp. NRRL 30748 meridamycin biosynthetic gene cluster and flanking regions Length = 116831 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 477 ccagtgatgaggagcaggcc 496 |||||||||||||||||||| Sbjct: 39372 ccagtgatgaggagcaggcc 39353
>emb|AL592215.12| Mouse DNA sequence from clone RP23-172P19 on chromosome 11 Contains two novel genes (4930452L02Rik and B430319H21Rik), the 3' end of the gene for a novel protein (1700019I23Rik), the gene for a novel protein (4933407G07Rik), the Pmp22 gene for peripheral myelin protein and a CpG island, complete sequence Length = 219468 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 479 agtgatgaggagcaggccag 498 |||||||||||||||||||| Sbjct: 90411 agtgatgaggagcaggccag 90430
>gb|DQ384529.1| Panax ginseng clone PG6L-6 unknown mRNA Length = 624 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 357 gcaaagtacttgtcatcaaacttctcca 384 |||||||||||||| ||| ||||||||| Sbjct: 560 gcaaagtacttgtcgtcatacttctcca 533
>dbj|AB226127.1| Aspergillus oryzae cDNA, contig sequence: AoEST2984 Length = 929 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 148 tcatctcatggggcttgtcaccgt 171 ||||||| |||||||||||||||| Sbjct: 658 tcatctcgtggggcttgtcaccgt 635
>dbj|AP007169.1| Aspergillus oryzae RIB40 genomic DNA, SC038 Length = 1725576 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 148 tcatctcatggggcttgtcaccgt 171 ||||||| |||||||||||||||| Sbjct: 769646 tcatctcgtggggcttgtcaccgt 769669
>gb|AC004671.1| Homo sapiens 12p13.3 PAC RPCI3-340I3 (Roswell Park Cancer Institute Human PAC Library) complete sequence Length = 141266 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 aaagtacttgtcatcaaact 378 |||||||||||||||||||| Sbjct: 99726 aaagtacttgtcatcaaact 99707
>gb|AC159625.2| Mus musculus BAC clone RP24-262L7 from chromosome 12, complete sequence Length = 189979 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 ggtcatctcatggggcttgt 165 |||||||||||||||||||| Sbjct: 31984 ggtcatctcatggggcttgt 31965
>gb|AC078927.20| Homo sapiens 12 BAC RP11-745O10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 125777 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 tcatctcatggggcttgtca 167 |||||||||||||||||||| Sbjct: 108030 tcatctcatggggcttgtca 108049
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 tcttctttgccctggccttc 347 |||||||||||||||||||| Sbjct: 381469 tcttctttgccctggccttc 381488
>emb|CT025641.10| Mouse DNA sequence from clone RP24-322A17 on chromosome 17, complete sequence Length = 122522 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 502 tgagctgcttgaggaacaccacgc 525 |||||||| ||||||||||||||| Sbjct: 100732 tgagctgcctgaggaacaccacgc 100709
>gb|U93491.1|MUU93491 Meriones unguiculatus NHE-2 mRNA, partial cds Length = 317 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 gtacttgtcatcaaacttct 381 |||||||||||||||||||| Sbjct: 83 gtacttgtcatcaaacttct 64 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,422,386 Number of Sequences: 3902068 Number of extensions: 5422386 Number of successful extensions: 113085 Number of sequences better than 10.0: 71 Number of HSP's better than 10.0 without gapping: 70 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 112731 Number of HSP's gapped (non-prelim): 333 length of query: 632 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 609 effective length of database: 17,143,297,704 effective search space: 10440268301736 effective search space used: 10440268301736 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)